ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd25a04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK072665.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133N19, full insert sequence Length = 1283 Score = 500 bits (252), Expect = e-138 Identities = 447/512 (87%) Strand = Plus / Plus Query: 16 gttccatttgaagaggctcttgctgcccggatttcgttaatcaagccatctctgtcccaa 75 ||||||||||| ||||| || |||||| || | |||||||| ||||||| |||||||||| Sbjct: 517 gttccatttgaggaggcactagctgccaggctatcgttaattaagccatatctgtcccaa 576 Query: 76 gtccaggactgcttggagaagaggccacccaggatttctcctggaatcgctgatttgatt 135 || | ||||| || | ||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 577 gttgatgactgtttagtgaagaggcctccaaggatttctcctggaattgctgacttgatt 636 Query: 136 aaaacgttattagctaataatactgaagtgttccttgtgtcaggaggtttccgacaaatg 195 || | | | ||| ||||||||||| || |||||||||||||||||||| ||||||||| Sbjct: 637 aagaagctcaaagcaaataatactgatgtattccttgtgtcaggaggttttcgacaaatg 696 Query: 196 atcgagcctgtggcatttgagcttggcattcctactgaaaacatcatagcgaacagactg 255 ||| |||||||||||| |||||||||||||||| ||||||||||||| || ||| ||| Sbjct: 697 atcaagcctgtggcatctgagcttggcattcctcctgaaaacatcattgcaaaccaactt 756 Query: 256 ctatttggtacatccggagagtatgctggatttgataccacagaacccacttctcgaagt 315 || ||||| ||||| ||||||||||||||||||||| |||| ||||||||||| |||||| Sbjct: 757 ctttttggaacatctggagagtatgctggatttgatcccactgaacccacttcacgaagt 816 Query: 316 gggggtaaggcagtagcagtgcaacaaataagacaggatcgtggttacaagacgctggtt 375 |||||||| ||| ||||||| |||||||| |||||| | | |||||| ||||| || ||| Sbjct: 817 gggggtaaagcactagcagtccaacaaattagacagaaccatggttataagacacttgtt 876 Query: 376 atgattggagatggtgcaactgatcttgaggctcggcaacctggtggagcagacttgttc 435 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct: 877 atgattggagatggtgcaactgatcttgaggctcggcagcctggaggagcagacttgttc 936 Query: 436 atctgttacgccggtgtccagatgagagaagcagttgcagccaaagctgactggaccgtc 495 ||||||||||| ||||||||||||||||||||||||||||| ||||| || ||| ||| Sbjct: 937 atctgttacgcaggtgtccagatgagagaagcagttgcagcaaaagcagattgggttgtc 996 Query: 496 tttgaatttcaagaactaatttctgaattgcc 527 | || ||||||||||||||||| |||||||| Sbjct: 997 atcgattttcaagaactaatttcagaattgcc 1028
>gb|AY103760.1| Zea mays PCO110275 mRNA sequence Length = 2705 Score = 371 bits (187), Expect = 2e-99 Identities = 413/487 (84%), Gaps = 1/487 (0%) Strand = Plus / Plus Query: 3 atgacagggnaccgttccatttgaagaggctcttgctgcccggatttcgttaatcaagcc 62 ||||||||| || ||||| ||||| ||||| || || ||| || | || ||||||||||| Sbjct: 430 atgacaggg-actgttccgtttgaggaggcgctggcagccaggctgtctttaatcaagcc 488 Query: 63 atctctgtcccaagtccaggactgcttggagaagaggccacccaggatttctcctggaat 122 |||||| ||||| || |||| ||| |||||||||||||||| ||||||||||||||||| Sbjct: 489 atctctctcccaggtggaggagtgcctggagaagaggccaccaaggatttctcctggaat 548 Query: 123 cgctgatttgattaaaacgttattagctaataatactgaagtgttccttgtgtcaggagg 182 ||||||||| |||| | | || | | ||||||| ||| |||||||||||||||||||| Sbjct: 549 ggctgatttggttaagaagctaaaatccaataatattgatgtgttccttgtgtcaggagg 608 Query: 183 tttccgacaaatgatcgagcctgtggcatttgagcttggcattcctactgaaaacatcat 242 |||||||| |||||| | || |||||||||||||||||||||||| |||||||||||| Sbjct: 609 cttccgacacatgatcaaaccagtggcatttgagcttggcattcctcctgaaaacatcac 668 Query: 243 agcgaacagactgctatttggtacatccggagagtatgctggatttgataccacagaacc 302 || ||| | || ||||||| |||| || ||||| || ||||||||| ||||||| || Sbjct: 669 tgcaaaccaattgttatttggcacattgggggagtacgccggatttgatcccacagagcc 728 Query: 303 cacttctcgaagtgggggtaaggcagtagcagtgcaacaaataagacaggatcgtggtta 362 |||||| || ||||||||||| ||| ||||||||| ||||||| |||||| | ||| || Sbjct: 729 cacttcacgcagtgggggtaaagcaaaagcagtgcagcaaataaaacaggaccatggcta 788 Query: 363 caagacgctggttatgattggagatggtgcaactgatcttgaggctcggcaacctggtgg 422 |||||| | ||||||||||| ||||| ||||||||||| ||||||||||||||||| || Sbjct: 789 caagacagttgttatgattggtgatggcgcaactgatctggaggctcggcaacctggcgg 848 Query: 423 agcagacttgttcatctgttacgccggtgtccagatgagagaagcagttgcagccaaagc 482 ||||||||||||||||||||||||||| || ||||||||||| |||| ||||| |||| Sbjct: 849 agcagacttgttcatctgttacgccggggttcagatgagagagccagtcgcagcacaagc 908 Query: 483 tgactgg 489 ||||||| Sbjct: 909 tgactgg 915
>gb|AC109832.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone P0038B07, complete sequence Length = 149697 Score = 168 bits (85), Expect = 1e-38 Identities = 136/153 (88%) Strand = Plus / Minus Query: 200 agcctgtggcatttgagcttggcattcctactgaaaacatcatagcgaacagactgctat 259 |||||||||||| |||||||||||||||| ||||||||||||| || ||| ||| || | Sbjct: 137579 agcctgtggcatctgagcttggcattcctcctgaaaacatcattgcaaaccaacttcttt 137520 Query: 260 ttggtacatccggagagtatgctggatttgataccacagaacccacttctcgaagtgggg 319 |||| ||||| ||||||||||||||||||||| |||| ||||||||||| |||||||||| Sbjct: 137519 ttggaacatctggagagtatgctggatttgatcccactgaacccacttcacgaagtgggg 137460 Query: 320 gtaaggcagtagcagtgcaacaaataagacagg 352 |||| ||| ||||||| |||||||| ||||||| Sbjct: 137459 gtaaagcactagcagtccaacaaattagacagg 137427 Score = 143 bits (72), Expect = 7e-31 Identities = 111/124 (89%) Strand = Plus / Minus Query: 404 aggctcggcaacctggtggagcagacttgttcatctgttacgccggtgtccagatgagag 463 |||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct: 136616 aggctcggcagcctggaggagcagacttgttcatctgttacgcaggtgtccagatgagag 136557 Query: 464 aagcagttgcagccaaagctgactggaccgtctttgaatttcaagaactaatttctgaat 523 ||||||||||||| ||||| || ||| ||| | || ||||||||||||||||| |||| Sbjct: 136556 aagcagttgcagcaaaagcagattgggttgtcatcgattttcaagaactaatttcagaat 136497 Query: 524 tgcc 527 |||| Sbjct: 136496 tgcc 136493 Score = 91.7 bits (46), Expect = 2e-15 Identities = 82/94 (87%) Strand = Plus / Minus Query: 105 caggatttctcctggaatcgctgatttgattaaaacgttattagctaataatactgaagt 164 |||||||||||||||||| ||||| |||||||| | | | ||| ||||||||||| || Sbjct: 138053 caggatttctcctggaattgctgacttgattaagaagctcaaagcaaataatactgatgt 137994 Query: 165 gttccttgtgtcaggaggtttccgacaaatgatc 198 |||||||||||||||||||| |||||||||||| Sbjct: 137993 attccttgtgtcaggaggttttcgacaaatgatc 137960 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Minus Query: 357 tggttacaagacgctggttatgattggagatggtgcaactgatcttgagg 406 |||||| ||||| || |||||||||||||||||||||||||||||||||| Sbjct: 137345 tggttataagacacttgttatgattggagatggtgcaactgatcttgagg 137296 Score = 60.0 bits (30), Expect = 8e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 16 gttccatttgaagaggctcttgctgcccggatttcgttaatcaagccatctctgtcccaa 75 ||||||||||| ||||| || |||||| || | |||||||| ||||||| |||||||||| Sbjct: 138589 gttccatttgaggaggcactagctgccaggctatcgttaattaagccatatctgtcccaa 138530 Query: 76 gt 77 || Sbjct: 138529 gt 138528
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 168 bits (85), Expect = 1e-38 Identities = 136/153 (88%) Strand = Plus / Minus Query: 200 agcctgtggcatttgagcttggcattcctactgaaaacatcatagcgaacagactgctat 259 |||||||||||| |||||||||||||||| ||||||||||||| || ||| ||| || | Sbjct: 23801541 agcctgtggcatctgagcttggcattcctcctgaaaacatcattgcaaaccaacttcttt 23801482 Query: 260 ttggtacatccggagagtatgctggatttgataccacagaacccacttctcgaagtgggg 319 |||| ||||| ||||||||||||||||||||| |||| ||||||||||| |||||||||| Sbjct: 23801481 ttggaacatctggagagtatgctggatttgatcccactgaacccacttcacgaagtgggg 23801422 Query: 320 gtaaggcagtagcagtgcaacaaataagacagg 352 |||| ||| ||||||| |||||||| ||||||| Sbjct: 23801421 gtaaagcactagcagtccaacaaattagacagg 23801389 Score = 143 bits (72), Expect = 7e-31 Identities = 111/124 (89%) Strand = Plus / Minus Query: 404 aggctcggcaacctggtggagcagacttgttcatctgttacgccggtgtccagatgagag 463 |||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct: 23800578 aggctcggcagcctggaggagcagacttgttcatctgttacgcaggtgtccagatgagag 23800519 Query: 464 aagcagttgcagccaaagctgactggaccgtctttgaatttcaagaactaatttctgaat 523 ||||||||||||| ||||| || ||| ||| | || ||||||||||||||||| |||| Sbjct: 23800518 aagcagttgcagcaaaagcagattgggttgtcatcgattttcaagaactaatttcagaat 23800459 Query: 524 tgcc 527 |||| Sbjct: 23800458 tgcc 23800455 Score = 91.7 bits (46), Expect = 2e-15 Identities = 82/94 (87%) Strand = Plus / Minus Query: 105 caggatttctcctggaatcgctgatttgattaaaacgttattagctaataatactgaagt 164 |||||||||||||||||| ||||| |||||||| | | | ||| ||||||||||| || Sbjct: 23802015 caggatttctcctggaattgctgacttgattaagaagctcaaagcaaataatactgatgt 23801956 Query: 165 gttccttgtgtcaggaggtttccgacaaatgatc 198 |||||||||||||||||||| |||||||||||| Sbjct: 23801955 attccttgtgtcaggaggttttcgacaaatgatc 23801922 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Minus Query: 357 tggttacaagacgctggttatgattggagatggtgcaactgatcttgagg 406 |||||| ||||| || |||||||||||||||||||||||||||||||||| Sbjct: 23801307 tggttataagacacttgttatgattggagatggtgcaactgatcttgagg 23801258 Score = 60.0 bits (30), Expect = 8e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 16 gttccatttgaagaggctcttgctgcccggatttcgttaatcaagccatctctgtcccaa 75 ||||||||||| ||||| || |||||| || | |||||||| ||||||| |||||||||| Sbjct: 23802551 gttccatttgaggaggcactagctgccaggctatcgttaattaagccatatctgtcccaa 23802492 Query: 76 gt 77 || Sbjct: 23802491 gt 23802490
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 168 bits (85), Expect = 1e-38 Identities = 136/153 (88%) Strand = Plus / Minus Query: 200 agcctgtggcatttgagcttggcattcctactgaaaacatcatagcgaacagactgctat 259 |||||||||||| |||||||||||||||| ||||||||||||| || ||| ||| || | Sbjct: 24113210 agcctgtggcatctgagcttggcattcctcctgaaaacatcattgcaaaccaacttcttt 24113151 Query: 260 ttggtacatccggagagtatgctggatttgataccacagaacccacttctcgaagtgggg 319 |||| ||||| ||||||||||||||||||||| |||| ||||||||||| |||||||||| Sbjct: 24113150 ttggaacatctggagagtatgctggatttgatcccactgaacccacttcacgaagtgggg 24113091 Query: 320 gtaaggcagtagcagtgcaacaaataagacagg 352 |||| ||| ||||||| |||||||| ||||||| Sbjct: 24113090 gtaaagcactagcagtccaacaaattagacagg 24113058 Score = 143 bits (72), Expect = 7e-31 Identities = 111/124 (89%) Strand = Plus / Minus Query: 404 aggctcggcaacctggtggagcagacttgttcatctgttacgccggtgtccagatgagag 463 |||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct: 24112247 aggctcggcagcctggaggagcagacttgttcatctgttacgcaggtgtccagatgagag 24112188 Query: 464 aagcagttgcagccaaagctgactggaccgtctttgaatttcaagaactaatttctgaat 523 ||||||||||||| ||||| || ||| ||| | || ||||||||||||||||| |||| Sbjct: 24112187 aagcagttgcagcaaaagcagattgggttgtcatcgattttcaagaactaatttcagaat 24112128 Query: 524 tgcc 527 |||| Sbjct: 24112127 tgcc 24112124 Score = 91.7 bits (46), Expect = 2e-15 Identities = 82/94 (87%) Strand = Plus / Minus Query: 105 caggatttctcctggaatcgctgatttgattaaaacgttattagctaataatactgaagt 164 |||||||||||||||||| ||||| |||||||| | | | ||| ||||||||||| || Sbjct: 24113684 caggatttctcctggaattgctgacttgattaagaagctcaaagcaaataatactgatgt 24113625 Query: 165 gttccttgtgtcaggaggtttccgacaaatgatc 198 |||||||||||||||||||| |||||||||||| Sbjct: 24113624 attccttgtgtcaggaggttttcgacaaatgatc 24113591 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Minus Query: 357 tggttacaagacgctggttatgattggagatggtgcaactgatcttgagg 406 |||||| ||||| || |||||||||||||||||||||||||||||||||| Sbjct: 24112976 tggttataagacacttgttatgattggagatggtgcaactgatcttgagg 24112927 Score = 60.0 bits (30), Expect = 8e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 16 gttccatttgaagaggctcttgctgcccggatttcgttaatcaagccatctctgtcccaa 75 ||||||||||| ||||| || |||||| || | |||||||| ||||||| |||||||||| Sbjct: 24114220 gttccatttgaggaggcactagctgccaggctatcgttaattaagccatatctgtcccaa 24114161 Query: 76 gt 77 || Sbjct: 24114160 gt 24114159
>dbj|AK111001.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-E12, full insert sequence Length = 1353 Score = 149 bits (75), Expect = 1e-32 Identities = 333/419 (79%) Strand = Plus / Plus Query: 56 tcaagccatctctgtcccaagtccaggactgcttggagaagaggccacccaggatttctc 115 ||||||||||| || ||||| |||||||| |||||||| ||||||| || || |||| Sbjct: 525 tcaagccatctttggggcaagttgaggactgcatggagaagcggccaccaagaatatctc 584 Query: 116 ctggaatcgctgatttgattaaaacgttattagctaataatactgaagtgttccttgtgt 175 ||||||| ||||| | |||| | | | |||||| ||| ||| |||| ||| || | Sbjct: 585 ctggaattgctgagcttgttaagatgctgaaagctaaaaatgttgatgtgtacctggttt 644 Query: 176 caggaggtttccgacaaatgatcgagcctgtggcatttgagcttggcattcctactgaaa 235 | ||||| |||||||| |||||| ||||||| ||| | |||| ||||||||| |||||| Sbjct: 645 ctggaggcttccgacagatgatcaagcctgttgcaatgcagctcggcattcctcctgaaa 704 Query: 236 acatcatagcgaacagactgctatttggtacatccggagagtatgctggatttgatacca 295 | || | || ||| | || ||||| || || |||||||||| ||| ||||| | Sbjct: 705 atatttttgcaaaccagttactgtttggaacttctggagagtatgttggttttgaccctt 764 Query: 296 cagaacccacttctcgaagtgggggtaaggcagtagcagtgcaacaaataagacaggatc 355 |||| || ||||| |||||||| || || || |||||||| ||| | ||||||||| | Sbjct: 765 cagagcctacttcacgaagtggaggcaaagctgtagcagttcaaaacataagacagaagt 824 Query: 356 gtggttacaagacgctggttatgattggagatggtgcaactgatcttgaggctcggcaac 415 ||||||||| ||| || ||||| |||||||||||||||||||||||||||||||||||| Sbjct: 825 gtggttacaggacactctttatggttggagatggtgcaactgatcttgaggctcggcaac 884 Query: 416 ctggtggagcagacttgttcatctgttacgccggtgtccagatgagagaagcagttgca 474 || ||||||||||||||| ||||| || || ||||| |||||||| ||||| |||||| Sbjct: 885 ctaatggagcagacttgtttatctgctatgctggtgtgcagatgagggaagcggttgca 943
>gb|AF114171.1| Sorghum bicolor BAC clone 25.M18, complete sequence Length = 183990 Score = 113 bits (57), Expect = 6e-22 Identities = 129/153 (84%) Strand = Plus / Minus Query: 200 agcctgtggcatttgagcttggcattcctactgaaaacatcatagcgaacagactgctat 259 |||||||||||||| ||||||| |||||| |||||||||||| || ||| | || ||| Sbjct: 149040 agcctgtggcatttcagcttggtattcctcctgaaaacatcactgcaaaccaattgttat 148981 Query: 260 ttggtacatccggagagtatgctggatttgataccacagaacccacttctcgaagtgggg 319 |||| || || || |||||||||||||||||| ||||||| |||||||| || ||||||| Sbjct: 148980 ttggcacttcgggggagtatgctggatttgatcccacagagcccacttcacgcagtgggg 148921 Query: 320 gtaaggcagtagcagtgcaacaaataagacagg 352 |||| ||| ||||||||| |||||| ||||| Sbjct: 148920 gtaaagcaaaagcagtgcagaaaataaaacagg 148888 Score = 107 bits (54), Expect = 4e-20 Identities = 93/106 (87%) Strand = Plus / Minus Query: 404 aggctcggcaacctggtggagcagacttgttcatctgttacgccggtgtccagatgagag 463 |||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||| Sbjct: 148272 aggctcggcaacctggtggagcggacttgttcatctgttacgctggtgttcagatgagag 148213 Query: 464 aagcagttgcagccaaagctgactggaccgtctttgaatttcaaga 509 | |||| ||||| |||||||||| |||||||| |||||||| Sbjct: 148212 agccagtcgcagcattagctgactgggtggtctttgattttcaaga 148167 Score = 83.8 bits (42), Expect = 5e-13 Identities = 81/94 (86%) Strand = Plus / Minus Query: 105 caggatttctcctggaatcgctgatttgattaaaacgttattagctaataatactgaagt 164 |||||||||||||||||| |||||||| |||| | | || | | ||||||| ||| || Sbjct: 149453 caggatttctcctggaatggctgatttagttaagaagctaaaatccaataatattgatgt 149394 Query: 165 gttccttgtgtcaggaggtttccgacaaatgatc 198 |||||||||||||||||| ||||||||||||||| Sbjct: 149393 gttccttgtgtcaggaggcttccgacaaatgatc 149360 Score = 67.9 bits (34), Expect = 3e-08 Identities = 86/102 (84%), Gaps = 1/102 (0%) Strand = Plus / Minus Query: 3 atgacagggnaccgttccatttgaagaggctcttgctgcccggatttcgttaatcaagcc 62 ||||||||| || ||||||||||| ||||| || || ||| || | || ||||||||||| Sbjct: 150061 atgacaggg-actgttccatttgaggaggcgctggcagccaggctgtctttaatcaagcc 150003 Query: 63 atctctgtcccaagtccaggactgcttggagaagaggccacc 104 |||||| ||||| || |||| ||| |||||||||||||||| Sbjct: 150002 atctctctcccaggtggaggaatgcctggagaagaggccacc 149961 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 373 gttatgattggagatggtgcaactgatcttgagg 406 ||||||||||| ||||||||||||||||| |||| Sbjct: 148796 gttatgattggtgatggtgcaactgatctggagg 148763
>emb|BX813714.1|CNS0ADSN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB35ZG12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 767 Score = 79.8 bits (40), Expect = 8e-12 Identities = 97/116 (83%) Strand = Plus / Plus Query: 331 gcagtgcaacaaataagacaggatcgtggttacaagacgctggttatgattggagatggt 390 ||||||||||||||| || ||| |||| |||||||| ||| ||||||||||||||| Sbjct: 399 gcagtgcaacaaatacgaaagggtcgtctctacaagactatggccatgattggagatggt 458 Query: 391 gcaactgatcttgaggctcggcaacctggtggagcagacttgttcatctgttacgc 446 || |||||||| || || || |||||||||||||||| |||||||| || ||||| Sbjct: 459 gctactgatctcgaagcacgtaaacctggtggagcagatttgttcatatgctacgc 514
>ref|NM_202129.1| Arabidopsis thaliana PSP (3-PHOSPHOSERINE PHOSPHATASE) AT1G18640 (PSP) transcript variant AT1G18640.2 mRNA, complete cds Length = 1188 Score = 71.9 bits (36), Expect = 2e-09 Identities = 96/116 (82%) Strand = Plus / Plus Query: 331 gcagtgcaacaaataagacaggatcgtggttacaagacgctggttatgattggagatggt 390 ||||||||||||||| || ||| |||| |||||||| ||| ||||||||||||||| Sbjct: 825 gcagtgcaacaaatacgaaagggtcgtctctacaagactatggccatgattggagatggt 884 Query: 391 gcaactgatcttgaggctcggcaacctggtggagcagacttgttcatctgttacgc 446 || |||||||| || || || |||||||||| ||||| |||||||| || ||||| Sbjct: 885 gctactgatctcgaagcacgtaaacctggtggcgcagatttgttcatatgctacgc 940
>ref|NM_101722.3| Arabidopsis thaliana PSP (3-PHOSPHOSERINE PHOSPHATASE) AT1G18640 (PSP) transcript variant AT1G18640.1 mRNA, complete cds Length = 1140 Score = 71.9 bits (36), Expect = 2e-09 Identities = 96/116 (82%) Strand = Plus / Plus Query: 331 gcagtgcaacaaataagacaggatcgtggttacaagacgctggttatgattggagatggt 390 ||||||||||||||| || ||| |||| |||||||| ||| ||||||||||||||| Sbjct: 825 gcagtgcaacaaatacgaaagggtcgtctctacaagactatggccatgattggagatggt 884 Query: 391 gcaactgatcttgaggctcggcaacctggtggagcagacttgttcatctgttacgc 446 || |||||||| || || || |||||||||| ||||| |||||||| || ||||| Sbjct: 885 gctactgatctcgaagcacgtaaacctggtggcgcagatttgttcatatgctacgc 940
>gb|AY096687.1| Arabidopsis thaliana putative 3-phosphoserine phosphatase (At1g18640) mRNA, complete cds Length = 919 Score = 71.9 bits (36), Expect = 2e-09 Identities = 96/116 (82%) Strand = Plus / Plus Query: 331 gcagtgcaacaaataagacaggatcgtggttacaagacgctggttatgattggagatggt 390 ||||||||||||||| || ||| |||| |||||||| ||| ||||||||||||||| Sbjct: 688 gcagtgcaacaaatacgaaagggtcgtctctacaagactatggccatgattggagatggt 747 Query: 391 gcaactgatcttgaggctcggcaacctggtggagcagacttgttcatctgttacgc 446 || |||||||| || || || |||||||||| ||||| |||||||| || ||||| Sbjct: 748 gctactgatctcgaagcacgtaaacctggtggcgcagatttgttcatatgctacgc 803
>gb|AY065351.1| Arabidopsis thaliana putative 3-phosphoserine phosphatase (At1g18640) mRNA, complete cds Length = 1138 Score = 71.9 bits (36), Expect = 2e-09 Identities = 96/116 (82%) Strand = Plus / Plus Query: 331 gcagtgcaacaaataagacaggatcgtggttacaagacgctggttatgattggagatggt 390 ||||||||||||||| || ||| |||| |||||||| ||| ||||||||||||||| Sbjct: 825 gcagtgcaacaaatacgaaagggtcgtctctacaagactatggccatgattggagatggt 884 Query: 391 gcaactgatcttgaggctcggcaacctggtggagcagacttgttcatctgttacgc 446 || |||||||| || || || |||||||||| ||||| |||||||| || ||||| Sbjct: 885 gctactgatctcgaagcacgtaaacctggtggcgcagatttgttcatatgctacgc 940
>emb|BX813791.1|CNS0ADTQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB3ZC03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 393 Score = 71.9 bits (36), Expect = 2e-09 Identities = 96/116 (82%) Strand = Plus / Plus Query: 331 gcagtgcaacaaataagacaggatcgtggttacaagacgctggttatgattggagatggt 390 ||||||||||||||| || ||| |||| |||||||| ||| ||||||||||||||| Sbjct: 78 gcagtgcaacaaatacgaaagggtcgtctctacaagactatggccatgattggagatggt 137 Query: 391 gcaactgatcttgaggctcggcaacctggtggagcagacttgttcatctgttacgc 446 || |||||||| || || || |||||||||| ||||| |||||||| || ||||| Sbjct: 138 gctactgatctcgaagcacgtaaacctggtggcgcagatttgttcatatgctacgc 193
>gb|AY087385.1| Arabidopsis thaliana clone 34821 mRNA, complete sequence Length = 1079 Score = 71.9 bits (36), Expect = 2e-09 Identities = 96/116 (82%) Strand = Plus / Plus Query: 331 gcagtgcaacaaataagacaggatcgtggttacaagacgctggttatgattggagatggt 390 ||||||||||||||| || ||| |||| |||||||| ||| ||||||||||||||| Sbjct: 786 gcagtgcaacaaatacgaaagggtcgtctctacaagactatggccatgattggagatggt 845 Query: 391 gcaactgatcttgaggctcggcaacctggtggagcagacttgttcatctgttacgc 446 || |||||||| || || || |||||||||| ||||| |||||||| || ||||| Sbjct: 846 gctactgatctcgaagcacgtaaacctggtggcgcagatttgttcatatgctacgc 901
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 69.9 bits (35), Expect = 8e-09 Identities = 62/71 (87%) Strand = Plus / Minus Query: 404 aggctcggcaacctggtggagcagacttgttcatctgttacgccggtgtccagatgagag 463 |||||||||||||| ||||||||||||||| ||||| || || ||||| |||||||| | Sbjct: 19188728 aggctcggcaacctaatggagcagacttgtttatctgctatgctggtgtgcagatgaggg 19188669 Query: 464 aagcagttgca 474 |||| |||||| Sbjct: 19188668 aagcggttgca 19188658 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 356 gtggttacaagacgctggttatgattggagatggtgcaactgatcttgagg 406 ||||||||| ||| || ||||| ||||||||||||||||||||||||||| Sbjct: 19189413 gtggttacaggacactctttatggttggagatggtgcaactgatcttgagg 19189363
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 69.9 bits (35), Expect = 8e-09 Identities = 62/71 (87%) Strand = Plus / Minus Query: 404 aggctcggcaacctggtggagcagacttgttcatctgttacgccggtgtccagatgagag 463 |||||||||||||| ||||||||||||||| ||||| || || ||||| |||||||| | Sbjct: 19114955 aggctcggcaacctaatggagcagacttgtttatctgctatgctggtgtgcagatgaggg 19114896 Query: 464 aagcagttgca 474 |||| |||||| Sbjct: 19114895 aagcggttgca 19114885 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 356 gtggttacaagacgctggttatgattggagatggtgcaactgatcttgagg 406 ||||||||| ||| || ||||| ||||||||||||||||||||||||||| Sbjct: 19115640 gtggttacaggacactctttatggttggagatggtgcaactgatcttgagg 19115590
>emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC OJ1536_D01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 127026 Score = 69.9 bits (35), Expect = 8e-09 Identities = 62/71 (87%) Strand = Plus / Plus Query: 404 aggctcggcaacctggtggagcagacttgttcatctgttacgccggtgtccagatgagag 463 |||||||||||||| ||||||||||||||| ||||| || || ||||| |||||||| | Sbjct: 37253 aggctcggcaacctaatggagcagacttgtttatctgctatgctggtgtgcagatgaggg 37312 Query: 464 aagcagttgca 474 |||| |||||| Sbjct: 37313 aagcggttgca 37323 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 356 gtggttacaagacgctggttatgattggagatggtgcaactgatcttgagg 406 ||||||||| ||| || ||||| ||||||||||||||||||||||||||| Sbjct: 36568 gtggttacaggacactctttatggttggagatggtgcaactgatcttgagg 36618
>emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC OJ1510_A06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 136155 Score = 69.9 bits (35), Expect = 8e-09 Identities = 62/71 (87%) Strand = Plus / Minus Query: 404 aggctcggcaacctggtggagcagacttgttcatctgttacgccggtgtccagatgagag 463 |||||||||||||| ||||||||||||||| ||||| || || ||||| |||||||| | Sbjct: 22058 aggctcggcaacctaatggagcagacttgtttatctgctatgctggtgtgcagatgaggg 21999 Query: 464 aagcagttgca 474 |||| |||||| Sbjct: 21998 aagcggttgca 21988 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 356 gtggttacaagacgctggttatgattggagatggtgcaactgatcttgagg 406 ||||||||| ||| || ||||| ||||||||||||||||||||||||||| Sbjct: 22743 gtggttacaggacactctttatggttggagatggtgcaactgatcttgagg 22693
>dbj|AB018408.1| Arabidopsis thaliana mRNA for 3-phosphoserine phosphatase, complete cds Length = 1100 Score = 69.9 bits (35), Expect = 8e-09 Identities = 89/107 (83%) Strand = Plus / Plus Query: 331 gcagtgcaacaaataagacaggatcgtggttacaagacgctggttatgattggagatggt 390 ||||||||||||||| || ||| |||| |||||||| ||| ||||||||||||||| Sbjct: 771 gcagtgcaacaaatacgaaagggtcgtctctacaagactatggccatgattggagatggt 830 Query: 391 gcaactgatcttgaggctcggcaacctggtggagcagacttgttcat 437 || |||||||| || || || |||||||||| ||||| |||||||| Sbjct: 831 gctactgatctcgaagcacgtaaacctggtggcgcagatttgttcat 877
>gb|AC149136.3| Xenopus tropicalis clone CH216-164F21, complete sequence Length = 182684 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 97 aggccacccaggatttctcctgg 119 ||||||||||||||||||||||| Sbjct: 171581 aggccacccaggatttctcctgg 171559
>gb|AC026238.2| Arabidopsis thaliana chromosome I BAC F25I16 genomic sequence, complete sequence Length = 44879 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 376 atgattggagatggtgcaactgatct 401 ||||||||||||||||| |||||||| Sbjct: 4541 atgattggagatggtgctactgatct 4566
>dbj|AB018409.1| Arabidopsis thaliana gene for 3-phosphoserin phosphatase, complete cds Length = 1734 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 376 atgattggagatggtgcaactgatct 401 ||||||||||||||||| |||||||| Sbjct: 1485 atgattggagatggtgctactgatct 1510
>emb|CR356236.12| Zebrafish DNA sequence from clone CH211-251P4 in linkage group 13, complete sequence Length = 171465 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 atactgaagtgttccttgtgt 175 ||||||||||||||||||||| Sbjct: 98921 atactgaagtgttccttgtgt 98901
>gb|BT024176.1| Zea mays clone EL01N0421E04 mRNA sequence Length = 2068 Score = 42.1 bits (21), Expect = 1.8 Identities = 45/53 (84%) Strand = Plus / Plus Query: 52 ttaatcaagccatctctgtcccaagtccaggactgcttggagaagaggccacc 104 ||||||||||||||||| ||||| || | || ||| ||||||||||||||| Sbjct: 1038 ttaatcaagccatctctctcccaggtggaagagtgcccggagaagaggccacc 1090
>gb|AC069538.10| Homo sapiens chromosome 10 clone RP11-205C5, complete sequence Length = 169772 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 379 attggagatggtgcaactgatctt 402 ||||||||||||||| |||||||| Sbjct: 71361 attggagatggtgcagctgatctt 71338
>gb|AF106947.1| Musa x paradisiaca clone Musa8 cacao swollen shoot badnavirus sequence Length = 10129 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 ttcaagaactaatttctgaa 522 |||||||||||||||||||| Sbjct: 2811 ttcaagaactaatttctgaa 2792
>gb|AC079443.48| Mus musculus strain C57BL/6J clone rp23-381f7 map 6, complete sequence Length = 207091 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 aaggcagtagcagtgcaaca 341 |||||||||||||||||||| Sbjct: 197228 aaggcagtagcagtgcaaca 197247
>gb|AY135648.1| Branchiostoma floridae Hox gene, complete cds Length = 38796 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 tggagcagacttgttcatct 439 |||||||||||||||||||| Sbjct: 19936 tggagcagacttgttcatct 19917
>emb|BX537160.6| Human DNA sequence from clone RP11-1023P23 on chromosome 1 Contains the 5' end of the TAS1R2 gene for taste receptor, type 1, member 2 and the 3' end of the ALDH4A1 gene for aldehyde dehydrogenase 4 family, member A1, complete sequence Length = 17606 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 ggagaagaggccacccagga 109 |||||||||||||||||||| Sbjct: 4891 ggagaagaggccacccagga 4910
>emb|AL031120.1|HS459L4 Human DNA sequence from clone RP3-459L4 on chromosome 6p22.3-24.1 Contains part of the SCA1 gene for spinocerebellar ataxia 1 (olivopontocerebellar ataxia 1, autosomal dominant, ataxin 1), complete sequence Length = 165363 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 tggcattcctactgaaaaca 238 |||||||||||||||||||| Sbjct: 6171 tggcattcctactgaaaaca 6190
>gb|AC073176.8| Homo sapiens chromosome 10 clone RP11-432J9, complete sequence Length = 175610 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 379 attggagatggtgcaactgatctt 402 ||||||||||||||| |||||||| Sbjct: 14635 attggagatggtgcagctgatctt 14658
>emb|AJ551449.1|BFL551449 Branchiostoma floridae partial gene for homeobox protein AmphiTlx, exons 1-3 Length = 10535 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 tggagcagacttgttcatct 439 |||||||||||||||||||| Sbjct: 1849 tggagcagacttgttcatct 1868
>emb|BX664719.14| Zebrafish DNA sequence from clone DKEY-159I6 in linkage group 7, complete sequence Length = 181105 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 agtagcagtgcaacaaataa 346 |||||||||||||||||||| Sbjct: 62316 agtagcagtgcaacaaataa 62297
>gb|AC104113.3| Homo sapiens chromosome 5 clone RP11-231G3, complete sequence Length = 105743 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 actgaagtgttccttgtgtc 176 |||||||||||||||||||| Sbjct: 30629 actgaagtgttccttgtgtc 30648
>gb|AF458149.1|AF458149S1 Homo sapiens taste-specific G-protein coupled receptor T1R2 (TAS1R2) gene, exon 1 Length = 185 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ggagaagaggccacccagga 109 |||||||||||||||||||| Sbjct: 121 ggagaagaggccacccagga 102
>ref|NM_152232.1| Homo sapiens taste receptor, type 1, member 2 (TAS1R2), mRNA Length = 2521 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ggagaagaggccacccagga 109 |||||||||||||||||||| Sbjct: 121 ggagaagaggccacccagga 102
>gb|AC022445.6| Homo sapiens chromosome 5 clone RP11-489L13, complete sequence Length = 180807 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 actgaagtgttccttgtgtc 176 |||||||||||||||||||| Sbjct: 169729 actgaagtgttccttgtgtc 169748
>gb|AY129331.1| Mycobacteriophage CJW1, complete genome Length = 75931 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 tcggcaacctggtggagcag 427 |||||||||||||||||||| Sbjct: 32238 tcggcaacctggtggagcag 32257
>gb|AC011942.6|AC011942 Homo sapiens, clone RP11-16I13, complete sequence Length = 122538 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 498 tgaatttcaagaactaattt 517 |||||||||||||||||||| Sbjct: 16859 tgaatttcaagaactaattt 16878
>tpg|BK000151.1| TPA: TPA_exp: Homo sapiens G-protein coupled receptor (TAS1R2) mRNA, complete cds Length = 2520 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ggagaagaggccacccagga 109 |||||||||||||||||||| Sbjct: 120 ggagaagaggccacccagga 101
>gb|AC010739.3| Homo sapiens BAC clone RP11-478M12 from 2, complete sequence Length = 180226 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ctgaagtgttccttgtgtca 177 |||||||||||||||||||| Sbjct: 5274 ctgaagtgttccttgtgtca 5293
>gb|AC020547.7| Homo sapiens BAC clone RP11-134F3 from 2, complete sequence Length = 167739 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 504 tcaagaactaatttctgaattgcc 527 ||||||| |||||||||||||||| Sbjct: 160858 tcaagaagtaatttctgaattgcc 160835
>gb|AY105822.1| Zea mays PCO122996 mRNA sequence Length = 1660 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 gtatgctggatttgatacca 295 |||||||||||||||||||| Sbjct: 910 gtatgctggatttgatacca 891
>gb|AC153584.5| Mus musculus 6 BAC RP23-27C9 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 208921 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 aaggcagtagcagtgcaaca 341 |||||||||||||||||||| Sbjct: 141660 aaggcagtagcagtgcaaca 141641
>emb|BX248089.5| Zebrafish DNA sequence from clone DKEY-21K10 in linkage group 20, complete sequence Length = 247834 Score = 40.1 bits (20), Expect = 7.1 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 113 ctcctggaatc-gctgatttgattaaaa 139 ||||||||||| |||||||||||||||| Sbjct: 85855 ctcctggaatcagctgatttgattaaaa 85828
>dbj|AP006639.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT25N16, TM0216, complete sequence Length = 95667 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 493 gtctttgaatttcaagaactaatttctg 520 |||||||||||||||||| || |||||| Sbjct: 75639 gtctttgaatttcaagaattactttctg 75666 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,314,887 Number of Sequences: 3902068 Number of extensions: 4314887 Number of successful extensions: 75657 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 75492 Number of HSP's gapped (non-prelim): 155 length of query: 527 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 504 effective length of database: 17,143,297,704 effective search space: 8640222042816 effective search space used: 8640222042816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
