ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd25a13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK121389.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 3e-26
2dbj|AK103910.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 3e-26
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 98 2e-17
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 98 2e-17
5gb|AC137076.1| Genomic sequence for Oryza sativa, Nipponbare str... 98 2e-17
6emb|AJ577853.1|NTA577853 Nicotiana tabacum partial mRNA for vill... 80 6e-12
7gb|AY104332.1| Zea mays PCO109929 mRNA sequence 60 5e-06
8gb|AF088901.1|AF088901 Lilium longiflorum actin bundling protein... 52 0.001
9emb|AJ577852.1|NTA577852 Nicotiana tabacum partial mRNA for vill... 48 0.021
10gb|BC057086.1| Mus musculus LIM domain only 3, mRNA (cDNA clone ... 44 0.32
11ref|XM_539381.2| PREDICTED: Canis familiaris similar to smoothen... 44 0.32
12gb|AC133491.35| Rattus norvegicus clone rp32-252i5, complete seq... 44 0.32
13emb|CR378662.1| M.truncatula DNA sequence from clone MTH2-41N19 ... 42 1.3
14gb|AY045572.1| Nicotiana tabacum bZIP transcription factor BZI-4... 42 1.3
15gb|AF453932.1|AF453932 Oryza sativa villin-like protein mRNA, pa... 42 1.3
16gb|AC153849.8| Mus musculus BAC RP23-97L11 (Roswell Park Cancer... 42 1.3
17gb|AC157093.4| Mus musculus 6 BAC RP24-338D12 (Roswell Park Canc... 42 1.3
18emb|AL672284.15| Mouse DNA sequence from clone RP23-39I7 on chro... 42 1.3
19gb|AC118132.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.1
20gb|AC154494.2| Mus musculus BAC clone RP24-111G24 from chromosom... 40 5.1
21gb|AC129573.16| Mus musculus chromosome 6, clone RP23-457B5, com... 40 5.1
22gb|AC124128.11| Mus musculus chromosome 6, clone RP23-158O11, co... 40 5.1
23gb|AC136833.3| Rattus norvegicus 1 BAC CH230-184E24 (Children's ... 40 5.1
24emb|AL442064.10| Human DNA sequence from clone RP11-272D1 on chr... 40 5.1
25emb|AL672177.9| Mouse DNA sequence from clone RP23-292D8 on chro... 40 5.1
26gb|AC060226.39| Homo sapiens 12 BAC RP11-101P14 (Roswell Park Ca... 40 5.1
27gb|AC018799.8| Homo sapiens BAC clone RP11-125N8 from 2, complet... 40 5.1
28emb|CT027665.2| Medicago truncatula chromosome 5 clone mth2-69e1... 40 5.1
29gb|AC155928.2| Mus musculus BAC clone RP24-70N20 from 9, complet... 40 5.1
30gb|AC007157.6|AC007157 Homo sapiens, clone hRPK.78_A_1, complete... 40 5.1
31gb|AC135187.3| Mus musculus BAC clone RP24-263A3 from 5, complet... 40 5.1
32gb|AC140356.3| Mus musculus BAC clone RP23-216B19 from 6, comple... 40 5.1
33emb|AL606974.9| Mouse DNA sequence from clone RP23-39E21 on chro... 40 5.1
34emb|AL670670.7| Mouse DNA sequence from clone RP23-234O7 on chro... 40 5.1

>dbj|AK121389.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128M19, full
            insert sequence
          Length = 3343

 Score =  127 bits (64), Expect = 3e-26
 Identities = 166/200 (83%)
 Strand = Plus / Plus

                                                                        
Query: 129  ttgtcagagatcctcatttgtatgccttctcaattaggaaaggaagactggaggttaccg 188
            |||| ||||| ||||| |||||| | |||||| | ||||| || | ||||||||| || |
Sbjct: 2039 ttgttagagagcctcacttgtatacattctcattgaggaatgggaaactggaggtcactg 2098

                                                                        
Query: 189  agatcttcaatttttgccaagatgatttgttgactgaagacttgatgattcttgacacac 248
            | || ||||| ||||  |||||||||||| ||||||||||| ||||| ||||||| ||||
Sbjct: 2099 aaattttcaacttttcacaagatgatttgctgactgaagacatgatggttcttgatacac 2158

                                                                        
Query: 249  acggggaggtctttatttggattggtcagtgcgtggaaccaaaagagaaacaaaaggcgt 308
            | ||||| |||||| ||||||| |||||||| |||||  | |||||||| || ||||| |
Sbjct: 2159 atggggaagtctttgtttggatgggtcagtgtgtggatgctaaagagaagcagaaggcat 2218

                                
Query: 309  tcgacattggccagaaatat 328
            | || |||||||||||||||
Sbjct: 2219 ttgaaattggccagaaatat 2238



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 82/94 (87%)
 Strand = Plus / Plus

                                                                        
Query: 2    gttgctgagttcttgaagcctggtgcgacagtgaaacattgcaaggagggaacagagagt 61
            |||||||| ||||||||||||||||   | || |||||||||||||||||||| ||||| 
Sbjct: 1915 gttgctgaattcttgaagcctggtgttgctgtcaaacattgcaaggagggaactgagagc 1974

                                              
Query: 62   tctgctttctggtttgctcttgatggaaaacaga 95
            ||||| || ||||||||||||| |||||| ||||
Sbjct: 1975 tctgccttttggtttgctcttggtggaaagcaga 2008



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>dbj|AK103910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033150O18, full
           insert sequence
          Length = 1711

 Score =  127 bits (64), Expect = 3e-26
 Identities = 166/200 (83%)
 Strand = Plus / Plus

                                                                       
Query: 129 ttgtcagagatcctcatttgtatgccttctcaattaggaaaggaagactggaggttaccg 188
           |||| ||||| ||||| |||||| | |||||| | ||||| || | ||||||||| || |
Sbjct: 239 ttgttagagagcctcacttgtatacattctcattgaggaatgggaaactggaggtcactg 298

                                                                       
Query: 189 agatcttcaatttttgccaagatgatttgttgactgaagacttgatgattcttgacacac 248
           | || ||||| ||||  |||||||||||| ||||||||||| ||||| ||||||| ||||
Sbjct: 299 aaattttcaacttttcacaagatgatttgctgactgaagacatgatggttcttgatacac 358

                                                                       
Query: 249 acggggaggtctttatttggattggtcagtgcgtggaaccaaaagagaaacaaaaggcgt 308
           | ||||| |||||| ||||||| |||||||| |||||  | |||||||| || ||||| |
Sbjct: 359 atggggaagtctttgtttggatgggtcagtgtgtggatgctaaagagaagcagaaggcat 418

                               
Query: 309 tcgacattggccagaaatat 328
           | || |||||||||||||||
Sbjct: 419 ttgaaattggccagaaatat 438



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 82/94 (87%)
 Strand = Plus / Plus

                                                                       
Query: 2   gttgctgagttcttgaagcctggtgcgacagtgaaacattgcaaggagggaacagagagt 61
           |||||||| ||||||||||||||||   | || |||||||||||||||||||| ||||| 
Sbjct: 115 gttgctgaattcttgaagcctggtgttgctgtcaaacattgcaaggagggaactgagagc 174

                                             
Query: 62  tctgctttctggtttgctcttgatggaaaacaga 95
           ||||| || ||||||||||||| |||||| ||||
Sbjct: 175 tctgccttttggtttgctcttggtggaaagcaga 208



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 100/117 (85%)
 Strand = Plus / Plus

                                                                            
Query: 206      caagatgatttgttgactgaagacttgatgattcttgacacacacggggaggtctttatt 265
                |||||||||||| ||||||||||| ||||| ||||||| ||||| ||||| |||||| ||
Sbjct: 13623143 caagatgatttgctgactgaagacatgatggttcttgatacacatggggaagtctttgtt 13623202

                                                                         
Query: 266      tggattggtcagtgcgtggaaccaaaagagaaacaaaaggcgttcgacattggccag 322
                ||||| |||||||| |||||  | |||||||| || ||||| || || |||||||||
Sbjct: 13623203 tggatgggtcagtgtgtggatgctaaagagaagcagaaggcatttgaaattggccag 13623259



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                            
Query: 35       aaacattgcaaggagggaacagagagttctgctttctggtttgctcttgatggaaaacag 94
                |||||||||||||||||||| ||||| ||||| || ||||||||||||| |||||| |||
Sbjct: 13622757 aaacattgcaaggagggaactgagagctctgccttttggtttgctcttggtggaaagcag 13622816

                 
Query: 95       a 95
                |
Sbjct: 13622817 a 13622817



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 314     attggccagaaatatataga 333
               ||||||||||||||||||||
Sbjct: 2063099 attggccagaaatatataga 2063080



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 100/117 (85%)
 Strand = Plus / Plus

                                                                            
Query: 206      caagatgatttgttgactgaagacttgatgattcttgacacacacggggaggtctttatt 265
                |||||||||||| ||||||||||| ||||| ||||||| ||||| ||||| |||||| ||
Sbjct: 13618118 caagatgatttgctgactgaagacatgatggttcttgatacacatggggaagtctttgtt 13618177

                                                                         
Query: 266      tggattggtcagtgcgtggaaccaaaagagaaacaaaaggcgttcgacattggccag 322
                ||||| |||||||| |||||  | |||||||| || ||||| || || |||||||||
Sbjct: 13618178 tggatgggtcagtgtgtggatgctaaagagaagcagaaggcatttgaaattggccag 13618234



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                            
Query: 35       aaacattgcaaggagggaacagagagttctgctttctggtttgctcttgatggaaaacag 94
                |||||||||||||||||||| ||||| ||||| || ||||||||||||| |||||| |||
Sbjct: 13617732 aaacattgcaaggagggaactgagagctctgccttttggtttgctcttggtggaaagcag 13617791

                 
Query: 95       a 95
                |
Sbjct: 13617792 a 13617792



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 314     attggccagaaatatataga 333
               ||||||||||||||||||||
Sbjct: 2063111 attggccagaaatatataga 2063092



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>gb|AC137076.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0033D20, from chromosome 3, complete sequence
          Length = 128707

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 100/117 (85%)
 Strand = Plus / Plus

                                                                         
Query: 206   caagatgatttgttgactgaagacttgatgattcttgacacacacggggaggtctttatt 265
             |||||||||||| ||||||||||| ||||| ||||||| ||||| ||||| |||||| ||
Sbjct: 13815 caagatgatttgctgactgaagacatgatggttcttgatacacatggggaagtctttgtt 13874

                                                                      
Query: 266   tggattggtcagtgcgtggaaccaaaagagaaacaaaaggcgttcgacattggccag 322
             ||||| |||||||| |||||  | |||||||| || ||||| || || |||||||||
Sbjct: 13875 tggatgggtcagtgtgtggatgctaaagagaagcagaaggcatttgaaattggccag 13931



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                         
Query: 35    aaacattgcaaggagggaacagagagttctgctttctggtttgctcttgatggaaaacag 94
             |||||||||||||||||||| ||||| ||||| || ||||||||||||| |||||| |||
Sbjct: 13429 aaacattgcaaggagggaactgagagctctgccttttggtttgctcttggtggaaagcag 13488

              
Query: 95    a 95
             |
Sbjct: 13489 a 13489



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>emb|AJ577853.1|NTA577853 Nicotiana tabacum partial mRNA for villin 2 (vln2 gene)
          Length = 2000

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 91/108 (84%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggttgctgagttcttgaagcctggtgcgacagtgaaacattgcaaggagggaacagagag 60
           |||||| || ||||||||||| || ||||||||||||||    || ||||||||||||||
Sbjct: 436 ggttgcagaattcttgaagccaggagcgacagtgaaacacactaaagagggaacagagag 495

                                                           
Query: 61  ttctgctttctggtttgctcttgatggaaaacagagctatacaagcaa 108
            || ||||||||||||||| |||  |||||||| || ||||| |||||
Sbjct: 496 ctcagctttctggtttgctgttggaggaaaacaaagttataccagcaa 543



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>gb|AY104332.1| Zea mays PCO109929 mRNA sequence
          Length = 989

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 266 tggattggtcagtgcgtggaaccaaaagagaaacaaaaggcgttcgacattggccagaaa 325
           ||||| ||||||||||||||  ||||||| ||||| || || || |||||||||||||||
Sbjct: 17  tggatgggtcagtgcgtggagacaaaagaaaaacagaaagcatttgacattggccagaaa 76

             
Query: 326 ta 327
           ||
Sbjct: 77  ta 78



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>gb|AF088901.1|AF088901 Lilium longiflorum actin bundling protein ABP135 (Y5-7) mRNA,
            complete cds
          Length = 3295

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                              
Query: 44   aaggagggaacagagagttctgctttctggtttgctcttgatggaaaaca 93
            ||||||||||||||||| ||||| || |||||||| |||| ||| |||||
Sbjct: 1902 aaggagggaacagagagctctgcattttggtttgcacttggtgggaaaca 1951



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 206  caagatgatttgttgactga 225
            ||||||||||||||||||||
Sbjct: 2061 caagatgatttgttgactga 2080



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>emb|AJ577852.1|NTA577852 Nicotiana tabacum partial mRNA for villin 1 (vln1 gene)
          Length = 1938

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 50  ggaacagagagttctgctttctggtttgctcttgatggaaaaca 93
           ||||||||||| ||  ||||||||||||||||||  ||||||||
Sbjct: 616 ggaacagagagctcaactttctggtttgctcttggaggaaaaca 659



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>gb|BC057086.1| Mus musculus LIM domain only 3, mRNA (cDNA clone MGC:67530
           IMAGE:5720992), complete cds
          Length = 1245

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 143 catttgtatgccttctcaatta 164
           ||||||||||||||||||||||
Sbjct: 441 catttgtatgccttctcaatta 420



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>ref|XM_539381.2| PREDICTED: Canis familiaris similar to smoothened (LOC482262), mRNA
          Length = 2163

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 75   ttgctcttgatggaaaacagag 96
            ||||||||||||||||||||||
Sbjct: 1088 ttgctcttgatggaaaacagag 1067



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>gb|AC133491.35| Rattus norvegicus clone rp32-252i5, complete sequence
          Length = 150430

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 49    gggaacagagagttctgctttc 70
             ||||||||||||||||||||||
Sbjct: 73689 gggaacagagagttctgctttc 73668



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 49    gggaacagagagttctgctttc 70
             ||||||||||||||||||||||
Sbjct: 66350 gggaacagagagttctgctttc 66371



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>emb|CR378662.1| M.truncatula DNA sequence from clone MTH2-41N19 on chromosome 3, complete
              sequence
          Length = 119227

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 66     ctttctggtttgctcttgatggaaa 90
              |||||||||||||||| ||||||||
Sbjct: 101614 ctttctggtttgctctcgatggaaa 101590



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>gb|AY045572.1| Nicotiana tabacum bZIP transcription factor BZI-4 mRNA, complete
           cds
          Length = 563

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 192 tcttcaatttttgccaagatg 212
           |||||||||||||||||||||
Sbjct: 358 tcttcaatttttgccaagatg 338



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>gb|AF453932.1|AF453932 Oryza sativa villin-like protein mRNA, partial cds
          Length = 804

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 2   gttgctgagttcttgaagcctggtg 26
           |||||||| ||||||||||||||||
Sbjct: 748 gttgctgaattcttgaagcctggtg 772



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>gb|AC153849.8| Mus musculus  BAC RP23-97L11 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 205220

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 63    ctgctttctggtttgctcttgatgg 87
             |||||||||||||||||||| ||||
Sbjct: 29964 ctgctttctggtttgctcttcatgg 29988



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>gb|AC157093.4| Mus musculus 6 BAC RP24-338D12 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 185068

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 63     ctgctttctggtttgctcttgatgg 87
              |||||||||||||||||||| ||||
Sbjct: 162144 ctgctttctggtttgctcttcatgg 162168



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>emb|AL672284.15| Mouse DNA sequence from clone RP23-39I7 on chromosome X, complete
             sequence
          Length = 227918

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 63    ctgctttctggtttgctcttgatgg 87
             |||||||||||||||||||| ||||
Sbjct: 23396 ctgctttctggtttgctcttcatgg 23420



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>gb|AC118132.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0003A09,
              complete sequence
          Length = 167222

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 314    attggccagaaatatataga 333
              ||||||||||||||||||||
Sbjct: 100522 attggccagaaatatataga 100503



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>gb|AC154494.2| Mus musculus BAC clone RP24-111G24 from chromosome 9, complete sequence
          Length = 182959

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 282   tggaaccaaaagagaaacaa 301
             ||||||||||||||||||||
Sbjct: 22844 tggaaccaaaagagaaacaa 22863



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>gb|AC129573.16| Mus musculus chromosome 6, clone RP23-457B5, complete sequence
          Length = 178159

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 289    aaaagagaaacaaaaggcgt 308
              ||||||||||||||||||||
Sbjct: 152236 aaaagagaaacaaaaggcgt 152217



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>gb|AC124128.11| Mus musculus chromosome 6, clone RP23-158O11, complete sequence
          Length = 208907

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   aaaagagaaacaaaaggcgt 308
             ||||||||||||||||||||
Sbjct: 37868 aaaagagaaacaaaaggcgt 37849



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>gb|AC136833.3| Rattus norvegicus 1 BAC CH230-184E24 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 186074

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 49     gggaacagagagttctgctttctg 72
              |||||||||| |||||||||||||
Sbjct: 144718 gggaacagagtgttctgctttctg 144695



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>emb|AL442064.10| Human DNA sequence from clone RP11-272D1 on chromosome 9 Contains the 3'
              end of the EDG2 gene for endothelial differentiation,
              lysophosphatidic acid G-protein-coupled receptor, 2,
              complete sequence
          Length = 169905

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 286    accaaaagagaaacaaaagg 305
              ||||||||||||||||||||
Sbjct: 103601 accaaaagagaaacaaaagg 103620



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>emb|AL672177.9| Mouse DNA sequence from clone RP23-292D8 on chromosome 11 Contains the
             3' end of the Gria1 gene for glutamate receptor,
             ionotropic, AMPA1 (alpha 1), complete sequence
          Length = 157692

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    ggaacagagagttctgcttt 69
             ||||||||||||||||||||
Sbjct: 15096 ggaacagagagttctgcttt 15115



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>gb|AC060226.39| Homo sapiens 12 BAC RP11-101P14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 132604

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 140   cctcatttgtatgccttctc 159
             ||||||||||||||||||||
Sbjct: 34568 cctcatttgtatgccttctc 34549



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>gb|AC018799.8| Homo sapiens BAC clone RP11-125N8 from 2, complete sequence
          Length = 151107

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 340    gatgtcgattgaagatctttcccc 363
              |||||||||| |||||||||||||
Sbjct: 106940 gatgtcgatttaagatctttcccc 106917



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>emb|CT027665.2| Medicago truncatula chromosome 5 clone mth2-69e15, COMPLETE SEQUENCE
          Length = 130069

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 284   gaaccaaaagagaaacaaaa 303
             ||||||||||||||||||||
Sbjct: 33834 gaaccaaaagagaaacaaaa 33853



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>gb|AC155928.2| Mus musculus BAC clone RP24-70N20 from 9, complete sequence
          Length = 239304

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 282    tggaaccaaaagagaaacaa 301
              ||||||||||||||||||||
Sbjct: 174786 tggaaccaaaagagaaacaa 174805



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>gb|AC007157.6|AC007157 Homo sapiens, clone hRPK.78_A_1, complete sequence
          Length = 152937

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 286  accaaaagagaaacaaaagg 305
            ||||||||||||||||||||
Sbjct: 2148 accaaaagagaaacaaaagg 2167



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>gb|AC135187.3| Mus musculus BAC clone RP24-263A3 from 5, complete sequence
          Length = 176333

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 286    accaaaagagaaacaaaagg 305
              ||||||||||||||||||||
Sbjct: 136085 accaaaagagaaacaaaagg 136066



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>gb|AC140356.3| Mus musculus BAC clone RP23-216B19 from 6, complete sequence
          Length = 211504

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 59     agttctgctttctggtttgctctt 82
              |||||||||| |||||||||||||
Sbjct: 114546 agttctgcttactggtttgctctt 114523



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>emb|AL606974.9| Mouse DNA sequence from clone RP23-39E21 on chromosome 4, complete
             sequence
          Length = 232587

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   tgccttctcaattaggaaag 170
             ||||||||||||||||||||
Sbjct: 43921 tgccttctcaattaggaaag 43902



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>emb|AL670670.7| Mouse DNA sequence from clone RP23-234O7 on chromosome X, complete
             sequence
          Length = 91811

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    tctgctttctggtttgctct 81
             ||||||||||||||||||||
Sbjct: 69307 tctgctttctggtttgctct 69288


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,917,633
Number of Sequences: 3902068
Number of extensions: 3917633
Number of successful extensions: 81312
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81143
Number of HSP's gapped (non-prelim): 166
length of query: 379
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 357
effective length of database: 17,147,199,772
effective search space: 6121550318604
effective search space used: 6121550318604
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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