| Clone Name | basd24l07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK103268.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124H02, full insert sequence Length = 2391 Score = 672 bits (339), Expect = 0.0 Identities = 544/606 (89%), Gaps = 5/606 (0%) Strand = Plus / Plus Query: 1 caaataaagnatcttttggnacaccttaatttctgggtacgaggatacggaggttgcttt 60 ||||||||| ||||||||| ||||||||||||||||||| ||| ||| ||| ||||||| Sbjct: 1509 caaataaag-atcttttgg-acaccttaatttctgggtatgagaatatggacattgcttt 1566 Query: 61 acattatggtgcaatgttgagggaatgtattcgccatcagnagtattgcaaggtatgttc 120 ||||| || | ||| ||||||||||||||||||| || |||||||||||||| ||| Sbjct: 1567 gcattacggctctatgctgagggaatgtattcgccacca-aagtattgcaaggtacgttt 1625 Query: 121 tagagtctgatcacatgnaagaagttctttgactatatacaaattccaaattttgacata 180 |||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||| Sbjct: 1626 tagagtctgaccacatg-aagaagttctttgactatatacaacttccaaattttgacatt 1684 Query: 181 gcatcagatgcttctgcaaccttcaaggnaacttctgacaaggcataaagcaactgtggc 240 ||||||||||||||||| ||||| |||| |||||||||||||||||||||| || ||||| Sbjct: 1685 gcatcagatgcttctgcgacctttaagg-aacttctgacaaggcataaagctaccgtggc 1743 Query: 241 ggaatttctttcaaagaactatgactggttctttgcagaattcaactctaggctgctatc 300 |||||||| |||||||| ||||||||||||||| ||||||||||| ||||| ||||||| Sbjct: 1744 agaatttctgtcaaagaattatgactggttcttttcagaattcaacactaggttgctatc 1803 Query: 301 atcaagcaactatataacaaagaggcaggctatcaagctgttgggagacatgctgcttga 360 ||||| |||||| |||||||| ||||||||||||||| | |||||||||||||||||||| Sbjct: 1804 atcaaccaactacataacaaaaaggcaggctatcaagttcttgggagacatgctgcttga 1863 Query: 361 tagatcaaattctgcagtcatgatgcgatatgttggttcaaaagataatcttatgattct 420 |||||| || ||| ||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct: 1864 tagatccaactctacagtcatgatgcgttatgttagttcaaaagataatcttatgattct 1923 Query: 421 gatgaatcttttgagggactcaagcaaaaatattcagatagaatcttttcatgtgttcaa 480 |||||||| ||||| || ||||||||||||||||| || ||| | |||||||||||||| Sbjct: 1924 catgaatctcttgagagattcaagcaaaaatattcaaattgaagcatttcatgtgttcaa 1983 Query: 481 gctattcgctgcaaataaaaacaaaccagctgaggttgtgaacatactagtcacaaatcg 540 | |||| || |||||||||||||| ||| |||||||||| ||||||||||||||||| || Sbjct: 1984 gttatttgcggcaaataaaaacaagccaactgaggttgtaaacatactagtcacaaaccg 2043 Query: 541 aagcaagcttcttcgattttttgccggattcaaaactgacaaagaggatgagcagtttga 600 |||||||||||| |||||||||||||||||||| | ||||||||||||||||||||| || Sbjct: 2044 aagcaagcttctccgattttttgccggattcaagattgacaaagaggatgagcagttcga 2103 Query: 601 ggcaga 606 |||||| Sbjct: 2104 ggcaga 2109
>gb|AY106281.1| Zea mays PCO117884 mRNA sequence Length = 1557 Score = 488 bits (246), Expect = e-134 Identities = 479/553 (86%), Gaps = 3/553 (0%) Strand = Plus / Plus Query: 54 ttgctttacattatggtgcaatgttgagggaatgtattcgccatcagnagtattgcaagg 113 ||||||||||||||||||| ||||||||||||||||||||||| || || ||||||||| Sbjct: 839 ttgctttacattatggtgctatgttgagggaatgtattcgccacca-aagcattgcaagg 897 Query: 114 tatgttctagagtctgatcacatgnaagaagttctttgactatatacaaattccaaattt 173 |||||| ||||||| || || ||| ||||||||||| ||||||||||| |||||||||| Sbjct: 898 tatgttttagagtccgaacatatg-aagaagttcttcgactatatacagcttccaaattt 956 Query: 174 tgacatagcatcagatgcttctgcaaccttcaaggnaacttctgacaaggcataaagcaa 233 ||||||||| || ||||||||||| ||||| |||| |||| ||||||| |||||||||| Sbjct: 957 tgacatagcttctgatgcttctgctacctttaagg-aactattgacaagacataaagcaa 1015 Query: 234 ctgtggcggaatttctttcaaagaactatgactggttctttgcagaattcaactctaggc 293 | || || |||||||| || || || ||||| ||||| |||| |||||||||||||||| Sbjct: 1016 ccgttgctgaatttctctccaacaattatgattggttttttgaagaattcaactctaggt 1075 Query: 294 tgctatcatcaagcaactatataacaaagaggcaggctatcaagctgttgggagacatgc 353 |||| ||||||| ||||||||||||||| ||||| ||||||||| |||||||||| |||| Sbjct: 1076 tgctgtcatcaaccaactatataacaaaaaggcaagctatcaagttgttgggagatatgc 1135 Query: 354 tgcttgatagatcaaattctgcagtcatgatgcgatatgttggttcaaaagataatctta 413 |||| |||||||||||| |||||| |||||||| |||||| |||| ||||| ||||||| Sbjct: 1136 tgctggatagatcaaatgttgcagtgatgatgcgctatgttagttccaaagacaatctta 1195 Query: 414 tgattctgatgaatcttttgagggactcaagcaaaaatattcagatagaatcttttcatg 473 |||||||||||||||| || ||||| || || |||||||| || || || | ||||| | Sbjct: 1196 tgattctgatgaatctcttaagggattcgagtaaaaatatccaaatcgaggcatttcacg 1255 Query: 474 tgttcaagctattcgctgcaaataaaaacaaaccagctgaggttgtgaacatactagtca 533 |||||||||| || ||||| ||||||||||||||| ||||||| ||||||||||| |||| Sbjct: 1256 tgttcaagctgtttgctgcgaataaaaacaaaccacctgaggtcgtgaacatactggtca 1315 Query: 534 caaatcgaagcaagcttcttcgattttttgccggattcaaaactgacaaagaggatgagc 593 | ||| ||| |||||| ||||| |||||||| |||||||| | ||||||||||||||| | Sbjct: 1316 ccaatagaaacaagctacttcgtttttttgctggattcaagattgacaaagaggatgaac 1375 Query: 594 agtttgaggcaga 606 ||||||| ||||| Sbjct: 1376 agtttgaagcaga 1388
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 341 ttgggagacatgctgcttgatagatcaaattctgcagtcatgatgcgatatgttggttca 400 |||||||||||||||||||||||||| || ||| ||||||||||||| |||||| ||||| Sbjct: 23705460 ttgggagacatgctgcttgatagatccaactctacagtcatgatgcgttatgttagttca 23705519 Query: 401 aaagataatcttatgattctgatgaatcttttgag 435 |||||||||||||||||||| |||||||| ||||| Sbjct: 23705520 aaagataatcttatgattctcatgaatctcttgag 23705554 Score = 131 bits (66), Expect = 3e-27 Identities = 87/94 (92%) Strand = Plus / Plus Query: 491 gcaaataaaaacaaaccagctgaggttgtgaacatactagtcacaaatcgaagcaagctt 550 |||||||||||||| ||| |||||||||| ||||||||||||||||| |||||||||||| Sbjct: 23706348 gcaaataaaaacaagccaactgaggttgtaaacatactagtcacaaaccgaagcaagctt 23706407 Query: 551 cttcgattttttgccggattcaaaactgacaaag 584 || |||||||||||||||||||| | |||||||| Sbjct: 23706408 ctccgattttttgccggattcaagattgacaaag 23706441 Score = 123 bits (62), Expect = 7e-25 Identities = 90/98 (91%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 111 aggtatgttctagagtctgatcacatgnaagaagttctttgactatatacaaattccaaa 170 ||||| ||| |||||||||| |||||| |||||||||||||||||||||||| ||||||| Sbjct: 23704385 aggtacgttttagagtctgaccacatg-aagaagttctttgactatatacaacttccaaa 23704443 Query: 171 ttttgacatagcatcagatgcttctgcaaccttcaagg 208 ||||||||| ||||||||||||||||| ||||| |||| Sbjct: 23704444 ttttgacattgcatcagatgcttctgcgacctttaagg 23704481 Score = 91.7 bits (46), Expect = 3e-15 Identities = 64/70 (91%) Strand = Plus / Plus Query: 268 gttctttgcagaattcaactctaggctgctatcatcaagcaactatataacaaagaggca 327 ||||||| ||||||||||| ||||| |||||||||||| |||||| |||||||| ||||| Sbjct: 23705082 gttcttttcagaattcaacactaggttgctatcatcaaccaactacataacaaaaaggca 23705141 Query: 328 ggctatcaag 337 |||||||||| Sbjct: 23705142 ggctatcaag 23705151 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 210 aacttctgacaaggcataaagcaactgtggcggaatttctttcaaagaactatgactgg 268 |||||||||||||||||||||| || ||||| |||||||| |||||||| ||||||||| Sbjct: 23704857 aacttctgacaaggcataaagctaccgtggcagaatttctgtcaaagaattatgactgg 23704915 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 440 tcaagcaaaaatattcagatagaatcttttcatgtgttcaag 481 ||||||||||||||||| || ||| | ||||||||||||||| Sbjct: 23706204 tcaagcaaaaatattcaaattgaagcatttcatgtgttcaag 23706245 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/37 (91%), Gaps = 1/37 (2%) Strand = Plus / Plus Query: 78 tgagggaatgtattcgccatcagnagtattgcaaggt 114 ||||||||||||||||||| || ||||||||||||| Sbjct: 23703169 tgagggaatgtattcgccacca-aagtattgcaaggt 23703204 Score = 44.1 bits (22), Expect = 0.53 Identities = 36/38 (94%), Gaps = 2/38 (5%) Strand = Plus / Plus Query: 1 caaataaagnatcttttggnacaccttaatttctgggt 38 ||||||||| ||||||||| |||||||||||||||||| Sbjct: 23702068 caaataaag-atcttttgg-acaccttaatttctgggt 23702103
>dbj|AP003803.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1060_D03 Length = 102178 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 341 ttgggagacatgctgcttgatagatcaaattctgcagtcatgatgcgatatgttggttca 400 |||||||||||||||||||||||||| || ||| ||||||||||||| |||||| ||||| Sbjct: 50074 ttgggagacatgctgcttgatagatccaactctacagtcatgatgcgttatgttagttca 50133 Query: 401 aaagataatcttatgattctgatgaatcttttgag 435 |||||||||||||||||||| |||||||| ||||| Sbjct: 50134 aaagataatcttatgattctcatgaatctcttgag 50168 Score = 131 bits (66), Expect = 3e-27 Identities = 87/94 (92%) Strand = Plus / Plus Query: 491 gcaaataaaaacaaaccagctgaggttgtgaacatactagtcacaaatcgaagcaagctt 550 |||||||||||||| ||| |||||||||| ||||||||||||||||| |||||||||||| Sbjct: 50962 gcaaataaaaacaagccaactgaggttgtaaacatactagtcacaaaccgaagcaagctt 51021 Query: 551 cttcgattttttgccggattcaaaactgacaaag 584 || |||||||||||||||||||| | |||||||| Sbjct: 51022 ctccgattttttgccggattcaagattgacaaag 51055 Score = 123 bits (62), Expect = 7e-25 Identities = 90/98 (91%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 111 aggtatgttctagagtctgatcacatgnaagaagttctttgactatatacaaattccaaa 170 ||||| ||| |||||||||| |||||| |||||||||||||||||||||||| ||||||| Sbjct: 48999 aggtacgttttagagtctgaccacatg-aagaagttctttgactatatacaacttccaaa 49057 Query: 171 ttttgacatagcatcagatgcttctgcaaccttcaagg 208 ||||||||| ||||||||||||||||| ||||| |||| Sbjct: 49058 ttttgacattgcatcagatgcttctgcgacctttaagg 49095 Score = 91.7 bits (46), Expect = 3e-15 Identities = 64/70 (91%) Strand = Plus / Plus Query: 268 gttctttgcagaattcaactctaggctgctatcatcaagcaactatataacaaagaggca 327 ||||||| ||||||||||| ||||| |||||||||||| |||||| |||||||| ||||| Sbjct: 49696 gttcttttcagaattcaacactaggttgctatcatcaaccaactacataacaaaaaggca 49755 Query: 328 ggctatcaag 337 |||||||||| Sbjct: 49756 ggctatcaag 49765 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 210 aacttctgacaaggcataaagcaactgtggcggaatttctttcaaagaactatgactgg 268 |||||||||||||||||||||| || ||||| |||||||| |||||||| ||||||||| Sbjct: 49471 aacttctgacaaggcataaagctaccgtggcagaatttctgtcaaagaattatgactgg 49529 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 440 tcaagcaaaaatattcagatagaatcttttcatgtgttcaag 481 ||||||||||||||||| || ||| | ||||||||||||||| Sbjct: 50818 tcaagcaaaaatattcaaattgaagcatttcatgtgttcaag 50859 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/37 (91%), Gaps = 1/37 (2%) Strand = Plus / Plus Query: 78 tgagggaatgtattcgccatcagnagtattgcaaggt 114 ||||||||||||||||||| || ||||||||||||| Sbjct: 47783 tgagggaatgtattcgccacca-aagtattgcaaggt 47818 Score = 44.1 bits (22), Expect = 0.53 Identities = 36/38 (94%), Gaps = 2/38 (5%) Strand = Plus / Plus Query: 1 caaataaagnatcttttggnacaccttaatttctgggt 38 ||||||||| ||||||||| |||||||||||||||||| Sbjct: 46682 caaataaag-atcttttgg-acaccttaatttctgggt 46717
>gb|BT013201.1| Lycopersicon esculentum clone 134365R, mRNA sequence Length = 1626 Score = 109 bits (55), Expect = 1e-20 Identities = 178/215 (82%), Gaps = 3/215 (1%) Strand = Plus / Plus Query: 56 gctttacattatggtgcaatgttgagggaatgtattcgccatcagnagtattgcaaggta 115 ||||| ||||||||||||||||||||||| || |||||||| ||| ||| |||||||||| Sbjct: 820 gctttgcattatggtgcaatgttgagggagtgcattcgccaccag-agtgttgcaaggta 878 Query: 116 tgttctagagtctgatcacatgnaagaagttctttgactatatacaaattccaaattttg 175 ||| | |||||||| || ||| |||||||| || || ||||| || | |||||||||| Sbjct: 879 tgtcttggagtctgagcatatg-aagaagtttttcgattatattcagctgccaaattttg 937 Query: 176 acatagcatcagatgcttctgcaaccttcaaggnaacttctgacaaggcataaagcaact 235 | || || | |||||| | || ||||| |||| |||| |||||||||| ||| |||| Sbjct: 938 atattgctgctgatgctgccgccacctttaagg-aactcttgacaaggcacaaatcaaca 996 Query: 236 gtggcggaatttctttcaaagaactatgactggtt 270 || || ||||||||||| ||||||||||||||||| Sbjct: 997 gtagctgaatttctttcgaagaactatgactggtt 1031 Score = 85.7 bits (43), Expect = 2e-13 Identities = 190/239 (79%) Strand = Plus / Plus Query: 365 tcaaattctgcagtcatgatgcgatatgttggttcaaaagataatcttatgattctgatg 424 ||||||||||| || |||| || |||||| |||||| ||| || | | |||||| ||| Sbjct: 1126 tcaaattctgctgtaatgacacgttatgttagttcaagagacaacttgaggattctcatg 1185 Query: 425 aatcttttgagggactcaagcaaaaatattcagatagaatcttttcatgtgttcaagcta 484 ||||| | ||||| |||||||| | ||| ||||||||| | |||||||| ||||||||| Sbjct: 1186 aatctgctcagggagtcaagcaagagtatccagatagaagcatttcatgtcttcaagcta 1245 Query: 485 ttcgctgcaaataaaaacaaaccagctgaggttgtgaacatactagtcacaaatcgaagc 544 || || |||||| | |||||||| | || |||| | ||| || || |||| ||||| Sbjct: 1246 tttgcggcaaatcacaacaaacctcccgatattgttagcatccttgtagcaaacagaagc 1305 Query: 545 aagcttcttcgattttttgccggattcaaaactgacaaagaggatgagcagtttgaggc 603 || |||||||| | ||||||| || || ||||| ||||||||||||||||||||||| Sbjct: 1306 aaacttcttcgcctctttgccgattttaagactgaaaaagaggatgagcagtttgaggc 1364
>gb|AC154901.1| Prunus persica (peach) BAC clone 82I18, complete sequence Length = 73299 Score = 69.9 bits (35), Expect = 9e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 210 aacttctgacaaggcataaagcaactgtggcggaatttctttcaaagaactatgactgg 268 |||| ||||| ||||||||| | ||||| |||||||||||||| ||||||||||||||| Sbjct: 36289 aactcctgacgaggcataaatctactgtagcggaatttctttccaagaactatgactgg 36347 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 139 aagaagttctttgactatatacaaattccaaattttgacatagcatcagatgcttctgca 198 |||||||||||||| |||||||| |||| |||||||| || || |||||||| ||||| Sbjct: 35782 aagaagttctttgattatatacagcttcccaattttgatattgctgcagatgctgctgca 35841 Query: 199 ac 200 || Sbjct: 35842 ac 35843 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 60 tacattatggtgcaatgttgaggga 84 ||||||||||||||||| ||||||| Sbjct: 35508 tacattatggtgcaatgctgaggga 35532
>ref|NM_117833.2| Arabidopsis thaliana unknown protein AT4G17270 mRNA, complete cds Length = 1883 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 415 gattctgatgaatcttttgagggactcaagcaaaaatattcagatagaatcttttcatgt 474 |||||||||||||||| | || || |||||||| | ||||||||||||| |||| ||||| Sbjct: 1065 gattctgatgaatcttctcagagaatcaagcaagactattcagatagaagctttccatgt 1124 Query: 475 gttcaagct 483 |||||||| Sbjct: 1125 tttcaagct 1133 Score = 46.1 bits (23), Expect = 0.13 Identities = 72/87 (82%), Gaps = 1/87 (1%) Strand = Plus / Plus Query: 139 aagaagttctttgactatatacaaattccaaattttgacatagcatcagatgcttctgca 198 |||||||| ||| |||| ||||| |||| ||||| ||||| || | |||||| ||||| Sbjct: 790 aagaagtttttttactacatacagcttcccaatttcgacattgctgctgatgctgctgca 849 Query: 199 accttcaaggnaacttctgacaaggca 225 || || |||| |||||||||||||||| Sbjct: 850 acttttaagg-aacttctgacaaggca 875
>gb|AY055792.1| Arabidopsis thaliana AT4g17270/dl4670w mRNA, complete cds Length = 1032 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 415 gattctgatgaatcttttgagggactcaagcaaaaatattcagatagaatcttttcatgt 474 |||||||||||||||| | || || |||||||| | ||||||||||||| |||| ||||| Sbjct: 786 gattctgatgaatcttctcagagaatcaagcaagactattcagatagaagctttccatgt 845 Query: 475 gttcaagct 483 |||||||| Sbjct: 846 tttcaagct 854 Score = 46.1 bits (23), Expect = 0.13 Identities = 72/87 (82%), Gaps = 1/87 (1%) Strand = Plus / Plus Query: 139 aagaagttctttgactatatacaaattccaaattttgacatagcatcagatgcttctgca 198 |||||||| ||| |||| ||||| |||| ||||| ||||| || | |||||| ||||| Sbjct: 511 aagaagtttttttactacatacagcttcccaatttcgacattgctgctgatgctgctgca 570 Query: 199 accttcaaggnaacttctgacaaggca 225 || || |||| |||||||||||||||| Sbjct: 571 acttttaagg-aacttctgacaaggca 596
>gb|AF380659.1|AF380659 Arabidopsis thaliana AT4g17270/dl4670w mRNA, complete cds Length = 1519 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 415 gattctgatgaatcttttgagggactcaagcaaaaatattcagatagaatcttttcatgt 474 |||||||||||||||| | || || |||||||| | ||||||||||||| |||| ||||| Sbjct: 1064 gattctgatgaatcttctcagagaatcaagcaagactattcagatagaagctttccatgt 1123 Query: 475 gttcaagct 483 |||||||| Sbjct: 1124 tttcaagct 1132 Score = 46.1 bits (23), Expect = 0.13 Identities = 72/87 (82%), Gaps = 1/87 (1%) Strand = Plus / Plus Query: 139 aagaagttctttgactatatacaaattccaaattttgacatagcatcagatgcttctgca 198 |||||||| ||| |||| ||||| |||| ||||| ||||| || | |||||| ||||| Sbjct: 789 aagaagtttttttactacatacagcttcccaatttcgacattgctgctgatgctgctgca 848 Query: 199 accttcaaggnaacttctgacaaggca 225 || || |||| |||||||||||||||| Sbjct: 849 acttttaagg-aacttctgacaaggca 874
>emb|BX827267.1|CNS0A498 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS2ZH12 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1464 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 415 gattctgatgaatcttttgagggactcaagcaaaaatattcagatagaatcttttcatgt 474 |||||||||||||||| | || || |||||||| | ||||||||||||| |||| ||||| Sbjct: 1035 gattctgatgaatcttctcagagaatcaagcaagactattcagatagaagctttccatgt 1094 Query: 475 gttcaagct 483 |||||||| Sbjct: 1095 tttcaagct 1103 Score = 46.1 bits (23), Expect = 0.13 Identities = 72/87 (82%), Gaps = 1/87 (1%) Strand = Plus / Plus Query: 139 aagaagttctttgactatatacaaattccaaattttgacatagcatcagatgcttctgca 198 |||||||| ||| |||| ||||| |||| ||||| ||||| || | |||||| ||||| Sbjct: 760 aagaagtttttttactacatacagcttcccaatttcgacattgctgctgatgctgctgca 819 Query: 199 accttcaaggnaacttctgacaaggca 225 || || |||| |||||||||||||||| Sbjct: 820 acttttaagg-aacttctgacaaggca 845
>emb|BX827401.1|CNS0A2TI Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS50ZD04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1381 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 415 gattctgatgaatcttttgagggactcaagcaaaaatattcagatagaatcttttcatgt 474 |||||||||||||||| | || || |||||||| | ||||||||||||| |||| ||||| Sbjct: 1032 gattctgatgaatcttctcagagaatcaagcaagactattcagatagaagctttccatgt 1091 Query: 475 gttcaagct 483 |||||||| Sbjct: 1092 tttcaagct 1100
>gb|AC148482.10| Medicago truncatula clone mth2-36j11, complete sequence Length = 115873 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 139 aagaagttctttgactatatacaaattccaaattttgacatagcatcagatgct 192 |||||||||||||| ||||| ||| |||||||||| ||||| || |||||||| Sbjct: 37506 aagaagttctttgattatattcaacttccaaatttcgacattgctgcagatgct 37559
>emb|AJ567229.1|GHI567229 Gossypium hirsutum microsatellite DNA mGhCIR285, clone CIR285 Length = 204 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 216 tgacaaggcataaagcaactgtggcggaatttctttc 252 |||||||||||||| | |||||||| ||||||||||| Sbjct: 37 tgacaaggcataaatccactgtggctgaatttctttc 73
>gb|AC183493.1| Brassica oleracea Contig B, complete sequence Length = 284024 Score = 50.1 bits (25), Expect = 0.009 Identities = 40/45 (88%) Strand = Plus / Plus Query: 56 gctttacattatggtgcaatgttgagggaatgtattcgccatcag 100 ||||||||||||||||| ||||| ||||| || || ||||||||| Sbjct: 34061 gctttacattatggtgctatgtttagggagtgcatccgccatcag 34105
>dbj|AP006147.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT36E18, TM0288, complete sequence Length = 112234 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 56 gctttacattatggtgcaatgttgaggga 84 |||||||| |||||||||||||||||||| Sbjct: 13850 gctttacactatggtgcaatgttgaggga 13822
>gb|AC155343.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone KBrH077A05, complete sequence Length = 113253 Score = 50.1 bits (25), Expect = 0.009 Identities = 40/45 (88%) Strand = Plus / Plus Query: 56 gctttacattatggtgcaatgttgagggaatgtattcgccatcag 100 ||||||||||||||||| ||||| ||||| || || ||||||||| Sbjct: 71745 gctttacattatggtgctatgtttagggagtgcatccgccatcag 71789
>ref|NM_124127.1| Arabidopsis thaliana unknown protein AT5G47540 mRNA, complete cds Length = 1035 Score = 44.1 bits (22), Expect = 0.53 Identities = 74/90 (82%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 139 aagaagttctttgactatatacaaattccaaattttgacatagcatcagatgcttctgca 198 ||||| |||||||| || ||||| |||||||||| ||||| || | |||||| |||| Sbjct: 514 aagaaattctttgattacatacagcttccaaatttcgacattgctgccgatgctgctgct 573 Query: 199 accttcaaggnaacttctgacaaggcataa 228 || || |||| |||| |||||||||||||| Sbjct: 574 acttttaagg-aactgctgacaaggcataa 602
>emb|Z97343.1|ATFCA8 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 8 Length = 207674 Score = 44.1 bits (22), Expect = 0.53 Identities = 37/42 (88%) Strand = Plus / Plus Query: 440 tcaagcaaaaatattcagatagaatcttttcatgtgttcaag 481 |||||||| | ||||||||||||| |||| ||||| |||||| Sbjct: 42837 tcaagcaagactattcagatagaagctttccatgttttcaag 42878
>emb|AL161546.2|ATCHRIV46 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 46 Length = 198788 Score = 44.1 bits (22), Expect = 0.53 Identities = 37/42 (88%) Strand = Plus / Plus Query: 440 tcaagcaaaaatattcagatagaatcttttcatgtgttcaag 481 |||||||| | ||||||||||||| |||| ||||| |||||| Sbjct: 32202 tcaagcaagactattcagatagaagctttccatgttttcaag 32243
>gb|AF428296.1|AF428296 Arabidopsis thaliana AT5g47540/MNJ7_13 mRNA, complete cds Length = 1570 Score = 44.1 bits (22), Expect = 0.53 Identities = 74/90 (82%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 139 aagaagttctttgactatatacaaattccaaattttgacatagcatcagatgcttctgca 198 ||||| |||||||| || ||||| |||||||||| ||||| || | |||||| |||| Sbjct: 812 aagaaattctttgattacatacagcttccaaatttcgacattgctgccgatgctgctgct 871 Query: 199 accttcaaggnaacttctgacaaggcataa 228 || || |||| |||| |||||||||||||| Sbjct: 872 acttttaagg-aactgctgacaaggcataa 900
>emb|BX831657.1|CNS09YVG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH21ZE04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1402 Score = 44.1 bits (22), Expect = 0.53 Identities = 74/90 (82%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 139 aagaagttctttgactatatacaaattccaaattttgacatagcatcagatgcttctgca 198 ||||| |||||||| || ||||| |||||||||| ||||| || | |||||| |||| Sbjct: 795 aagaaattctttgattacatacagcttccaaatttcgacattgctgccgatgctgctgct 854 Query: 199 accttcaaggnaacttctgacaaggcataa 228 || || |||| |||| |||||||||||||| Sbjct: 855 acttttaagg-aactgctgacaaggcataa 883
>gb|AE014840.1| Plasmodium falciparum 3D7 chromosome 11 section 5 of 8 of the complete sequence Length = 249995 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 145 ttctttgactatatacaaatt 165 ||||||||||||||||||||| Sbjct: 38001 ttctttgactatatacaaatt 38021
>gb|AC183494.1| Brassica oleracea Contig C, complete sequence Length = 285752 Score = 42.1 bits (21), Expect = 2.1 Identities = 39/45 (86%) Strand = Plus / Plus Query: 56 gctttacattatggtgcaatgttgagggaatgtattcgccatcag 100 ||||| ||||||||||| ||||| ||||| || || ||||||||| Sbjct: 48007 gctttgcattatggtgctatgtttagggagtgcatccgccatcag 48051
>gb|AC019208.8| Homo sapiens BAC clone RP11-439J5 from 2, complete sequence Length = 188164 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 ttttcatgtgttcaagctatt 486 ||||||||||||||||||||| Sbjct: 31030 ttttcatgtgttcaagctatt 31010
>gb|AC183681.2| Pan troglodytes BAC clone CH251-278I15 from chromosome unknown, complete sequence Length = 185618 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 aaataaaaacaaaccagctg 512 |||||||||||||||||||| Sbjct: 44605 aaataaaaacaaaccagctg 44586
>gb|AC162443.3| Mus musculus chromosome 7, clone RP23-457F4, complete sequence Length = 176520 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 gcaaataaaaacaaaccagc 510 |||||||||||||||||||| Sbjct: 140675 gcaaataaaaacaaaccagc 140656
>gb|AC126439.3| Mus musculus BAC clone RP24-290I17 from chromosome 14, complete sequence Length = 163978 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 aagcaactatataacaaaga 323 |||||||||||||||||||| Sbjct: 27431 aagcaactatataacaaaga 27450
>emb|AL133257.17| Human DNA sequence from clone RP1-166D18 on chromosome 6q22.1-22.33 Contains part of the TRDN gene for triadin (TDN, TRIADIN), complete sequence Length = 130748 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 tttctttcaaagaactatga 264 |||||||||||||||||||| Sbjct: 9879 tttctttcaaagaactatga 9898
>emb|BX957307.12| Zebrafish DNA sequence from clone CH211-117E20 in linkage group 6, complete sequence Length = 171645 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 570 tcaaaactgacaaagaggat 589 |||||||||||||||||||| Sbjct: 36090 tcaaaactgacaaagaggat 36071
>gb|AC018924.9| Homo sapiens chromosome 15 clone RP11-355D13 map 15q15, complete sequence Length = 182764 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 aaataaaaacaaaccagctg 512 |||||||||||||||||||| Sbjct: 70910 aaataaaaacaaaccagctg 70891
>gb|AC126178.6| Homo sapiens 12 BAC RP11-567C2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 127439 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 489 ctgcaaataaaaacaaacca 508 |||||||||||||||||||| Sbjct: 106178 ctgcaaataaaaacaaacca 106197
>emb|BX000447.10| Zebrafish DNA sequence from clone DKEY-157O17 in linkage group 8, complete sequence Length = 118548 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 490 tgcaaataaaaacaaaccag 509 |||||||||||||||||||| Sbjct: 6848 tgcaaataaaaacaaaccag 6829
>ref|XM_703869.1| PREDICTED: Danio rerio similar to phosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila), transcript variant 8 (LOC565706), mRNA Length = 1920 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 tcaaaactgacaaagaggat 589 |||||||||||||||||||| Sbjct: 449 tcaaaactgacaaagaggat 468
>ref|XM_682743.1| PREDICTED: Danio rerio similar to phosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila), transcript variant 1 (LOC565706), mRNA Length = 1701 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 tcaaaactgacaaagaggat 589 |||||||||||||||||||| Sbjct: 587 tcaaaactgacaaagaggat 606
>ref|XM_703868.1| PREDICTED: Danio rerio similar to phosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila), transcript variant 7 (LOC565706), mRNA Length = 1821 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 tcaaaactgacaaagaggat 589 |||||||||||||||||||| Sbjct: 449 tcaaaactgacaaagaggat 468
>ref|XM_703867.1| PREDICTED: Danio rerio similar to phosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila), transcript variant 6 (LOC565706), mRNA Length = 1755 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 tcaaaactgacaaagaggat 589 |||||||||||||||||||| Sbjct: 449 tcaaaactgacaaagaggat 468
>ref|XM_703866.1| PREDICTED: Danio rerio similar to phosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila), transcript variant 5 (LOC565706), mRNA Length = 1893 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 tcaaaactgacaaagaggat 589 |||||||||||||||||||| Sbjct: 587 tcaaaactgacaaagaggat 606
>ref|XM_703865.1| PREDICTED: Danio rerio similar to phosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila), transcript variant 4 (LOC565706), mRNA Length = 2085 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 tcaaaactgacaaagaggat 589 |||||||||||||||||||| Sbjct: 587 tcaaaactgacaaagaggat 606
>ref|XM_703864.1| PREDICTED: Danio rerio similar to phosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila), transcript variant 3 (LOC565706), mRNA Length = 1965 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 tcaaaactgacaaagaggat 589 |||||||||||||||||||| Sbjct: 587 tcaaaactgacaaagaggat 606
>ref|XM_703863.1| PREDICTED: Danio rerio similar to phosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila), transcript variant 2 (LOC565706), mRNA Length = 2058 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 tcaaaactgacaaagaggat 589 |||||||||||||||||||| Sbjct: 587 tcaaaactgacaaagaggat 606
>ref|XM_682203.1| PREDICTED: Danio rerio similar to phosphodiesterase 4B, cAMP specific, transcript variant 1 (LOC565068), mRNA Length = 1563 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 tcaaaactgacaaagaggat 589 |||||||||||||||||||| Sbjct: 449 tcaaaactgacaaagaggat 468
>ref|XM_703634.1| PREDICTED: Danio rerio similar to phosphodiesterase 4B, cAMP specific, transcript variant 7 (LOC565068), mRNA Length = 1821 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 tcaaaactgacaaagaggat 589 |||||||||||||||||||| Sbjct: 449 tcaaaactgacaaagaggat 468
>ref|XM_703633.1| PREDICTED: Danio rerio similar to phosphodiesterase 4B, cAMP specific, transcript variant 6 (LOC565068), mRNA Length = 1947 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 tcaaaactgacaaagaggat 589 |||||||||||||||||||| Sbjct: 449 tcaaaactgacaaagaggat 468
>ref|XM_703632.1| PREDICTED: Danio rerio similar to phosphodiesterase 4B, cAMP specific, transcript variant 5 (LOC565068), mRNA Length = 1755 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 tcaaaactgacaaagaggat 589 |||||||||||||||||||| Sbjct: 449 tcaaaactgacaaagaggat 468
>ref|XM_703631.1| PREDICTED: Danio rerio similar to phosphodiesterase 4B, cAMP specific, transcript variant 4 (LOC565068), mRNA Length = 1827 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 tcaaaactgacaaagaggat 589 |||||||||||||||||||| Sbjct: 449 tcaaaactgacaaagaggat 468
>ref|XM_703630.1| PREDICTED: Danio rerio similar to phosphodiesterase 4B, cAMP specific, transcript variant 3 (LOC565068), mRNA Length = 1971 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 tcaaaactgacaaagaggat 589 |||||||||||||||||||| Sbjct: 449 tcaaaactgacaaagaggat 468
>ref|XM_703629.1| PREDICTED: Danio rerio similar to phosphodiesterase 4B, cAMP specific, transcript variant 2 (LOC565068), mRNA Length = 1920 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 tcaaaactgacaaagaggat 589 |||||||||||||||||||| Sbjct: 449 tcaaaactgacaaagaggat 468
>emb|BX005205.17| Zebrafish DNA sequence from clone DKEY-210P14 in linkage group 16, complete sequence Length = 164219 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 471 atgtgttcaagctattcgct 490 |||||||||||||||||||| Sbjct: 112503 atgtgttcaagctattcgct 112522
>gb|AC158369.4| Pan troglodytes BAC clone CH251-554F11 from chromosome unknown, complete sequence Length = 201901 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 aaataaaaacaaaccagctg 512 |||||||||||||||||||| Sbjct: 145683 aaataaaaacaaaccagctg 145664
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 tcatcaagcaactatataac 318 |||||||||||||||||||| Sbjct: 5841539 tcatcaagcaactatataac 5841520
>dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 1, complete sequence Length = 3288558 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 tatgttggttcaaaagataa 408 |||||||||||||||||||| Sbjct: 2699284 tatgttggttcaaaagataa 2699265
>gb|AC159186.4| Mus musculus BAC clone RP24-281N15 from chromosome 12, complete sequence Length = 180125 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 tcagatgcttctgcaacctt 203 |||||||||||||||||||| Sbjct: 38941 tcagatgcttctgcaacctt 38960
>dbj|AP005442.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0073I05 Length = 182291 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 tcatcaagcaactatataac 318 |||||||||||||||||||| Sbjct: 28649 tcatcaagcaactatataac 28630
>emb|BX088594.5| Zebrafish DNA sequence from clone RP71-1G17 in linkage group 1, complete sequence Length = 144022 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 436 ggactcaagcaaaaatattcagat 459 ||||||||||||||| |||||||| Sbjct: 47392 ggactcaagcaaaaaaattcagat 47415
>dbj|AP004589.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0556A11 Length = 138096 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 tcatcaagcaactatataac 318 |||||||||||||||||||| Sbjct: 95684 tcatcaagcaactatataac 95665
>dbj|AK105596.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-A01, full insert sequence Length = 1779 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 tcatcaagcaactatataac 318 |||||||||||||||||||| Sbjct: 762 tcatcaagcaactatataac 781
>gb|AC131727.4| Mus musculus BAC clone RP23-120E19 from 14, complete sequence Length = 208338 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 aagcaactatataacaaaga 323 |||||||||||||||||||| Sbjct: 205233 aagcaactatataacaaaga 205252
>gb|AF144608.1|AF144608 Vibrio parahaemolyticus lipoprotein NlpD (nlpD) gene, partial cds; RNA polymerase sigma factor RpoS (rpoS) gene, complete cds; and DNA mismatch repair protein MutS (mutS) gene, partial cds Length = 2149 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 tatgttggttcaaaagataa 408 |||||||||||||||||||| Sbjct: 178 tatgttggttcaaaagataa 197 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,162,253 Number of Sequences: 3902068 Number of extensions: 6162253 Number of successful extensions: 128518 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 128273 Number of HSP's gapped (non-prelim): 244 length of query: 606 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 583 effective length of database: 17,143,297,704 effective search space: 9994542561432 effective search space used: 9994542561432 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)