ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd24l15 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009268.1| Triticum aestivum clone wlk8.pk0002.f4:fis, full insert mRNA sequence Length = 1919 Score = 846 bits (427), Expect = 0.0 Identities = 547/585 (93%), Gaps = 2/585 (0%) Strand = Plus / Plus Query: 1 agtactccaccgtgcagnattggtatgctggtgatgagnaagggcaaagggggcatttac 60 ||||||||||||||||| ||||||||||||| |||||| | ||||||||||||||||||| Sbjct: 1020 agtactccaccgtgcagaattggtatgctggcgatgagga-gggcaaagggggcatttac 1078 Query: 61 aattttgtcactaagagggggcgctgcaaggggcgtggctcgaaaatctcatggacacag 120 |||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 1079 aattttgtggccaagagggggcggtgcaaggggcgtggctcgaaaatctcatggacacag 1138 Query: 121 gttgagacagggtcagcaatcacctggnaagtacccaagtgtggagctggttggggacga 180 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 1139 gttgagacagggtcagcaatcacctgg-aagtacccaagtgtggagcttgttggggacga 1197 Query: 181 caccgttggagagttctactcggtagcgctgactaaggattaccagcaggccgatacagg 240 ||| ||||||||||||||||| ||||| ||| | |||||||||||||||||||||||||| Sbjct: 1198 cactgttggagagttctactccgtagcactgcccaaggattaccagcaggccgatacagg 1257 Query: 241 gacaaagatgatccacaaggggaagaattcacgcagccggattatatccaagggtatctc 300 ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1258 gacaaagatgatccataaggggaagaattcacgcagccggattatatccaaaggtatctc 1317 Query: 301 agcggggaagtcaaggaattgctaccgtgggctggtccagatgaattcaggtgcagagaa 360 || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1318 ggcaggaaagtcaaggaattgctaccgtgggctggtccagatgaattcaggtgcagagaa 1377 Query: 361 tgcgtataactcttctcagtgtgattcattgctgattggggacaaggctgctgctaacac 420 ||| ||||| ||||| ||||||||||||||||||||||||||||| ||||| || ||||| Sbjct: 1378 tgcttataattcttcgcagtgtgattcattgctgattggggacaacgctgccgccaacac 1437 Query: 421 ctatcccaccattcaggtgggttgtactagtggccgtgttgagcatgaagcaagcacatc 480 |||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 1438 ctatccgaccattcaggtgggttgcactagtggccgtgttgagcatgaggcaagcacatc 1497 Query: 481 caaaattggagaggaccagctgttttactttcagcaaagggggatagatcatgaaaaggc 540 ||||||||| ||||| ||||| || |||||||||||||| ||||| |||||||||||||| Sbjct: 1498 caaaattggcgaggatcagctattctactttcagcaaagagggattgatcatgaaaaggc 1557 Query: 541 cgttgcagccatgatcggtggattctgtagggccgtctttgaaca 585 ||||||||||||||| ||||| |||||||| |||||||||||||| Sbjct: 1558 cgttgcagccatgataggtgggttctgtagagccgtctttgaaca 1602
>ref|NM_190436.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1635 Score = 529 bits (267), Expect = e-147 Identities = 498/573 (86%), Gaps = 2/573 (0%) Strand = Plus / Plus Query: 1 agtactccaccgtgcagnattggtatgctggtgatgagnaagggcaaagggggcatttac 60 ||||||| || |||||| ||||||| ||||||||||| | ||| || |||||||||||| Sbjct: 983 agtactctacggtgcagaattggtactctggtgatgaggagggg-aaggggggcatttac 1041 Query: 61 aattttgtcactaagagggggcgctgcaaggggcgtggctcgaaaatctcatggacacag 120 || ||||| |||||||| || || ||||| ||||| ||||| || ||||||||||||||| Sbjct: 1042 aactttgttactaagagaggacggtgcaaagggcggggctctaagatctcatggacacag 1101 Query: 121 gttgagacagggtcagcaatcacctggnaagtacccaagtgtggagctggttggggacga 180 ||||||||||| |||||||| || ||| |||||||||||||||||||| ||||||| || Sbjct: 1102 gttgagacaggttcagcaattacatgg-aagtacccaagtgtggagcttcttggggatga 1160 Query: 181 caccgttggagagttctactcggtagcgctgactaaggattaccagcaggccgatacagg 240 || ||||||||||||||||| || || ||||| ||||||||||||||||| || ||||| Sbjct: 1161 tactgttggagagttctactcagttgcactgacgaaggattaccagcaggcagacacagg 1220 Query: 241 gacaaagatgatccacaaggggaagaattcacgcagccggattatatccaagggtatctc 300 |||||| |||||||||||||| |||||||| || || |||||||||||||| |||||||| Sbjct: 1221 gacaaaaatgatccacaagggaaagaattcgcggagtcggattatatccaaaggtatctc 1280 Query: 301 agcggggaagtcaaggaattgctaccgtgggctggtccagatgaattcaggtgcagagaa 360 ||| ||||||||| ||||||||||||||||| |||||||||| || ||||| ||||| || Sbjct: 1281 agctgggaagtcacggaattgctaccgtgggttggtccagataaactcaggcgcagaaaa 1340 Query: 361 tgcgtataactcttctcagtgtgattcattgctgattggggacaaggctgctgctaacac 420 ||| ||||| ||||| ||||||||||| |||||||||||||| || |||||||| ||||| Sbjct: 1341 tgcttataattcttcacagtgtgattctttgctgattggggataacgctgctgccaacac 1400 Query: 421 ctatcccaccattcaggtgggttgtactagtggccgtgttgagcatgaagcaagcacatc 480 |||||| || |||||||||||||| | | | | |||||||||||||| |||||||| || Sbjct: 1401 ctatccgactattcaggtgggttgcatttctagtcgtgttgagcatgaggcaagcacttc 1460 Query: 481 caaaattggagaggaccagctgttttactttcagcaaagggggatagatcatgaaaaggc 540 ||||| || ||||||||||| ||||| || || |||||||||||||| ||||||||||| Sbjct: 1461 aaaaataggggaggaccagctattttatttccaacaaagggggatagaccatgaaaaggc 1520 Query: 541 cgttgcagccatgatcggtggattctgtagggc 573 |||||||| ||||| ||||||||||| ||||| Sbjct: 1521 tgttgcagcgatgattggtggattctgcagggc 1553
>dbj|AK121100.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069G03, full insert sequence Length = 1978 Score = 529 bits (267), Expect = e-147 Identities = 498/573 (86%), Gaps = 2/573 (0%) Strand = Plus / Plus Query: 1 agtactccaccgtgcagnattggtatgctggtgatgagnaagggcaaagggggcatttac 60 ||||||| || |||||| ||||||| ||||||||||| | ||| || |||||||||||| Sbjct: 1029 agtactctacggtgcagaattggtactctggtgatgaggagggg-aaggggggcatttac 1087 Query: 61 aattttgtcactaagagggggcgctgcaaggggcgtggctcgaaaatctcatggacacag 120 || ||||| |||||||| || || ||||| ||||| ||||| || ||||||||||||||| Sbjct: 1088 aactttgttactaagagaggacggtgcaaagggcggggctctaagatctcatggacacag 1147 Query: 121 gttgagacagggtcagcaatcacctggnaagtacccaagtgtggagctggttggggacga 180 ||||||||||| |||||||| || ||| |||||||||||||||||||| ||||||| || Sbjct: 1148 gttgagacaggttcagcaattacatgg-aagtacccaagtgtggagcttcttggggatga 1206 Query: 181 caccgttggagagttctactcggtagcgctgactaaggattaccagcaggccgatacagg 240 || ||||||||||||||||| || || ||||| ||||||||||||||||| || ||||| Sbjct: 1207 tactgttggagagttctactcagttgcactgacgaaggattaccagcaggcagacacagg 1266 Query: 241 gacaaagatgatccacaaggggaagaattcacgcagccggattatatccaagggtatctc 300 |||||| |||||||||||||| |||||||| || || |||||||||||||| |||||||| Sbjct: 1267 gacaaaaatgatccacaagggaaagaattcgcggagtcggattatatccaaaggtatctc 1326 Query: 301 agcggggaagtcaaggaattgctaccgtgggctggtccagatgaattcaggtgcagagaa 360 ||| ||||||||| ||||||||||||||||| |||||||||| || ||||| ||||| || Sbjct: 1327 agctgggaagtcacggaattgctaccgtgggttggtccagataaactcaggcgcagaaaa 1386 Query: 361 tgcgtataactcttctcagtgtgattcattgctgattggggacaaggctgctgctaacac 420 ||| ||||| ||||| ||||||||||| |||||||||||||| || |||||||| ||||| Sbjct: 1387 tgcttataattcttcacagtgtgattctttgctgattggggataacgctgctgccaacac 1446 Query: 421 ctatcccaccattcaggtgggttgtactagtggccgtgttgagcatgaagcaagcacatc 480 |||||| || |||||||||||||| | | | | |||||||||||||| |||||||| || Sbjct: 1447 ctatccgactattcaggtgggttgcatttctagtcgtgttgagcatgaggcaagcacttc 1506 Query: 481 caaaattggagaggaccagctgttttactttcagcaaagggggatagatcatgaaaaggc 540 ||||| || ||||||||||| ||||| || || |||||||||||||| ||||||||||| Sbjct: 1507 aaaaataggggaggaccagctattttatttccaacaaagggggatagaccatgaaaaggc 1566 Query: 541 cgttgcagccatgatcggtggattctgtagggc 573 |||||||| ||||| ||||||||||| ||||| Sbjct: 1567 tgttgcagcgatgattggtggattctgcagggc 1599
>gb|AY103958.1| Zea mays PCO141591 mRNA sequence Length = 1691 Score = 502 bits (253), Expect = e-139 Identities = 490/567 (86%), Gaps = 2/567 (0%) Strand = Plus / Plus Query: 1 agtactccaccgtgcagnattggtatgctggtgatgagnaagggcaaagggggcatttac 60 |||||||||| |||||| ||||||| | ||||||||| | ||| | ||| |||||||| Sbjct: 737 agtactccacggtgcagaattggtactccggtgatgaggagggg-agaggaggcatttat 795 Query: 61 aattttgtcactaagagggggcgctgcaaggggcgtggctcgaaaatctcatggacacag 120 || ||||| || |||||||| | ||||| ||||| || ||||| ||||||||||||||| Sbjct: 796 aactttgtgacaaagaggggaaggtgcaaagggcggggttcgaagatctcatggacacag 855 Query: 121 gttgagacagggtcagcaatcacctggnaagtacccaagtgtggagctggttggggacga 180 ||||||||||| || || || || ||| ||||||||||| || ||||| || ||||| || Sbjct: 856 gttgagacaggatctgctattacatgg-aagtacccaagcgttgagctcgtcggggatga 914 Query: 181 caccgttggagagttctactcggtagcgctgactaaggattaccagcaggccgatacagg 240 || |||||||||||||||||||| ||||| || ||||||| |||||| || || ||||| Sbjct: 915 cagtgttggagagttctactcggttgcgcttacaaaggattgccagcaagcagacacagg 974 Query: 241 gacaaagatgatccacaaggggaagaattcacgcagccggattatatccaagggtatctc 300 ||| || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 975 gacgaaaatgatccacaaggggaaaaattcacgcagccggattatatccaagggcatctc 1034 Query: 301 agcggggaagtcaaggaattgctaccgtgggctggtccagatgaattcaggtgcagagaa 360 || |||||||||||||||||||||||||| |||||| |||||| || |||||||||| Sbjct: 1035 tgcagggaagtcaaggaattgctaccgtggcttggtcctgatgaactctagtgcagagaa 1094 Query: 361 tgcgtataactcttctcagtgtgattcattgctgattggggacaaggctgctgctaacac 420 ||| ||||| ||||| |||||||| |||||| |||| ||||| || || ||||| ||||| Sbjct: 1095 tgcttataattcttcacagtgtgactcattgttgatcggggataatgcggctgcgaacac 1154 Query: 421 ctatcccaccattcaggtgggttgtactagtggccgtgttgagcatgaagcaagcacatc 480 ||||||||||||||||||||| || ||||||||||| ||||||||||| |||||||| || Sbjct: 1155 ctatcccaccattcaggtggggtgcactagtggccgggttgagcatgaggcaagcacttc 1214 Query: 481 caaaattggagaggaccagctgttttactttcagcaaagggggatagatcatgaaaaggc 540 ||||||||||||||| ||||| ||||| || |||||||| ||| |||||||||||||||| Sbjct: 1215 caaaattggagaggatcagctattttatttccagcaaagaggggtagatcatgaaaaggc 1274 Query: 541 cgttgcagccatgatcggtggattctg 567 ||||| |||||||| ||||||||||| Sbjct: 1275 agttgccgccatgattggtggattctg 1301
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 420 bits (212), Expect = e-114 Identities = 383/438 (87%), Gaps = 2/438 (0%) Strand = Plus / Minus Query: 1 agtactccaccgtgcagnattggtatgctggtgatgagnaagggcaaagggggcatttac 60 ||||||| || |||||| ||||||| ||||||||||| | ||| || |||||||||||| Sbjct: 35500752 agtactctacggtgcagaattggtactctggtgatgaggagggg-aaggggggcatttac 35500694 Query: 61 aattttgtcactaagagggggcgctgcaaggggcgtggctcgaaaatctcatggacacag 120 || ||||| |||||||| || || ||||| ||||| ||||| || ||||||||||||||| Sbjct: 35500693 aactttgttactaagagaggacggtgcaaagggcggggctctaagatctcatggacacag 35500634 Query: 121 gttgagacagggtcagcaatcacctggnaagtacccaagtgtggagctggttggggacga 180 ||||||||||| |||||||| || ||| |||||||||||||||||||| ||||||| || Sbjct: 35500633 gttgagacaggttcagcaattacatgg-aagtacccaagtgtggagcttcttggggatga 35500575 Query: 181 caccgttggagagttctactcggtagcgctgactaaggattaccagcaggccgatacagg 240 || ||||||||||||||||| || || ||||| ||||||||||||||||| || ||||| Sbjct: 35500574 tactgttggagagttctactcagttgcactgacgaaggattaccagcaggcagacacagg 35500515 Query: 241 gacaaagatgatccacaaggggaagaattcacgcagccggattatatccaagggtatctc 300 |||||| |||||||||||||| |||||||| || || |||||||||||||| |||||||| Sbjct: 35500514 gacaaaaatgatccacaagggaaagaattcgcggagtcggattatatccaaaggtatctc 35500455 Query: 301 agcggggaagtcaaggaattgctaccgtgggctggtccagatgaattcaggtgcagagaa 360 ||| ||||||||| ||||||||||||||||| |||||||||| || ||||| ||||| || Sbjct: 35500454 agctgggaagtcacggaattgctaccgtgggttggtccagataaactcaggcgcagaaaa 35500395 Query: 361 tgcgtataactcttctcagtgtgattcattgctgattggggacaaggctgctgctaacac 420 ||| ||||| ||||| ||||||||||| |||||||||||||| || |||||||| ||||| Sbjct: 35500394 tgcttataattcttcacagtgtgattctttgctgattggggataacgctgctgccaacac 35500335 Query: 421 ctatcccaccattcaggt 438 |||||| || |||||||| Sbjct: 35500334 ctatccgactattcaggt 35500317 Score = 125 bits (63), Expect = 2e-25 Identities = 105/119 (88%) Strand = Plus / Minus Query: 455 cgtgttgagcatgaagcaagcacatccaaaattggagaggaccagctgttttactttcag 514 |||||||||||||| |||||||| || ||||| || ||||||||||| ||||| || || Sbjct: 35499269 cgtgttgagcatgaggcaagcacttcaaaaataggggaggaccagctattttatttccaa 35499210 Query: 515 caaagggggatagatcatgaaaaggccgttgcagccatgatcggtggattctgtagggc 573 |||||||||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||| Sbjct: 35499209 caaagggggatagaccatgaaaaggctgttgcagcgatgattggtggattctgcagggc 35499151
>dbj|AP003252.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0446G04 Length = 143515 Score = 420 bits (212), Expect = e-114 Identities = 383/438 (87%), Gaps = 2/438 (0%) Strand = Plus / Minus Query: 1 agtactccaccgtgcagnattggtatgctggtgatgagnaagggcaaagggggcatttac 60 ||||||| || |||||| ||||||| ||||||||||| | ||| || |||||||||||| Sbjct: 30939 agtactctacggtgcagaattggtactctggtgatgaggagggg-aaggggggcatttac 30881 Query: 61 aattttgtcactaagagggggcgctgcaaggggcgtggctcgaaaatctcatggacacag 120 || ||||| |||||||| || || ||||| ||||| ||||| || ||||||||||||||| Sbjct: 30880 aactttgttactaagagaggacggtgcaaagggcggggctctaagatctcatggacacag 30821 Query: 121 gttgagacagggtcagcaatcacctggnaagtacccaagtgtggagctggttggggacga 180 ||||||||||| |||||||| || ||| |||||||||||||||||||| ||||||| || Sbjct: 30820 gttgagacaggttcagcaattacatgg-aagtacccaagtgtggagcttcttggggatga 30762 Query: 181 caccgttggagagttctactcggtagcgctgactaaggattaccagcaggccgatacagg 240 || ||||||||||||||||| || || ||||| ||||||||||||||||| || ||||| Sbjct: 30761 tactgttggagagttctactcagttgcactgacgaaggattaccagcaggcagacacagg 30702 Query: 241 gacaaagatgatccacaaggggaagaattcacgcagccggattatatccaagggtatctc 300 |||||| |||||||||||||| |||||||| || || |||||||||||||| |||||||| Sbjct: 30701 gacaaaaatgatccacaagggaaagaattcgcggagtcggattatatccaaaggtatctc 30642 Query: 301 agcggggaagtcaaggaattgctaccgtgggctggtccagatgaattcaggtgcagagaa 360 ||| ||||||||| ||||||||||||||||| |||||||||| || ||||| ||||| || Sbjct: 30641 agctgggaagtcacggaattgctaccgtgggttggtccagataaactcaggcgcagaaaa 30582 Query: 361 tgcgtataactcttctcagtgtgattcattgctgattggggacaaggctgctgctaacac 420 ||| ||||| ||||| ||||||||||| |||||||||||||| || |||||||| ||||| Sbjct: 30581 tgcttataattcttcacagtgtgattctttgctgattggggataacgctgctgccaacac 30522 Query: 421 ctatcccaccattcaggt 438 |||||| || |||||||| Sbjct: 30521 ctatccgactattcaggt 30504 Score = 125 bits (63), Expect = 2e-25 Identities = 105/119 (88%) Strand = Plus / Minus Query: 455 cgtgttgagcatgaagcaagcacatccaaaattggagaggaccagctgttttactttcag 514 |||||||||||||| |||||||| || ||||| || ||||||||||| ||||| || || Sbjct: 29456 cgtgttgagcatgaggcaagcacttcaaaaataggggaggaccagctattttatttccaa 29397 Query: 515 caaagggggatagatcatgaaaaggccgttgcagccatgatcggtggattctgtagggc 573 |||||||||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||| Sbjct: 29396 caaagggggatagaccatgaaaaggctgttgcagcgatgattggtggattctgcagggc 29338
>dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1088C09 Length = 154084 Score = 420 bits (212), Expect = e-114 Identities = 383/438 (87%), Gaps = 2/438 (0%) Strand = Plus / Minus Query: 1 agtactccaccgtgcagnattggtatgctggtgatgagnaagggcaaagggggcatttac 60 ||||||| || |||||| ||||||| ||||||||||| | ||| || |||||||||||| Sbjct: 124701 agtactctacggtgcagaattggtactctggtgatgaggagggg-aaggggggcatttac 124643 Query: 61 aattttgtcactaagagggggcgctgcaaggggcgtggctcgaaaatctcatggacacag 120 || ||||| |||||||| || || ||||| ||||| ||||| || ||||||||||||||| Sbjct: 124642 aactttgttactaagagaggacggtgcaaagggcggggctctaagatctcatggacacag 124583 Query: 121 gttgagacagggtcagcaatcacctggnaagtacccaagtgtggagctggttggggacga 180 ||||||||||| |||||||| || ||| |||||||||||||||||||| ||||||| || Sbjct: 124582 gttgagacaggttcagcaattacatgg-aagtacccaagtgtggagcttcttggggatga 124524 Query: 181 caccgttggagagttctactcggtagcgctgactaaggattaccagcaggccgatacagg 240 || ||||||||||||||||| || || ||||| ||||||||||||||||| || ||||| Sbjct: 124523 tactgttggagagttctactcagttgcactgacgaaggattaccagcaggcagacacagg 124464 Query: 241 gacaaagatgatccacaaggggaagaattcacgcagccggattatatccaagggtatctc 300 |||||| |||||||||||||| |||||||| || || |||||||||||||| |||||||| Sbjct: 124463 gacaaaaatgatccacaagggaaagaattcgcggagtcggattatatccaaaggtatctc 124404 Query: 301 agcggggaagtcaaggaattgctaccgtgggctggtccagatgaattcaggtgcagagaa 360 ||| ||||||||| ||||||||||||||||| |||||||||| || ||||| ||||| || Sbjct: 124403 agctgggaagtcacggaattgctaccgtgggttggtccagataaactcaggcgcagaaaa 124344 Query: 361 tgcgtataactcttctcagtgtgattcattgctgattggggacaaggctgctgctaacac 420 ||| ||||| ||||| ||||||||||| |||||||||||||| || |||||||| ||||| Sbjct: 124343 tgcttataattcttcacagtgtgattctttgctgattggggataacgctgctgccaacac 124284 Query: 421 ctatcccaccattcaggt 438 |||||| || |||||||| Sbjct: 124283 ctatccgactattcaggt 124266 Score = 125 bits (63), Expect = 2e-25 Identities = 105/119 (88%) Strand = Plus / Minus Query: 455 cgtgttgagcatgaagcaagcacatccaaaattggagaggaccagctgttttactttcag 514 |||||||||||||| |||||||| || ||||| || ||||||||||| ||||| || || Sbjct: 123218 cgtgttgagcatgaggcaagcacttcaaaaataggggaggaccagctattttatttccaa 123159 Query: 515 caaagggggatagatcatgaaaaggccgttgcagccatgatcggtggattctgtagggc 573 |||||||||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||| Sbjct: 123158 caaagggggatagaccatgaaaaggctgttgcagcgatgattggtggattctgcagggc 123100
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 191 gagttctactcggtagcgctgactaaggattaccagcaggccgatacagggacaaagatg 250 |||||||||||||| ||| |||| || ||||||||||||||||||| || || |||||| Sbjct: 2581244 gagttctactcggttgcggtgaccaacaattaccagcaggccgataccggcaccaagatg 2581185 Query: 251 atccacaa 258 |||||||| Sbjct: 2581184 atccacaa 2581177
>gb|AY943856.1| Nicotiana benthamiana non-intrinsic ABC protein mRNA, partial cds Length = 1638 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Plus Query: 185 gttggagagttctactcggtagcgctgactaaggattaccagcaggccgatacagggaca 244 ||||| || ||||| || || ||| ||||||| |||| |||||||| |||||||||||| Sbjct: 1171 gttggtgaattctattctgtggcgttgactaataattatcagcaggcggatacagggaca 1230 Query: 245 aagatgatccacaaggggaagaat 268 |||||||| ||||| ||||||||| Sbjct: 1231 aagatgatacacaaagggaagaat 1254
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 63.9 bits (32), Expect = 5e-07 Identities = 71/84 (84%) Strand = Plus / Plus Query: 173 ggggacgacaccgttggagagttctactcggtagcgctgactaaggattaccagcaggcc 232 |||||| || |||| || |||||||||||||| |||||||| || | |||||||||||| Sbjct: 4501596 ggggacaacgccgtgggcgagttctactcggtggcgctgaccaaccactaccagcaggcc 4501655 Query: 233 gatacagggacaaagatgatccac 256 || || || || |||||||||||| Sbjct: 4501656 gacaccggcaccaagatgatccac 4501679
>ref|NM_116715.3| Arabidopsis thaliana ATABC1 AT4G04770 (ATABC1) mRNA, complete cds Length = 1937 Score = 58.0 bits (29), Expect = 3e-05 Identities = 61/71 (85%), Gaps = 1/71 (1%) Strand = Plus / Plus Query: 1 agtactccaccgtgcagnattggtatgctggtgatgagnaagggcaaagggggcatttac 60 |||||||||| |||||| ||||||||||||| ||||| || || ||||| || ||||| Sbjct: 1087 agtactccacggtgcagaattggtatgctggggatgaacaa-ggtaaaggtgggatttat 1145 Query: 61 aattttgtcac 71 ||||||||||| Sbjct: 1146 aattttgtcac 1156 Score = 42.1 bits (21), Expect = 2.0 Identities = 39/45 (86%) Strand = Plus / Plus Query: 224 cagcaggccgatacagggacaaagatgatccacaaggggaagaat 268 ||||| || ||||||||||| |||||||| ||||| || |||||| Sbjct: 1308 cagcaagctgatacagggactaagatgattcacaaaggaaagaat 1352 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 106 atctcatggacacaggttgagacagggtc 134 ||||| ||||| ||||||||||||||||| Sbjct: 1191 atctcgtggactcaggttgagacagggtc 1219
>emb|AL161501.2|ATCHRIV13 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 13 Length = 200001 Score = 58.0 bits (29), Expect = 3e-05 Identities = 61/71 (85%), Gaps = 1/71 (1%) Strand = Plus / Minus Query: 1 agtactccaccgtgcagnattggtatgctggtgatgagnaagggcaaagggggcatttac 60 |||||||||| |||||| ||||||||||||| ||||| || || ||||| || ||||| Sbjct: 155780 agtactccacggtgcagaattggtatgctggggatgaacaa-ggtaaaggtgggatttat 155722 Query: 61 aattttgtcac 71 ||||||||||| Sbjct: 155721 aattttgtcac 155711 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 106 atctcatggacacaggttgagacagggtc 134 ||||| ||||| ||||||||||||||||| Sbjct: 155676 atctcgtggactcaggttgagacagggtc 155648 Score = 42.1 bits (21), Expect = 2.0 Identities = 39/45 (86%) Strand = Plus / Minus Query: 224 cagcaggccgatacagggacaaagatgatccacaaggggaagaat 268 ||||| || ||||||||||| |||||||| ||||| || |||||| Sbjct: 155559 cagcaagctgatacagggactaagatgattcacaaaggaaagaat 155515
>gb|AY142069.1| Arabidopsis thaliana At4g04770/T4B21_16 mRNA, complete cds Length = 1674 Score = 58.0 bits (29), Expect = 3e-05 Identities = 61/71 (85%), Gaps = 1/71 (1%) Strand = Plus / Plus Query: 1 agtactccaccgtgcagnattggtatgctggtgatgagnaagggcaaagggggcatttac 60 |||||||||| |||||| ||||||||||||| ||||| || || ||||| || ||||| Sbjct: 1022 agtactccacggtgcagaattggtatgctggggatgaacaa-ggtaaaggtgggatttat 1080 Query: 61 aattttgtcac 71 ||||||||||| Sbjct: 1081 aattttgtcac 1091 Score = 42.1 bits (21), Expect = 2.0 Identities = 39/45 (86%) Strand = Plus / Plus Query: 224 cagcaggccgatacagggacaaagatgatccacaaggggaagaat 268 ||||| || ||||||||||| |||||||| ||||| || |||||| Sbjct: 1243 cagcaagctgatacagggactaagatgattcacaaaggaaagaat 1287 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 106 atctcatggacacaggttgagacagggtc 134 ||||| ||||| ||||||||||||||||| Sbjct: 1126 atctcgtggactcaggttgagacagggtc 1154
>gb|AY056410.1| Arabidopsis thaliana AT4g04770/T4B21_16 mRNA, complete cds Length = 1842 Score = 58.0 bits (29), Expect = 3e-05 Identities = 61/71 (85%), Gaps = 1/71 (1%) Strand = Plus / Plus Query: 1 agtactccaccgtgcagnattggtatgctggtgatgagnaagggcaaagggggcatttac 60 |||||||||| |||||| ||||||||||||| ||||| || || ||||| || ||||| Sbjct: 1026 agtactccacggtgcagaattggtatgctggggatgaacaa-ggtaaaggtgggatttat 1084 Query: 61 aattttgtcac 71 ||||||||||| Sbjct: 1085 aattttgtcac 1095 Score = 42.1 bits (21), Expect = 2.0 Identities = 39/45 (86%) Strand = Plus / Plus Query: 224 cagcaggccgatacagggacaaagatgatccacaaggggaagaat 268 ||||| || ||||||||||| |||||||| ||||| || |||||| Sbjct: 1247 cagcaagctgatacagggactaagatgattcacaaaggaaagaat 1291 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 106 atctcatggacacaggttgagacagggtc 134 ||||| ||||| ||||||||||||||||| Sbjct: 1130 atctcgtggactcaggttgagacagggtc 1158
>gb|AY052195.1| Arabidopsis thaliana AT4g04770/T4B21_16 mRNA, complete cds Length = 1904 Score = 58.0 bits (29), Expect = 3e-05 Identities = 61/71 (85%), Gaps = 1/71 (1%) Strand = Plus / Plus Query: 1 agtactccaccgtgcagnattggtatgctggtgatgagnaagggcaaagggggcatttac 60 |||||||||| |||||| ||||||||||||| ||||| || || ||||| || ||||| Sbjct: 1089 agtactccacggtgcagaattggtatgctggggatgaacaa-ggtaaaggtgggatttat 1147 Query: 61 aattttgtcac 71 ||||||||||| Sbjct: 1148 aattttgtcac 1158 Score = 42.1 bits (21), Expect = 2.0 Identities = 39/45 (86%) Strand = Plus / Plus Query: 224 cagcaggccgatacagggacaaagatgatccacaaggggaagaat 268 ||||| || ||||||||||| |||||||| ||||| || |||||| Sbjct: 1310 cagcaagctgatacagggactaagatgattcacaaaggaaagaat 1354 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 106 atctcatggacacaggttgagacagggtc 134 ||||| ||||| ||||||||||||||||| Sbjct: 1193 atctcgtggactcaggttgagacagggtc 1221
>tpg|BK001497.1| TPA: TPA_exp: Arabidopsis thaliana putative ABC transporter 1 mRNA, complete cds; nuclear gene for plastid product Length = 1674 Score = 58.0 bits (29), Expect = 3e-05 Identities = 61/71 (85%), Gaps = 1/71 (1%) Strand = Plus / Plus Query: 1 agtactccaccgtgcagnattggtatgctggtgatgagnaagggcaaagggggcatttac 60 |||||||||| |||||| ||||||||||||| ||||| || || ||||| || ||||| Sbjct: 1022 agtactccacggtgcagaattggtatgctggggatgaacaa-ggtaaaggtgggatttat 1080 Query: 61 aattttgtcac 71 ||||||||||| Sbjct: 1081 aattttgtcac 1091 Score = 42.1 bits (21), Expect = 2.0 Identities = 39/45 (86%) Strand = Plus / Plus Query: 224 cagcaggccgatacagggacaaagatgatccacaaggggaagaat 268 ||||| || ||||||||||| |||||||| ||||| || |||||| Sbjct: 1243 cagcaagctgatacagggactaagatgattcacaaaggaaagaat 1287 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 106 atctcatggacacaggttgagacagggtc 134 ||||| ||||| ||||||||||||||||| Sbjct: 1126 atctcgtggactcaggttgagacagggtc 1154
>emb|BX827675.1|CNS0A3OT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS9ZB06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1812 Score = 58.0 bits (29), Expect = 3e-05 Identities = 61/71 (85%), Gaps = 1/71 (1%) Strand = Plus / Plus Query: 1 agtactccaccgtgcagnattggtatgctggtgatgagnaagggcaaagggggcatttac 60 |||||||||| |||||| ||||||||||||| ||||| || || ||||| || ||||| Sbjct: 1085 agtactccacggtgcagaattggtatgctggggatgaacaa-ggtaaaggtgggatttat 1143 Query: 61 aattttgtcac 71 ||||||||||| Sbjct: 1144 aattttgtcac 1154 Score = 42.1 bits (21), Expect = 2.0 Identities = 39/45 (86%) Strand = Plus / Plus Query: 224 cagcaggccgatacagggacaaagatgatccacaaggggaagaat 268 ||||| || ||||||||||| |||||||| ||||| || |||||| Sbjct: 1307 cagcaagctgatacagggactaagatgattcacaaaggaaagaat 1351 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 106 atctcatggacacaggttgagacagggtc 134 ||||| ||||| ||||||||||||||||| Sbjct: 1189 atctcgtggactcaggttgagacagggtc 1217
>gb|AF118223.2|T4B21 Arabidopsis thaliana BAC T4B21 Length = 91470 Score = 58.0 bits (29), Expect = 3e-05 Identities = 61/71 (85%), Gaps = 1/71 (1%) Strand = Plus / Minus Query: 1 agtactccaccgtgcagnattggtatgctggtgatgagnaagggcaaagggggcatttac 60 |||||||||| |||||| ||||||||||||| ||||| || || ||||| || ||||| Sbjct: 44102 agtactccacggtgcagaattggtatgctggggatgaacaa-ggtaaaggtgggatttat 44044 Query: 61 aattttgtcac 71 ||||||||||| Sbjct: 44043 aattttgtcac 44033 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 106 atctcatggacacaggttgagacagggtc 134 ||||| ||||| ||||||||||||||||| Sbjct: 43998 atctcgtggactcaggttgagacagggtc 43970 Score = 42.1 bits (21), Expect = 2.0 Identities = 39/45 (86%) Strand = Plus / Minus Query: 224 cagcaggccgatacagggacaaagatgatccacaaggggaagaat 268 ||||| || ||||||||||| |||||||| ||||| || |||||| Sbjct: 43881 cagcaagctgatacagggactaagatgattcacaaaggaaagaat 43837
>gb|AF490364.1| Ceratium horridum extrachromosomal minicircle putative ABC transporter membrane protein Ycf24 (ycf24) gene, partial cds; and putative ATP-dependent transporter Ycf16 (ycf16) gene, complete cds Length = 1954 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 103 aaaatctcatggacacaggttgagacagggtcagc 137 ||||| ||||||||||||||||||||||| ||||| Sbjct: 565 aaaatttcatggacacaggttgagacaggttcagc 599
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 54.0 bits (27), Expect = 5e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 191 gagttctactcggtagcgctgactaaggattaccagcaggccgatacagggacaaagatg 250 |||||||| ||||| ||||| || || | ||||||||||||||||| || || |||||| Sbjct: 1466666 gagttctattcggtggcgctcaccaacaactaccagcaggccgataccggcactaagatg 1466725 Query: 251 atccaca 257 ||||||| Sbjct: 1466726 atccaca 1466732
>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome Length = 5057531 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Plus Query: 224 cagcaggccgatacagggacaaagatgatccac 256 |||||||||||||| || ||||||||||||||| Sbjct: 1833478 cagcaggccgataccggcacaaagatgatccac 1833510
>gb|AE016828.2| Coxiella burnetii RSA 493, complete genome Length = 1995281 Score = 48.1 bits (24), Expect = 0.033 Identities = 39/44 (88%) Strand = Plus / Minus Query: 455 cgtgttgagcatgaagcaagcacatccaaaattggagaggacca 498 ||||||||||| ||||||| || || ||||||||||||||||| Sbjct: 1309740 cgtgttgagcacgaagcaactacctctaaaattggagaggacca 1309697
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 48.1 bits (24), Expect = 0.033 Identities = 33/36 (91%) Strand = Plus / Plus Query: 222 accagcaggccgatacagggacaaagatgatccaca 257 |||||||||||||||| || || ||||||||||||| Sbjct: 2001080 accagcaggccgataccggcaccaagatgatccaca 2001115
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome Length = 2593857 Score = 48.1 bits (24), Expect = 0.033 Identities = 56/66 (84%), Gaps = 1/66 (1%) Strand = Plus / Minus Query: 3 tactccaccgtgcagnattggtatgctggtgatgagnaagggcaaagggggcatttacaa 62 |||||||| ||||| | |||||||| || ||||| || |||||||||||||||||||| Sbjct: 487029 tactccactgtgcaaaactggtatgccggcgatga-aaatggcaaagggggcatttacaa 486971 Query: 63 ttttgt 68 ||||| Sbjct: 486970 ctttgt 486965
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 223 ccagcaggccgatacagggacaaagatgatccaca 257 ||||||||||||||| || || ||||||||||||| Sbjct: 1038567 ccagcaggccgataccggcaccaagatgatccaca 1038533
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 46.1 bits (23), Expect = 0.13 Identities = 59/71 (83%) Strand = Plus / Minus Query: 185 gttggagagttctactcggtagcgctgactaaggattaccagcaggccgatacagggaca 244 ||||| |||||||| ||||| ||| |||| || || | |||||||||||||| || || Sbjct: 116029 gttggcgagttctattcggttgcggtgaccaacaatcatcagcaggccgatacgggcacg 115970 Query: 245 aagatgatcca 255 ||||||||||| Sbjct: 115969 aagatgatcca 115959
>gb|AF329697.1| Xanthomonas oryzae pv. oryzae insertion sequence IS1051-X and insertion sequence IS1389-X, complete sequence Length = 17229 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Plus Query: 224 cagcaggccgatacagggacaaagatgatccaca 257 |||||||||||||| || || ||||||||||||| Sbjct: 4549 cagcaggccgataccggcaccaagatgatccaca 4582
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Minus Query: 224 cagcaggccgatacagggacaaagatgatccaca 257 |||||||||||||| || || ||||||||||||| Sbjct: 1413561 cagcaggccgataccggcaccaagatgatccaca 1413528
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 43 ggcaaagggggcatttacaattttgt 68 |||||||||||||||||||| ||||| Sbjct: 1473721 ggcaaagggggcatttacaactttgt 1473696 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 221 taccagcaggccgatacagggacaaagatgat 252 ||||||||||||||||| || || |||||||| Sbjct: 1473544 taccagcaggccgataccggcaccaagatgat 1473513
>gb|AE012389.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 297 of 460 of the complete genome Length = 13391 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Plus Query: 224 cagcaggccgatacagggacaaagatgatccaca 257 |||||||||||||| || || ||||||||||||| Sbjct: 9395 cagcaggccgataccggcaccaagatgatccaca 9428
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Minus Query: 224 cagcaggccgatacagggacaaagatgatccaca 257 |||||||||||||| || || ||||||||||||| Sbjct: 1634197 cagcaggccgataccggcaccaagatgatccaca 1634164
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 44.1 bits (22), Expect = 0.51 Identities = 58/70 (82%) Strand = Plus / Plus Query: 183 ccgttggagagttctactcggtagcgctgactaaggattaccagcaggccgatacaggga 242 ||||||| || || |||||||| |||||||| || || ||||| |||||||| |||| Sbjct: 2992656 ccgttggtgaattttactcggtggcgctgacaaataatatgcagcaagccgataccggga 2992715 Query: 243 caaagatgat 252 |||||||||| Sbjct: 2992716 caaagatgat 2992725
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Minus Query: 224 cagcaggccgatacagggacaaagatgatccaca 257 |||||||||||||| || || ||||||||||||| Sbjct: 1439215 cagcaggccgataccggcaccaagatgatccaca 1439182
>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome Length = 1709204 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 459 ttgagcatgaagcaagcacat 479 ||||||||||||||||||||| Sbjct: 79572 ttgagcatgaagcaagcacat 79552
>emb|BX537928.1|HSM806046 Homo sapiens genomic DNA; cDNA DKFZp686C2092 (from clone DKFZp686C2092) Length = 4427 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 516 aaagggggatagatcatgaaa 536 ||||||||||||||||||||| Sbjct: 710 aaagggggatagatcatgaaa 690
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Minus Query: 223 ccagcaggccgatacagggacaaagatgatcca 255 ||||||||||||||| || || ||||||||||| Sbjct: 2992651 ccagcaggccgataccggcaccaagatgatcca 2992619
>emb|BX827948.1|CNS0A3VL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH38ZA11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 678 Score = 42.1 bits (21), Expect = 2.0 Identities = 39/45 (86%) Strand = Plus / Plus Query: 224 cagcaggccgatacagggacaaagatgatccacaaggggaagaat 268 ||||| || ||||||||||| |||||||| ||||| || |||||| Sbjct: 51 cagcaagctgatacagggactaagatgattcacaaaggaaagaat 95
>gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete genome Length = 1308759 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 459 ttgagcatgaagcaagcacatccaaaatt 487 ||||||||||||||| |||||||||||| Sbjct: 724233 ttgagcatgaagcaacaacatccaaaatt 724261
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 224 cagcaggccgatacagggacaaagatgatcca 255 |||||||||||||| || || ||||||||||| Sbjct: 2150046 cagcaggccgataccggcaccaagatgatcca 2150015
>gb|AC092193.4| Bos taurus clone RP42-459A17, complete sequence Length = 258544 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 gaaaatctcatggacacagg 121 |||||||||||||||||||| Sbjct: 181771 gaaaatctcatggacacagg 181790
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 224 cagcaggccgatacagggacaaagatgatcca 255 |||||||||||||| || || ||||||||||| Sbjct: 2172127 cagcaggccgataccggcaccaagatgatcca 2172096
>gb|AC182692.2| Populus trichocarpa clone Pop1-44B2, complete sequence Length = 105327 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 462 agcatgaagcaagcacatccaaaa 485 |||||||| ||||||||||||||| Sbjct: 16261 agcatgaaacaagcacatccaaaa 16284
>gb|DQ277922.1| Mus musculus clone Bgal-Synd+.08b immunoglobulin lambda1 light chain variable region gene, partial cds Length = 279 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 ctgattggggacaaggctgc 411 |||||||||||||||||||| Sbjct: 193 ctgattggggacaaggctgc 212
>gb|AE017159.1| Chlamydophila pneumoniae TW-183, section 3 of 4 of the complete genome Length = 300066 Score = 40.1 bits (20), Expect = 8.0 Identities = 54/65 (83%), Gaps = 2/65 (3%) Strand = Plus / Minus Query: 6 tccaccgtgcagnattggtatgctggtgatgagnaa--gggcaaagggggcatttacaat 63 ||||| ||||| ||||||||||||||||| || || || ||||| |||||||| ||| Sbjct: 170247 tccacggtgcaaaattggtatgctggtgataagaaaacagggaaaggcggcatttataat 170188 Query: 64 tttgt 68 ||||| Sbjct: 170187 tttgt 170183
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 221 taccagcaggccgatacagggacaaagatgat 252 ||||||||||||||||| || || |||||||| Sbjct: 2210667 taccagcaggccgataccggcaccaagatgat 2210698 Score = 40.1 bits (20), Expect = 8.0 Identities = 55/66 (83%), Gaps = 1/66 (1%) Strand = Plus / Plus Query: 3 tactccaccgtgcagnattggtatgctggtgatgagnaagggcaaagggggcatttacaa 62 |||||||| |||||| | |||||||| || || || || ||||||||||||||||| || Sbjct: 2210451 tactccacggtgcagaactggtatgccggcgacga-aaacggcaaagggggcatttataa 2210509 Query: 63 ttttgt 68 ||||| Sbjct: 2210510 ctttgt 2210515
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 227 caggccgatacagggacaaagatgatccacaa 258 ||||||||||| || || |||||||||||||| Sbjct: 202839 caggccgataccggcaccaagatgatccacaa 202870
>gb|AE002161.1| Chlamydophila pneumoniae AR39, complete genome Length = 1229853 Score = 40.1 bits (20), Expect = 8.0 Identities = 54/65 (83%), Gaps = 2/65 (3%) Strand = Plus / Plus Query: 6 tccaccgtgcagnattggtatgctggtgatgagnaa--gggcaaagggggcatttacaat 63 ||||| ||||| ||||||||||||||||| || || || ||||| |||||||| ||| Sbjct: 67476 tccacggtgcaaaattggtatgctggtgataagaaaacagggaaaggcggcatttataat 67535 Query: 64 tttgt 68 ||||| Sbjct: 67536 tttgt 67540
>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome Length = 2088737 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 caccgttggagagttctact 200 |||||||||||||||||||| Sbjct: 1535225 caccgttggagagttctact 1535244
>gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome Length = 1230230 Score = 40.1 bits (20), Expect = 8.0 Identities = 54/65 (83%), Gaps = 2/65 (3%) Strand = Plus / Minus Query: 6 tccaccgtgcagnattggtatgctggtgatgagnaa--gggcaaagggggcatttacaat 63 ||||| ||||| ||||||||||||||||| || || || ||||| |||||||| ||| Sbjct: 774108 tccacggtgcaaaattggtatgctggtgataagaaaacagggaaaggcggcatttataat 774049 Query: 64 tttgt 68 ||||| Sbjct: 774048 tttgt 774044
>dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, complete sequence Length = 1226565 Score = 40.1 bits (20), Expect = 8.0 Identities = 54/65 (83%), Gaps = 2/65 (3%) Strand = Plus / Minus Query: 6 tccaccgtgcagnattggtatgctggtgatgagnaa--gggcaaagggggcatttacaat 63 ||||| ||||| ||||||||||||||||| || || || ||||| |||||||| ||| Sbjct: 773430 tccacggtgcaaaattggtatgctggtgataagaaaacagggaaaggcggcatttataat 773371 Query: 64 tttgt 68 ||||| Sbjct: 773370 tttgt 773366 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,532,772 Number of Sequences: 3902068 Number of extensions: 4532772 Number of successful extensions: 75904 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 75438 Number of HSP's gapped (non-prelim): 447 length of query: 585 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 562 effective length of database: 17,143,297,704 effective search space: 9634533309648 effective search space used: 9634533309648 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
