ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd25a24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_502937.1| Yarrowia lipolytica CLIB122, YALI0D17380g predi... 42 0.29
2gb|AC087256.9| Homo sapiens 12q BAC RP11-443N24 (Roswell Park Ca... 42 0.29
3gb|AC021868.17|AC021868 Homo sapiens 12 BAC RP11-679N16 (Roswell... 42 0.29
4gb|AC019209.3|AC019209 Homo sapiens BAC clone RP11-443N24 from S... 42 0.29
5emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 42 0.29
6gb|AE006286.1| Lactococcus lactis subsp. lactis IL1403 section 4... 40 1.1
7ref|XM_854771.1| PREDICTED: Canis familiaris similar to LYST-int... 40 1.1
8ref|XM_546602.2| PREDICTED: Canis familiaris similar to LYST-int... 40 1.1
9gb|AF323673.1|AF323673 Bacteriophage bIL312, complete genome 40 1.1
10gb|AC154392.18| Mus musculus chromosome 1, clone RP23-413K6, com... 38 4.5
11gb|BT015260.1| Drosophila melanogaster LD45662 full insert cDNA 38 4.5
12emb|CR555306.1| Azoarcus sp. EbN1 complete genome 38 4.5
13emb|BX571861.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 38 4.5
14gb|AC104610.13| Drosophila melanogaster 3L BAC RP98-35J16 (Roswe... 38 4.5
15gb|AY113584.1| Drosophila melanogaster RH35718 full insert cDNA 38 4.5
16ref|NM_132159.1| Drosophila melanogaster CG1677-RA (CG1677), mRNA 38 4.5
17gb|AC080089.5| Homo sapiens BAC clone RP11-785J10 from 4, comple... 38 4.5
18gb|AE003440.3| Drosophila melanogaster chromosome X, section 24 ... 38 4.5

>ref|XM_502937.1| Yarrowia lipolytica CLIB122, YALI0D17380g predicted mRNA
          Length = 480

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 60  gaaaagctcaatgacctgctg 80
           |||||||||||||||||||||
Sbjct: 448 gaaaagctcaatgacctgctg 468



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>gb|AC087256.9| Homo sapiens 12q BAC RP11-443N24 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 149546

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 68     caatgacctgctgaagggtcttaaa 92
              ||||||||||||||||| |||||||
Sbjct: 106652 caatgacctgctgaaggatcttaaa 106628



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>gb|AC021868.17|AC021868 Homo sapiens 12 BAC RP11-679N16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 168227

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 68    caatgacctgctgaagggtcttaaa 92
             ||||||||||||||||| |||||||
Sbjct: 28386 caatgacctgctgaaggatcttaaa 28410



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>gb|AC019209.3|AC019209 Homo sapiens BAC clone RP11-443N24 from Sequence-12, complete sequence
          Length = 196817

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 68     caatgacctgctgaagggtcttaaa 92
              ||||||||||||||||| |||||||
Sbjct: 153923 caatgacctgctgaaggatcttaaa 153899



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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 60      gaaaagctcaatgacctgctg 80
               |||||||||||||||||||||
Sbjct: 2142359 gaaaagctcaatgacctgctg 2142339



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>gb|AE006286.1| Lactococcus lactis subsp. lactis IL1403 section 48 of 218 of the
            complete genome
          Length = 10029

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 52   tgccccctgaaaagctcaat 71
            ||||||||||||||||||||
Sbjct: 6640 tgccccctgaaaagctcaat 6621



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>ref|XM_854771.1| PREDICTED: Canis familiaris similar to LYST-interacting protein LIP8,
            transcript variant 2 (LOC489484), mRNA
          Length = 1977

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 40   cccctgttgatctgccccct 59
            ||||||||||||||||||||
Sbjct: 1475 cccctgttgatctgccccct 1494



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>ref|XM_546602.2| PREDICTED: Canis familiaris similar to LYST-interacting protein LIP8,
            transcript variant 1 (LOC489484), mRNA
          Length = 2957

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 40   cccctgttgatctgccccct 59
            ||||||||||||||||||||
Sbjct: 2186 cccctgttgatctgccccct 2205



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>gb|AF323673.1|AF323673 Bacteriophage bIL312, complete genome
          Length = 15179

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 52   tgccccctgaaaagctcaat 71
            ||||||||||||||||||||
Sbjct: 7948 tgccccctgaaaagctcaat 7929



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>gb|AC154392.18| Mus musculus chromosome 1, clone RP23-413K6, complete sequence
          Length = 205076

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 47     tgatctgccccctgaaaag 65
              |||||||||||||||||||
Sbjct: 136814 tgatctgccccctgaaaag 136832



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>gb|BT015260.1| Drosophila melanogaster LD45662 full insert cDNA
          Length = 4060

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 8    tggcgcaggcaatgacagc 26
            |||||||||||||||||||
Sbjct: 1758 tggcgcaggcaatgacagc 1776



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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 28      acgcggacgatgcccctgt 46
               |||||||||||||||||||
Sbjct: 2090376 acgcggacgatgcccctgt 2090358



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>emb|BX571861.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
             3/17
          Length = 342905

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 6     tttggcgcaggcaatgaca 24
             |||||||||||||||||||
Sbjct: 57095 tttggcgcaggcaatgaca 57077



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>gb|AC104610.13| Drosophila melanogaster 3L BAC RP98-35J16 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 138534

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 8     tggcgcaggcaatgacagc 26
             |||||||||||||||||||
Sbjct: 80759 tggcgcaggcaatgacagc 80741



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>gb|AY113584.1| Drosophila melanogaster RH35718 full insert cDNA
          Length = 3692

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 8    tggcgcaggcaatgacagc 26
            |||||||||||||||||||
Sbjct: 1396 tggcgcaggcaatgacagc 1414



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>ref|NM_132159.1| Drosophila melanogaster CG1677-RA (CG1677), mRNA
          Length = 3678

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 8    tggcgcaggcaatgacagc 26
            |||||||||||||||||||
Sbjct: 1395 tggcgcaggcaatgacagc 1413



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>gb|AC080089.5| Homo sapiens BAC clone RP11-785J10 from 4, complete sequence
          Length = 174023

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 79    tgaagggtcttaaatttgatgtt 101
             ||||||||||||| |||||||||
Sbjct: 54477 tgaagggtcttaactttgatgtt 54499



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>gb|AE003440.3| Drosophila melanogaster chromosome X, section 24 of 74 of the complete
              sequence
          Length = 342195

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 8      tggcgcaggcaatgacagc 26
              |||||||||||||||||||
Sbjct: 112146 tggcgcaggcaatgacagc 112128


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 698,045
Number of Sequences: 3902068
Number of extensions: 698045
Number of successful extensions: 42869
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42823
Number of HSP's gapped (non-prelim): 46
length of query: 101
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 80
effective length of database: 17,151,101,840
effective search space: 1372088147200
effective search space used: 1372088147200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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