| Clone Name | basd25a13 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK121389.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128M19, full insert sequence Length = 3343 Score = 127 bits (64), Expect = 3e-26 Identities = 166/200 (83%) Strand = Plus / Plus Query: 129 ttgtcagagatcctcatttgtatgccttctcaattaggaaaggaagactggaggttaccg 188 |||| ||||| ||||| |||||| | |||||| | ||||| || | ||||||||| || | Sbjct: 2039 ttgttagagagcctcacttgtatacattctcattgaggaatgggaaactggaggtcactg 2098 Query: 189 agatcttcaatttttgccaagatgatttgttgactgaagacttgatgattcttgacacac 248 | || ||||| |||| |||||||||||| ||||||||||| ||||| ||||||| |||| Sbjct: 2099 aaattttcaacttttcacaagatgatttgctgactgaagacatgatggttcttgatacac 2158 Query: 249 acggggaggtctttatttggattggtcagtgcgtggaaccaaaagagaaacaaaaggcgt 308 | ||||| |||||| ||||||| |||||||| ||||| | |||||||| || ||||| | Sbjct: 2159 atggggaagtctttgtttggatgggtcagtgtgtggatgctaaagagaagcagaaggcat 2218 Query: 309 tcgacattggccagaaatat 328 | || ||||||||||||||| Sbjct: 2219 ttgaaattggccagaaatat 2238 Score = 91.7 bits (46), Expect = 2e-15 Identities = 82/94 (87%) Strand = Plus / Plus Query: 2 gttgctgagttcttgaagcctggtgcgacagtgaaacattgcaaggagggaacagagagt 61 |||||||| |||||||||||||||| | || |||||||||||||||||||| ||||| Sbjct: 1915 gttgctgaattcttgaagcctggtgttgctgtcaaacattgcaaggagggaactgagagc 1974 Query: 62 tctgctttctggtttgctcttgatggaaaacaga 95 ||||| || ||||||||||||| |||||| |||| Sbjct: 1975 tctgccttttggtttgctcttggtggaaagcaga 2008
>dbj|AK103910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033150O18, full insert sequence Length = 1711 Score = 127 bits (64), Expect = 3e-26 Identities = 166/200 (83%) Strand = Plus / Plus Query: 129 ttgtcagagatcctcatttgtatgccttctcaattaggaaaggaagactggaggttaccg 188 |||| ||||| ||||| |||||| | |||||| | ||||| || | ||||||||| || | Sbjct: 239 ttgttagagagcctcacttgtatacattctcattgaggaatgggaaactggaggtcactg 298 Query: 189 agatcttcaatttttgccaagatgatttgttgactgaagacttgatgattcttgacacac 248 | || ||||| |||| |||||||||||| ||||||||||| ||||| ||||||| |||| Sbjct: 299 aaattttcaacttttcacaagatgatttgctgactgaagacatgatggttcttgatacac 358 Query: 249 acggggaggtctttatttggattggtcagtgcgtggaaccaaaagagaaacaaaaggcgt 308 | ||||| |||||| ||||||| |||||||| ||||| | |||||||| || ||||| | Sbjct: 359 atggggaagtctttgtttggatgggtcagtgtgtggatgctaaagagaagcagaaggcat 418 Query: 309 tcgacattggccagaaatat 328 | || ||||||||||||||| Sbjct: 419 ttgaaattggccagaaatat 438 Score = 91.7 bits (46), Expect = 2e-15 Identities = 82/94 (87%) Strand = Plus / Plus Query: 2 gttgctgagttcttgaagcctggtgcgacagtgaaacattgcaaggagggaacagagagt 61 |||||||| |||||||||||||||| | || |||||||||||||||||||| ||||| Sbjct: 115 gttgctgaattcttgaagcctggtgttgctgtcaaacattgcaaggagggaactgagagc 174 Query: 62 tctgctttctggtttgctcttgatggaaaacaga 95 ||||| || ||||||||||||| |||||| |||| Sbjct: 175 tctgccttttggtttgctcttggtggaaagcaga 208
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 97.6 bits (49), Expect = 2e-17 Identities = 100/117 (85%) Strand = Plus / Plus Query: 206 caagatgatttgttgactgaagacttgatgattcttgacacacacggggaggtctttatt 265 |||||||||||| ||||||||||| ||||| ||||||| ||||| ||||| |||||| || Sbjct: 13623143 caagatgatttgctgactgaagacatgatggttcttgatacacatggggaagtctttgtt 13623202 Query: 266 tggattggtcagtgcgtggaaccaaaagagaaacaaaaggcgttcgacattggccag 322 ||||| |||||||| ||||| | |||||||| || ||||| || || ||||||||| Sbjct: 13623203 tggatgggtcagtgtgtggatgctaaagagaagcagaaggcatttgaaattggccag 13623259 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 35 aaacattgcaaggagggaacagagagttctgctttctggtttgctcttgatggaaaacag 94 |||||||||||||||||||| ||||| ||||| || ||||||||||||| |||||| ||| Sbjct: 13622757 aaacattgcaaggagggaactgagagctctgccttttggtttgctcttggtggaaagcag 13622816 Query: 95 a 95 | Sbjct: 13622817 a 13622817 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 attggccagaaatatataga 333 |||||||||||||||||||| Sbjct: 2063099 attggccagaaatatataga 2063080
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 97.6 bits (49), Expect = 2e-17 Identities = 100/117 (85%) Strand = Plus / Plus Query: 206 caagatgatttgttgactgaagacttgatgattcttgacacacacggggaggtctttatt 265 |||||||||||| ||||||||||| ||||| ||||||| ||||| ||||| |||||| || Sbjct: 13618118 caagatgatttgctgactgaagacatgatggttcttgatacacatggggaagtctttgtt 13618177 Query: 266 tggattggtcagtgcgtggaaccaaaagagaaacaaaaggcgttcgacattggccag 322 ||||| |||||||| ||||| | |||||||| || ||||| || || ||||||||| Sbjct: 13618178 tggatgggtcagtgtgtggatgctaaagagaagcagaaggcatttgaaattggccag 13618234 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 35 aaacattgcaaggagggaacagagagttctgctttctggtttgctcttgatggaaaacag 94 |||||||||||||||||||| ||||| ||||| || ||||||||||||| |||||| ||| Sbjct: 13617732 aaacattgcaaggagggaactgagagctctgccttttggtttgctcttggtggaaagcag 13617791 Query: 95 a 95 | Sbjct: 13617792 a 13617792 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 attggccagaaatatataga 333 |||||||||||||||||||| Sbjct: 2063111 attggccagaaatatataga 2063092
>gb|AC137076.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0033D20, from chromosome 3, complete sequence Length = 128707 Score = 97.6 bits (49), Expect = 2e-17 Identities = 100/117 (85%) Strand = Plus / Plus Query: 206 caagatgatttgttgactgaagacttgatgattcttgacacacacggggaggtctttatt 265 |||||||||||| ||||||||||| ||||| ||||||| ||||| ||||| |||||| || Sbjct: 13815 caagatgatttgctgactgaagacatgatggttcttgatacacatggggaagtctttgtt 13874 Query: 266 tggattggtcagtgcgtggaaccaaaagagaaacaaaaggcgttcgacattggccag 322 ||||| |||||||| ||||| | |||||||| || ||||| || || ||||||||| Sbjct: 13875 tggatgggtcagtgtgtggatgctaaagagaagcagaaggcatttgaaattggccag 13931 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 35 aaacattgcaaggagggaacagagagttctgctttctggtttgctcttgatggaaaacag 94 |||||||||||||||||||| ||||| ||||| || ||||||||||||| |||||| ||| Sbjct: 13429 aaacattgcaaggagggaactgagagctctgccttttggtttgctcttggtggaaagcag 13488 Query: 95 a 95 | Sbjct: 13489 a 13489
>emb|AJ577853.1|NTA577853 Nicotiana tabacum partial mRNA for villin 2 (vln2 gene) Length = 2000 Score = 79.8 bits (40), Expect = 6e-12 Identities = 91/108 (84%) Strand = Plus / Plus Query: 1 ggttgctgagttcttgaagcctggtgcgacagtgaaacattgcaaggagggaacagagag 60 |||||| || ||||||||||| || |||||||||||||| || |||||||||||||| Sbjct: 436 ggttgcagaattcttgaagccaggagcgacagtgaaacacactaaagagggaacagagag 495 Query: 61 ttctgctttctggtttgctcttgatggaaaacagagctatacaagcaa 108 || ||||||||||||||| ||| |||||||| || ||||| ||||| Sbjct: 496 ctcagctttctggtttgctgttggaggaaaacaaagttataccagcaa 543
>gb|AY104332.1| Zea mays PCO109929 mRNA sequence Length = 989 Score = 60.0 bits (30), Expect = 5e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 266 tggattggtcagtgcgtggaaccaaaagagaaacaaaaggcgttcgacattggccagaaa 325 ||||| |||||||||||||| ||||||| ||||| || || || ||||||||||||||| Sbjct: 17 tggatgggtcagtgcgtggagacaaaagaaaaacagaaagcatttgacattggccagaaa 76 Query: 326 ta 327 || Sbjct: 77 ta 78
>gb|AF088901.1|AF088901 Lilium longiflorum actin bundling protein ABP135 (Y5-7) mRNA, complete cds Length = 3295 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 44 aaggagggaacagagagttctgctttctggtttgctcttgatggaaaaca 93 ||||||||||||||||| ||||| || |||||||| |||| ||| ||||| Sbjct: 1902 aaggagggaacagagagctctgcattttggtttgcacttggtgggaaaca 1951 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 caagatgatttgttgactga 225 |||||||||||||||||||| Sbjct: 2061 caagatgatttgttgactga 2080
>emb|AJ577852.1|NTA577852 Nicotiana tabacum partial mRNA for villin 1 (vln1 gene) Length = 1938 Score = 48.1 bits (24), Expect = 0.021 Identities = 39/44 (88%) Strand = Plus / Plus Query: 50 ggaacagagagttctgctttctggtttgctcttgatggaaaaca 93 ||||||||||| || |||||||||||||||||| |||||||| Sbjct: 616 ggaacagagagctcaactttctggtttgctcttggaggaaaaca 659
>gb|BC057086.1| Mus musculus LIM domain only 3, mRNA (cDNA clone MGC:67530 IMAGE:5720992), complete cds Length = 1245 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 143 catttgtatgccttctcaatta 164 |||||||||||||||||||||| Sbjct: 441 catttgtatgccttctcaatta 420
>ref|XM_539381.2| PREDICTED: Canis familiaris similar to smoothened (LOC482262), mRNA Length = 2163 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 75 ttgctcttgatggaaaacagag 96 |||||||||||||||||||||| Sbjct: 1088 ttgctcttgatggaaaacagag 1067
>gb|AC133491.35| Rattus norvegicus clone rp32-252i5, complete sequence Length = 150430 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 49 gggaacagagagttctgctttc 70 |||||||||||||||||||||| Sbjct: 73689 gggaacagagagttctgctttc 73668 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 49 gggaacagagagttctgctttc 70 |||||||||||||||||||||| Sbjct: 66350 gggaacagagagttctgctttc 66371
>emb|CR378662.1| M.truncatula DNA sequence from clone MTH2-41N19 on chromosome 3, complete sequence Length = 119227 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 66 ctttctggtttgctcttgatggaaa 90 |||||||||||||||| |||||||| Sbjct: 101614 ctttctggtttgctctcgatggaaa 101590
>gb|AY045572.1| Nicotiana tabacum bZIP transcription factor BZI-4 mRNA, complete cds Length = 563 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 tcttcaatttttgccaagatg 212 ||||||||||||||||||||| Sbjct: 358 tcttcaatttttgccaagatg 338
>gb|AF453932.1|AF453932 Oryza sativa villin-like protein mRNA, partial cds Length = 804 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 2 gttgctgagttcttgaagcctggtg 26 |||||||| |||||||||||||||| Sbjct: 748 gttgctgaattcttgaagcctggtg 772
>gb|AC153849.8| Mus musculus BAC RP23-97L11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205220 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 63 ctgctttctggtttgctcttgatgg 87 |||||||||||||||||||| |||| Sbjct: 29964 ctgctttctggtttgctcttcatgg 29988
>gb|AC157093.4| Mus musculus 6 BAC RP24-338D12 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 185068 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 63 ctgctttctggtttgctcttgatgg 87 |||||||||||||||||||| |||| Sbjct: 162144 ctgctttctggtttgctcttcatgg 162168
>emb|AL672284.15| Mouse DNA sequence from clone RP23-39I7 on chromosome X, complete sequence Length = 227918 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 63 ctgctttctggtttgctcttgatgg 87 |||||||||||||||||||| |||| Sbjct: 23396 ctgctttctggtttgctcttcatgg 23420
>gb|AC118132.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0003A09, complete sequence Length = 167222 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 attggccagaaatatataga 333 |||||||||||||||||||| Sbjct: 100522 attggccagaaatatataga 100503
>gb|AC154494.2| Mus musculus BAC clone RP24-111G24 from chromosome 9, complete sequence Length = 182959 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 tggaaccaaaagagaaacaa 301 |||||||||||||||||||| Sbjct: 22844 tggaaccaaaagagaaacaa 22863
>gb|AC129573.16| Mus musculus chromosome 6, clone RP23-457B5, complete sequence Length = 178159 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 aaaagagaaacaaaaggcgt 308 |||||||||||||||||||| Sbjct: 152236 aaaagagaaacaaaaggcgt 152217
>gb|AC124128.11| Mus musculus chromosome 6, clone RP23-158O11, complete sequence Length = 208907 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 aaaagagaaacaaaaggcgt 308 |||||||||||||||||||| Sbjct: 37868 aaaagagaaacaaaaggcgt 37849
>gb|AC136833.3| Rattus norvegicus 1 BAC CH230-184E24 (Children's Hospital Oakland Research Institute) complete sequence Length = 186074 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 49 gggaacagagagttctgctttctg 72 |||||||||| ||||||||||||| Sbjct: 144718 gggaacagagtgttctgctttctg 144695
>emb|AL442064.10| Human DNA sequence from clone RP11-272D1 on chromosome 9 Contains the 3' end of the EDG2 gene for endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor, 2, complete sequence Length = 169905 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 accaaaagagaaacaaaagg 305 |||||||||||||||||||| Sbjct: 103601 accaaaagagaaacaaaagg 103620
>emb|AL672177.9| Mouse DNA sequence from clone RP23-292D8 on chromosome 11 Contains the 3' end of the Gria1 gene for glutamate receptor, ionotropic, AMPA1 (alpha 1), complete sequence Length = 157692 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 ggaacagagagttctgcttt 69 |||||||||||||||||||| Sbjct: 15096 ggaacagagagttctgcttt 15115
>gb|AC060226.39| Homo sapiens 12 BAC RP11-101P14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 132604 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 cctcatttgtatgccttctc 159 |||||||||||||||||||| Sbjct: 34568 cctcatttgtatgccttctc 34549
>gb|AC018799.8| Homo sapiens BAC clone RP11-125N8 from 2, complete sequence Length = 151107 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 340 gatgtcgattgaagatctttcccc 363 |||||||||| ||||||||||||| Sbjct: 106940 gatgtcgatttaagatctttcccc 106917
>emb|CT027665.2| Medicago truncatula chromosome 5 clone mth2-69e15, COMPLETE SEQUENCE Length = 130069 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 gaaccaaaagagaaacaaaa 303 |||||||||||||||||||| Sbjct: 33834 gaaccaaaagagaaacaaaa 33853
>gb|AC155928.2| Mus musculus BAC clone RP24-70N20 from 9, complete sequence Length = 239304 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 tggaaccaaaagagaaacaa 301 |||||||||||||||||||| Sbjct: 174786 tggaaccaaaagagaaacaa 174805
>gb|AC007157.6|AC007157 Homo sapiens, clone hRPK.78_A_1, complete sequence Length = 152937 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 accaaaagagaaacaaaagg 305 |||||||||||||||||||| Sbjct: 2148 accaaaagagaaacaaaagg 2167
>gb|AC135187.3| Mus musculus BAC clone RP24-263A3 from 5, complete sequence Length = 176333 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 accaaaagagaaacaaaagg 305 |||||||||||||||||||| Sbjct: 136085 accaaaagagaaacaaaagg 136066
>gb|AC140356.3| Mus musculus BAC clone RP23-216B19 from 6, complete sequence Length = 211504 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 agttctgctttctggtttgctctt 82 |||||||||| ||||||||||||| Sbjct: 114546 agttctgcttactggtttgctctt 114523
>emb|AL606974.9| Mouse DNA sequence from clone RP23-39E21 on chromosome 4, complete sequence Length = 232587 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tgccttctcaattaggaaag 170 |||||||||||||||||||| Sbjct: 43921 tgccttctcaattaggaaag 43902
>emb|AL670670.7| Mouse DNA sequence from clone RP23-234O7 on chromosome X, complete sequence Length = 91811 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tctgctttctggtttgctct 81 |||||||||||||||||||| Sbjct: 69307 tctgctttctggtttgctct 69288 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,917,633 Number of Sequences: 3902068 Number of extensions: 3917633 Number of successful extensions: 81312 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81143 Number of HSP's gapped (non-prelim): 166 length of query: 379 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 357 effective length of database: 17,147,199,772 effective search space: 6121550318604 effective search space used: 6121550318604 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)