| Clone Name | basd24l09 |
|---|---|
| Clone Library Name | barley_pub |
>PELO_DROME (P48612) Protein pelota| Length = 395 Score = 185 bits (469), Expect = 1e-46 Identities = 88/167 (52%), Positives = 124/167 (74%) Frame = +3 Query: 120 MKLVHRNLARNGPGSAKLLPEEEDDLWHAYNLIAVGDSLQAVTVRKVLRDSASGGRDAER 299 MKL+ + + + G+ L+PEE +D+WHAYNLIA GDS+++ T+RKV ++A+G + R Sbjct: 1 MKLLGKYVDKGMQGNVTLVPEESEDMWHAYNLIAKGDSVRSTTIRKVQNETATGSSTSSR 60 Query: 300 VKLKLEIVVESVDYDKEGNVLRVRGKNITENDHVKIGQFHTLELELKRPFVLRKEYWDWL 479 V+ L I VES+D+D + VLR++G+NI EN +VK+G +HTL+LEL R F LRK WD + Sbjct: 61 VRTTLTIAVESIDFDTQACVLRLKGRNIEENQYVKMGAYHTLDLELNRKFELRKPEWDTI 120 Query: 480 ALDTIQQACDPTASADLAVILMQEGLAHLFLIGRSITATRSRIETSI 620 AL+ I+ ACDPT SAD+A ++MQEGLAH+ LI S+T RS+IE SI Sbjct: 121 ALERIEMACDPTQSADVAAVVMQEGLAHVCLITASMTLVRSKIEVSI 167
>PELO_XENLA (Q5U567) Protein pelota homolog| Length = 383 Score = 180 bits (456), Expect = 3e-45 Identities = 84/167 (50%), Positives = 121/167 (72%) Frame = +3 Query: 120 MKLVHRNLARNGPGSAKLLPEEEDDLWHAYNLIAVGDSLQAVTVRKVLRDSASGGRDAER 299 MKL+ +++ ++ G L+PEE +D+WH YNL+ VGDSLQA T+RKV +S++G + R Sbjct: 1 MKLIRKDIEKDNAGQVTLIPEEAEDMWHTYNLLHVGDSLQASTIRKVQTESSTGSVGSNR 60 Query: 300 VKLKLEIVVESVDYDKEGNVLRVRGKNITENDHVKIGQFHTLELELKRPFVLRKEYWDWL 479 V+ L I VE++D+D + LRV+G NI EN +VK+G +HT+ELE R F L K+ WD + Sbjct: 61 VRTTLTICVETIDFDSQACQLRVKGINIQENQYVKMGAYHTIELEPNRKFTLAKKQWDSI 120 Query: 480 ALDTIQQACDPTASADLAVILMQEGLAHLFLIGRSITATRSRIETSI 620 L+ I+QACDP SAD+A ++MQEGLAH+ L+ S+T R++IETSI Sbjct: 121 VLERIEQACDPAFSADVAAVVMQEGLAHICLVTPSMTLLRAKIETSI 167
>PELO_PONPY (Q5RCE3) Protein pelota homolog| Length = 385 Score = 180 bits (456), Expect = 3e-45 Identities = 82/167 (49%), Positives = 122/167 (73%) Frame = +3 Query: 120 MKLVHRNLARNGPGSAKLLPEEEDDLWHAYNLIAVGDSLQAVTVRKVLRDSASGGRDAER 299 MKLV +N+ ++ G L+PEE +D+WH YNL+ VGDSL+A T+RKV +S++G + R Sbjct: 1 MKLVRKNIEKDNAGQVTLVPEEPEDMWHTYNLVQVGDSLRASTIRKVQTESSTGSVGSNR 60 Query: 300 VKLKLEIVVESVDYDKEGNVLRVRGKNITENDHVKIGQFHTLELELKRPFVLRKEYWDWL 479 V+ L + VE++D+D + LRV+G NI EN++VK+G +HT+ELE R F L K+ WD + Sbjct: 61 VRTTLTLCVEAIDFDSQACQLRVKGTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSV 120 Query: 480 ALDTIQQACDPTASADLAVILMQEGLAHLFLIGRSITATRSRIETSI 620 L+ I+QACDP SAD+A ++MQEGLAH+ L+ S+T TR+++E +I Sbjct: 121 VLERIEQACDPAWSADVAAVVMQEGLAHICLVTPSMTLTRAKVEVNI 167
>PELO_HUMAN (Q9BRX2) Protein pelota homolog| Length = 385 Score = 180 bits (456), Expect = 3e-45 Identities = 82/167 (49%), Positives = 122/167 (73%) Frame = +3 Query: 120 MKLVHRNLARNGPGSAKLLPEEEDDLWHAYNLIAVGDSLQAVTVRKVLRDSASGGRDAER 299 MKLV +N+ ++ G L+PEE +D+WH YNL+ VGDSL+A T+RKV +S++G + R Sbjct: 1 MKLVRKNIEKDNAGQVTLVPEEPEDMWHTYNLVQVGDSLRASTIRKVQTESSTGSVGSNR 60 Query: 300 VKLKLEIVVESVDYDKEGNVLRVRGKNITENDHVKIGQFHTLELELKRPFVLRKEYWDWL 479 V+ L + VE++D+D + LRV+G NI EN++VK+G +HT+ELE R F L K+ WD + Sbjct: 61 VRTTLTLCVEAIDFDSQACQLRVKGTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSV 120 Query: 480 ALDTIQQACDPTASADLAVILMQEGLAHLFLIGRSITATRSRIETSI 620 L+ I+QACDP SAD+A ++MQEGLAH+ L+ S+T TR+++E +I Sbjct: 121 VLERIEQACDPAWSADVAAVVMQEGLAHICLVTPSMTLTRAKVEVNI 167
>PELO_BOVIN (Q58DV0) Protein pelota homolog| Length = 386 Score = 178 bits (451), Expect = 1e-44 Identities = 81/167 (48%), Positives = 122/167 (73%) Frame = +3 Query: 120 MKLVHRNLARNGPGSAKLLPEEEDDLWHAYNLIAVGDSLQAVTVRKVLRDSASGGRDAER 299 MKLV +++ ++ G L+PEE +D+WH YNL+ VGDSL+A T+RKV +S++G + R Sbjct: 1 MKLVRKDIEKDNAGQVTLVPEEPEDMWHTYNLVQVGDSLRASTIRKVQTESSTGSVGSNR 60 Query: 300 VKLKLEIVVESVDYDKEGNVLRVRGKNITENDHVKIGQFHTLELELKRPFVLRKEYWDWL 479 V+ L + VE++D+D + LRV+G NI EN++VK+G +HT+ELE R F L K+ WD + Sbjct: 61 VRTTLTLCVEAIDFDSQACQLRVKGTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSV 120 Query: 480 ALDTIQQACDPTASADLAVILMQEGLAHLFLIGRSITATRSRIETSI 620 L+ I+QACDP SAD+A ++MQEGLAH+ L+ S+T TR+++E +I Sbjct: 121 VLERIEQACDPAWSADVAAVVMQEGLAHICLVTPSMTLTRAKVEVNI 167
>PELO_RAT (Q5XIP1) Protein pelota homolog| Length = 385 Score = 177 bits (450), Expect = 2e-44 Identities = 81/167 (48%), Positives = 122/167 (73%) Frame = +3 Query: 120 MKLVHRNLARNGPGSAKLLPEEEDDLWHAYNLIAVGDSLQAVTVRKVLRDSASGGRDAER 299 MKLV +++ ++ G L+PEE +D+WH YNL+ VGDSL+A T+RKV +S++G + R Sbjct: 1 MKLVRKDIEKDNAGQVTLVPEEPEDMWHTYNLVQVGDSLRASTIRKVQTESSTGSVGSNR 60 Query: 300 VKLKLEIVVESVDYDKEGNVLRVRGKNITENDHVKIGQFHTLELELKRPFVLRKEYWDWL 479 V+ L + VE++D+D + LRV+G NI EN++VK+G +HT+ELE R F L K+ WD + Sbjct: 61 VRTTLTLCVEAIDFDSQACQLRVKGTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSV 120 Query: 480 ALDTIQQACDPTASADLAVILMQEGLAHLFLIGRSITATRSRIETSI 620 L+ I+QACDP SAD+A ++MQEGLAH+ L+ S+T TR+++E +I Sbjct: 121 VLERIEQACDPAWSADVAAVVMQEGLAHVCLVTPSMTLTRAKVEVNI 167
>PELO_MOUSE (Q80X73) Protein pelota homolog| Length = 385 Score = 177 bits (450), Expect = 2e-44 Identities = 81/167 (48%), Positives = 122/167 (73%) Frame = +3 Query: 120 MKLVHRNLARNGPGSAKLLPEEEDDLWHAYNLIAVGDSLQAVTVRKVLRDSASGGRDAER 299 MKLV +++ ++ G L+PEE +D+WH YNL+ VGDSL+A T+RKV +S++G + R Sbjct: 1 MKLVRKDIEKDNAGQVTLVPEEPEDMWHTYNLVQVGDSLRASTIRKVQTESSTGSVGSNR 60 Query: 300 VKLKLEIVVESVDYDKEGNVLRVRGKNITENDHVKIGQFHTLELELKRPFVLRKEYWDWL 479 V+ L + VE++D+D + LRV+G NI EN++VK+G +HT+ELE R F L K+ WD + Sbjct: 61 VRTTLTLCVEAIDFDSQACQLRVKGTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSV 120 Query: 480 ALDTIQQACDPTASADLAVILMQEGLAHLFLIGRSITATRSRIETSI 620 L+ I+QACDP SAD+A ++MQEGLAH+ L+ S+T TR+++E +I Sbjct: 121 VLERIEQACDPAWSADVAAVVMQEGLAHVCLVTPSMTLTRAKVEVNI 167
>PELO_BRARE (Q7ZWC4) Protein pelota homolog| Length = 385 Score = 177 bits (450), Expect = 2e-44 Identities = 80/167 (47%), Positives = 121/167 (72%) Frame = +3 Query: 120 MKLVHRNLARNGPGSAKLLPEEEDDLWHAYNLIAVGDSLQAVTVRKVLRDSASGGRDAER 299 MKLVH+++ ++ G L+P+E +D+WH YNL+ VGDSL+A T+RKV +S++G + R Sbjct: 1 MKLVHKDIEKDNAGQVTLIPDEAEDMWHTYNLLQVGDSLRASTIRKVQTESSTGSVGSSR 60 Query: 300 VKLKLEIVVESVDYDKEGNVLRVRGKNITENDHVKIGQFHTLELELKRPFVLRKEYWDWL 479 V+ L + VE++D+D + LRV+G NI EN +VK+G +HT+ELEL R F L K+ WD + Sbjct: 61 VRTTLTLCVETIDFDSQACQLRVKGTNIQENQYVKMGAYHTIELELNRKFTLAKKVWDSV 120 Query: 480 ALDTIQQACDPTASADLAVILMQEGLAHLFLIGRSITATRSRIETSI 620 LD I+QACDP AD+A ++MQEGLA+L L+ ++T R+++E +I Sbjct: 121 VLDRIEQACDPAQKADVAAVVMQEGLANLVLVTPAMTLLRAKVEVTI 167
>PELO_CHICK (Q5ZK01) Protein pelota homolog| Length = 385 Score = 177 bits (448), Expect = 3e-44 Identities = 80/167 (47%), Positives = 122/167 (73%) Frame = +3 Query: 120 MKLVHRNLARNGPGSAKLLPEEEDDLWHAYNLIAVGDSLQAVTVRKVLRDSASGGRDAER 299 MKLV ++L ++ G L+PEE +D+WH YNL+ VGDSL+A T+RKV +S++G + R Sbjct: 1 MKLVRKDLEKDNAGQVTLIPEEPEDMWHTYNLLQVGDSLRASTIRKVQTESSTGSVGSNR 60 Query: 300 VKLKLEIVVESVDYDKEGNVLRVRGKNITENDHVKIGQFHTLELELKRPFVLRKEYWDWL 479 ++ L + VE++D+D + LRV+G NI EN++VK+G +HT+ELE R F L K+ WD + Sbjct: 61 IRTTLTLCVEAIDFDSQACQLRVKGTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSV 120 Query: 480 ALDTIQQACDPTASADLAVILMQEGLAHLFLIGRSITATRSRIETSI 620 L+ I+QACDP +AD+A ++MQEGLAH+ L+ S+T TR+++E +I Sbjct: 121 VLERIEQACDPAWNADVAAVVMQEGLAHVCLVTPSMTLTRAKVEVNI 167
>YNU6_CAEEL (P50444) Hypothetical protein R74.6 in chromosome III| Length = 381 Score = 150 bits (379), Expect = 3e-36 Identities = 70/167 (41%), Positives = 113/167 (67%) Frame = +3 Query: 120 MKLVHRNLARNGPGSAKLLPEEEDDLWHAYNLIAVGDSLQAVTVRKVLRDSASGGRDAER 299 MK R + R+G G L+ EE +D+WH YNLI +GD ++A T+RKV+ ++++G ++R Sbjct: 1 MKQFKRGIERDGTGFVVLMAEEAEDMWHIYNLIRIGDIIKASTIRKVVSETSTGTTSSQR 60 Query: 300 VKLKLEIVVESVDYDKEGNVLRVRGKNITENDHVKIGQFHTLELELKRPFVLRKEYWDWL 479 V L + VES+D+D L ++G+NI END VK+G +HT++LE R F L+K WD + Sbjct: 61 VHTMLTVSVESIDFDPGAQELHLKGRNIEENDIVKLGAYHTIDLEPNRKFTLQKTEWDSI 120 Query: 480 ALDTIQQACDPTASADLAVILMQEGLAHLFLIGRSITATRSRIETSI 620 L+ + A DP +AD+A +++ EGLA++ LI ++T TR++I+ +I Sbjct: 121 DLERLNLALDPAQAADVAAVVLHEGLANVCLITPAMTLTRAKIDMTI 167
>Y174_METJA (Q57638) Hypothetical protein MJ0174| Length = 347 Score = 70.9 bits (172), Expect = 3e-12 Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 2/136 (1%) Frame = +3 Query: 168 KLLPEEEDDLWHAYNLIAVGDSLQAVTVRKV--LRDSASGGRDAERVKLKLEIVVESVDY 341 KL+PE DDLW YN+I GD + AVT R+V D R A+R K+ L I V++V++ Sbjct: 14 KLMPENLDDLWVLYNIIEEGDKIFAVTERRVQDKGDVIRADRGAKR-KMFLGIEVKNVEF 72 Query: 342 DKEGNVLRVRGKNITENDHVKIGQFHTLELELKRPFVLRKEYWDWLALDTIQQACDPTAS 521 D+ +R+ G I D V +G HT+E++ + K + W ++ I++A + + Sbjct: 73 DENTKRVRILGTIIHGPDDVPLGSHHTIEIKPFDELSIEKNWKKW-QIERIKEAIESSKR 131 Query: 522 ADLAVILMQEGLAHLF 569 + V++M + A +F Sbjct: 132 PKVLVVVMDDEEADIF 147
>DOM34_YEAST (P33309) Protein DOM34| Length = 311 Score = 48.1 bits (113), Expect = 2e-05 Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 5/92 (5%) Frame = +3 Query: 360 LRVRGKNITE-----NDHVKIGQFHTLELELKRPFVLRKEYWDWLALDTIQQACDPTASA 524 L+ +G +T+ N + +G++ + L+ PF + K+ ++ + +AC+ + Sbjct: 6 LKYKGVTVTDESGASNVDIPVGKYLSFTLDYVYPFTIIKQNFNKFMQKLLNEACNIEYKS 65 Query: 525 DLAVILMQEGLAHLFLIGRSITATRSRIETSI 620 D A +++QEG+AH+ L+ S T + +IE S+ Sbjct: 66 DTAAVVLQEGIAHVCLVTSSSTILKQKIEYSM 97
>ASNH1_METJA (Q58516) Putative asparagine synthetase [glutamine-hydrolyzing] 1| (EC 6.3.5.4) Length = 541 Score = 30.8 bits (68), Expect = 3.4 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 10/93 (10%) Frame = +3 Query: 120 MKLVHRNLARNGPGSAKLLPEEEDDLWHAYNLIAVGDSLQAVTVRKVLRDSASGGRDAER 299 + L H LA G + +P E++ +W L+ G+ + +R+ L+ + D++ Sbjct: 62 LSLAHNRLAIVGRYGVQPIPNEDETIW----LVCNGEIYNYIELREYLKQNHEFRTDSDN 117 Query: 300 ---VKLKLEIVVESVD-------YDKEGNVLRV 368 + L E +E +D YDK NV+R+ Sbjct: 118 EVIIHLYEEEKLEELDGDYAFAIYDKSKNVVRL 150
>ILVC_RALSO (Q8XXN8) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 338 Score = 30.8 bits (68), Expect = 3.4 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%) Frame = +3 Query: 333 VDYDKEGNVLRVRGKNITENDHVKIGQFHTLELE---LKRPFVLRKEYWDW-LALDT--- 491 V YDK+ ++ ++GKN+T + G H L L +K LRK W A++ Sbjct: 3 VFYDKDADLSLIKGKNVTIIGYGSQGHAHALNLNDSGVKVTVGLRKNGASWNKAVNAGLQ 62 Query: 492 IQQACDPTASADLAVILMQE 551 +++ + AD+ +IL+ + Sbjct: 63 VKEVAEAVKDADVVMILLPD 82
>GAG_MMTVC (P11284) Gag polyprotein [Contains: Protein p10; Phosphorylated| protein pp21; Protein p3; Protein p8; Protein n; Major core protein p27; Nucleic acid-binding protein p14] Length = 590 Score = 30.0 bits (66), Expect = 5.7 Identities = 12/44 (27%), Positives = 24/44 (54%) Frame = -2 Query: 574 IRNKWASPSCIRITARSALAVGSHACWMVSSANQSQYSFRRTKG 443 + ++W +PS TAR+ L+ G + W +S+ + ++T G Sbjct: 316 VASQWLTPSDWHQTARATLSPGDYVLWRTEYEEKSKETVQKTAG 359
>HIS7_ASHGO (Q75B47) Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)| (IGPD) Length = 220 Score = 29.6 bits (65), Expect = 7.5 Identities = 16/35 (45%), Positives = 20/35 (57%) Frame = -3 Query: 456 VEQKVSSAQVLKYETGQSSRDHSQ*YFCHALAKHS 352 V + SS+QV+ +TG DH HALAKHS Sbjct: 43 VAHQASSSQVINVQTGVGFLDH----MIHALAKHS 73
>RPOC_PEDAC (P77917) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) (Fragment) Length = 1055 Score = 29.6 bits (65), Expect = 7.5 Identities = 18/81 (22%), Positives = 37/81 (45%) Frame = +3 Query: 312 LEIVVESVDYDKEGNVLRVRGKNITENDHVKIGQFHTLELELKRPFVLRKEYWDWLALDT 491 ++ +++SVD +KE N+L+ K + + L++ F+ + DW+ +D Sbjct: 175 IQALLQSVDLEKEANLLKEELKEASGQKRTRA----VRRLDIIEAFIKSGNHPDWMVMDA 230 Query: 492 IQQACDPTASADLAVILMQEG 554 I P DL ++ +G Sbjct: 231 I-----PVMPPDLRPMVQLDG 246
>ILVC_AZOSE (Q5NXP4) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 338 Score = 29.6 bits (65), Expect = 7.5 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 7/80 (8%) Frame = +3 Query: 333 VDYDKEGNVLRVRGKNITENDHVKIGQFHTLELE---LKRPFVLRKEYWDWLALDT---- 491 V YDK+ ++ ++GK IT + G H L+ K LRK W + Sbjct: 3 VYYDKDADLSLIKGKQITIVGYGSQGHAHAQNLKDSGCKVTVGLRKSGASWKKAEAAGLD 62 Query: 492 IQQACDPTASADLAVILMQE 551 +++ + ++AD+ +IL+ + Sbjct: 63 VREVAEAVSNADIVMILLPD 82
>M860_ARATH (P92523) Hypothetical mitochondrial protein AtMg00860 (ORF158)| Length = 158 Score = 29.3 bits (64), Expect = 9.8 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = +3 Query: 432 ELKRPFVLRKEYWDWLALDTIQQAC 506 +LK PFV R W+W T +QAC Sbjct: 126 DLKLPFVTRVGKWNWSCFITREQAC 150
>ILVC_RALEJ (Q473V5) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 338 Score = 29.3 bits (64), Expect = 9.8 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 7/80 (8%) Frame = +3 Query: 333 VDYDKEGNVLRVRGKNITENDHVKIGQFHTLELE---LKRPFVLRKEYWDW-LALDT--- 491 V YDK+ ++ ++GKN+T + G H L L+ + LRK W A++ Sbjct: 3 VFYDKDADLSLIKGKNVTIIGYGSQGHAHALNLKDSGVNVTVGLRKSGASWNKAVNAGLQ 62 Query: 492 IQQACDPTASADLAVILMQE 551 +++ + AD+ +IL+ + Sbjct: 63 VKEVAEAVKGADVVMILLPD 82
>ILVC_BURS3 (Q39ED2) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 338 Score = 29.3 bits (64), Expect = 9.8 Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 7/81 (8%) Frame = +3 Query: 330 SVDYDKEGNVLRVRGKNITENDHVKIGQFHTLELE---LKRPFVLRKEYWDWLALD---- 488 +V YDK+ ++ ++GK +T + G H L L+ + LRK W + Sbjct: 2 NVFYDKDADLSLIKGKQVTIIGYGSQGHAHALNLKDSGVNVTVGLRKGGASWSKAENAGL 61 Query: 489 TIQQACDPTASADLAVILMQE 551 ++++ + SAD+ ++L+ + Sbjct: 62 SVKEVAEAVKSADVVMMLLPD 82 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,245,497 Number of Sequences: 219361 Number of extensions: 1233618 Number of successful extensions: 3553 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3479 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3553 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)