>gb|BT009646.1| Triticum aestivum clone wrsu1.pk0006.a3:fis, full insert mRNA
           sequence
          Length = 936

 Score =  281 bits (142), Expect = 8e-73
 Identities = 157/162 (96%)
 Strand = Plus / Minus

                                                                       
Query: 242 ccgacgccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatct 301
           ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 660 ccgacgccaacttacggcactacaccgacgccatcttacggcactacaccgacgccatct 601

                                                                       
Query: 302 tacggcactacaccgagcaccccaagtacaccttcccatgaagtccctgcaagtccaaag 361
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 600 tacggcactacaccgagcaccccaagtacaccttcccatgatgtccctgcaagtccaaag 541

                                                     
Query: 362 aagcatggattcattggatcctgcgacttctggaagaatcac 403
           |||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 540 aagcatgggttcattggatcctgcgactactggaagaatcac 499



 Score =  242 bits (122), Expect = 7e-61
 Identities = 154/165 (93%), Gaps = 6/165 (3%)
 Strand = Plus / Minus

                                                                       
Query: 153 cccactatgggggctcaccaactccctcgcatgggtcaggaggaggctacaacccgacac 212
           |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 767 cccactatgggggctcaccaactcccacgcatgggtcaggaggaggctacaatccgacac 708

                                                                       
Query: 213 cgacaccaacttacggtactacaccaacgccgacgccatcttacggcactacaccgacgc 272
           |||||||||||||||| ||||||      |||||||||||||||||||||||||||||||
Sbjct: 707 cgacaccaacttacggcactaca------ccgacgccatcttacggcactacaccgacgc 654

                                                        
Query: 273 catcttatggcactacaccgacgccatcttacggcactacaccga 317
           || |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 653 caacttacggcactacaccgacgccatcttacggcactacaccga 609



 Score =  198 bits (100), Expect = 1e-47
 Identities = 112/116 (96%)
 Strand = Plus / Minus

                                                                       
Query: 21  ctgcacatactgagagcaagatgggtggcaaggttcttctgatgagtgctgtcttggtgg 80
           ||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 881 ctgcacacactgagagcaagatgggtggcaaggttcttctgatcagtgccgtcttggtgg 822

                                                                   
Query: 81  ggcttgtttcactgagctcctgcaggagcctgggagagttgcatgagcagaagacc 136
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 821 ggcttgtttcactgagctcgtgcaggagcctgggagagttgcatgagcagaagacc 766

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  141 bits (71), Expect = 2e-30
 Identities = 123/139 (88%), Gaps = 1/139 (0%)
 Strand = Plus / Minus

                                                                           
Query: 13      tgtctactctgcacatactgagagc-aagatgggtggcaaggttcttctgatgagtgctg 71
               ||||| ||||||| ||||||||||| |||||| || |||||||||||||||| |||| ||
Sbjct: 7324237 tgtcttctctgcagatactgagagccaagatgagtagcaaggttcttctgatcagtggtg 7324178

                                                                           
Query: 72      tcttggtggggcttgtttcactgagctcctgcaggagcctgggagagttgcatgagcaga 131
               || ||||||||||  |||| |||||||| |||||||||||||||||||||  ||| ||||
Sbjct: 7324177 tcctggtggggctcctttctctgagctcatgcaggagcctgggagagttgtctgaacaga 7324118

                                  
Query: 132     agacctactcttcttctac 150
               |||||||||||||| ||||
Sbjct: 7324117 agacctactcttctactac 7324099



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                           
Query: 233     acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 292
               |||||||| || || ||| |||||||| ||||||| || |||||||||||||||||||| 
Sbjct: 7323735 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 7323676

                                      
Query: 293     acgccatcttacggcactacacc 315
               || ||||||||||||||||||||
Sbjct: 7323675 acaccatcttacggcactacacc 7323653



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                           
Query: 248     ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 307
               |||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 7323696 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 7323637

                                          
Query: 308     actacaccgagcaccccaagtacacct 334
               || ||||| |||||||| || ||||||
Sbjct: 7323636 acgacaccaagcacccccagcacacct 7323610



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 209     acaccgacaccaacttacggtactacaccaac 240
               ||||| |||||| ||||||| |||||||||||
Sbjct: 7323681 acaccaacaccatcttacggcactacaccaac 7323650

>gb|AY568677.1| Oryza sativa (japonica cultivar-group) proline- and threonine-rich
           protein mRNA, complete cds
          Length = 902

 Score =  141 bits (71), Expect = 2e-30
 Identities = 123/139 (88%), Gaps = 1/139 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tgtctactctgcacatactgagagc-aagatgggtggcaaggttcttctgatgagtgctg 71
           ||||| ||||||| ||||||||||| |||||| || |||||||||||||||| |||| ||
Sbjct: 36  tgtcttctctgcagatactgagagccaagatgagtagcaaggttcttctgatcagtggtg 95

                                                                       
Query: 72  tcttggtggggcttgtttcactgagctcctgcaggagcctgggagagttgcatgagcaga 131
           || ||||||||||  |||| |||||||| |||||||||||||||||||||  ||| ||||
Sbjct: 96  tcctggtggggctcctttctctgagctcatgcaggagcctgggagagttgtctgaacaga 155

                              
Query: 132 agacctactcttcttctac 150
           |||||||||||||| ||||
Sbjct: 156 agacctactcttctactac 174



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                       
Query: 233 acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 292
           |||||||| || || ||| |||||||| ||||||| || |||||||||||||||||||| 
Sbjct: 230 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 289

                                  
Query: 293 acgccatcttacggcactacacc 315
           || ||||||||||||||||||||
Sbjct: 290 acaccatcttacggcactacacc 312



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 76/87 (87%)
 Strand = Plus / Plus

                                                                       
Query: 248 ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 307
           |||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 269 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 328

                                      
Query: 308 actacaccgagcaccccaagtacacct 334
           || ||||| ||| |||| || ||||||
Sbjct: 329 acgacaccaagctcccccagcacacct 355



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 209 acaccgacaccaacttacggtactacaccaac 240
           ||||| |||||| ||||||| |||||||||||
Sbjct: 284 acaccaacaccatcttacggcactacaccaac 315

>dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBb0035N08
          Length = 136267

 Score =  141 bits (71), Expect = 2e-30
 Identities = 123/139 (88%), Gaps = 1/139 (0%)
 Strand = Plus / Minus

                                                                          
Query: 13     tgtctactctgcacatactgagagc-aagatgggtggcaaggttcttctgatgagtgctg 71
              ||||| ||||||| ||||||||||| |||||| || |||||||||||||||| |||| ||
Sbjct: 100045 tgtcttctctgcagatactgagagccaagatgagtagcaaggttcttctgatcagtggtg 99986

                                                                          
Query: 72     tcttggtggggcttgtttcactgagctcctgcaggagcctgggagagttgcatgagcaga 131
              || ||||||||||  |||| |||||||| |||||||||||||||||||||  ||| ||||
Sbjct: 99985  tcctggtggggctcctttctctgagctcatgcaggagcctgggagagttgtctgaacaga 99926

                                 
Query: 132    agacctactcttcttctac 150
              |||||||||||||| ||||
Sbjct: 99925  agacctactcttctactac 99907



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                         
Query: 233   acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 292
             |||||||| || || ||| |||||||| ||||||| || |||||||||||||||||||| 
Sbjct: 99543 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 99484

                                    
Query: 293   acgccatcttacggcactacacc 315
             || ||||||||||||||||||||
Sbjct: 99483 acaccatcttacggcactacacc 99461



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                         
Query: 248   ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 307
             |||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 99504 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 99445

                                        
Query: 308   actacaccgagcaccccaagtacacct 334
             || ||||| |||||||| || ||||||
Sbjct: 99444 acgacaccaagcacccccagcacacct 99418



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 209   acaccgacaccaacttacggtactacaccaac 240
             ||||| |||||| ||||||| |||||||||||
Sbjct: 99489 acaccaacaccatcttacggcactacaccaac 99458

>ref|XM_464784.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 660

 Score =  117 bits (59), Expect = 3e-23
 Identities = 92/103 (89%)
 Strand = Plus / Plus

                                                                       
Query: 48  gcaaggttcttctgatgagtgctgtcttggtggggcttgtttcactgagctcctgcagga 107
           |||||||||||||||| |||| |||| ||||||||||  |||| |||||||| |||||||
Sbjct: 8   gcaaggttcttctgatcagtggtgtcctggtggggctcctttctctgagctcatgcagga 67

                                                      
Query: 108 gcctgggagagttgcatgagcagaagacctactcttcttctac 150
           ||||||||||||||  ||| |||||||||||||||||| ||||
Sbjct: 68  gcctgggagagttgtctgaacagaagacctactcttctactac 110



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 77/87 (88%)
 Strand = Plus / Plus

                                                                       
Query: 248 ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 307
           |||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 205 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 264

                                      
Query: 308 actacaccgagcaccccaagtacacct 334
           || ||||| |||||||| || ||||||
Sbjct: 265 acgacaccaagcacccccagcacacct 291



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                       
Query: 233 acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 292
           |||||||| || || ||| |||||||| ||||||| || |||||||||||||||||||| 
Sbjct: 166 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 225

                                  
Query: 293 acgccatcttacggcactacacc 315
           || ||||||||||||||||||||
Sbjct: 226 acaccatcttacggcactacacc 248



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 209 acaccgacaccaacttacggtactacaccaac 240
           ||||| |||||| ||||||| |||||||||||
Sbjct: 220 acaccaacaccatcttacggcactacaccaac 251

>gb|AC010242.7| Homo sapiens chromosome 5 clone CTC-359E10, complete sequence
          Length = 174293

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 355   tccaaagaagcatggattcattg 377
             |||||||||||||||||||||||
Sbjct: 29024 tccaaagaagcatggattcattg 29046

>gb|AC008816.8| Homo sapiens chromosome 5 clone CTD-2122K17, complete sequence
          Length = 174293

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 355   tccaaagaagcatggattcattg 377
             |||||||||||||||||||||||
Sbjct: 29024 tccaaagaagcatggattcattg 29046

>gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, complete sequence
          Length = 133790

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 355   tccaaagaagcatggattcattg 377
             |||||||||||||||||||||||
Sbjct: 43691 tccaaagaagcatggattcattg 43669

>gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5, complete sequence
          Length = 203043

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 355   tccaaagaagcatggattcattg 377
             |||||||||||||||||||||||
Sbjct: 91385 tccaaagaagcatggattcattg 91407

>gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, complete sequence
          Length = 256158

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 331    accttcccatgaagtccctgc 351
              |||||||||||||||||||||
Sbjct: 115173 accttcccatgaagtccctgc 115193

>gb|AY582740.1| Chlamydomonas reinhardtii Fe-hydrogenase assembly protein (HydG)
           mRNA, complete cds
          Length = 1704

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 315 cgagcaccccaagtacacctt 335
           |||||||||||||||||||||
Sbjct: 675 cgagcaccccaagtacacctt 695

>gb|AC156980.9| Mus musculus chromosome 1, clone RP23-191A12, complete sequence
          Length = 224673

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 42     tgggtggcaaggttcttctgatgag 66
              ||||||||||||||| |||||||||
Sbjct: 168930 tgggtggcaaggttcatctgatgag 168954

>gb|AC137970.10| Mus musculus chromosome 3, clone RP23-438E13, complete sequence
          Length = 212827

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      ctgttgtctactctgcacat 28
              ||||||||||||||||||||
Sbjct: 177039 ctgttgtctactctgcacat 177020

>gb|AC115865.9| Mus musculus chromosome 3, clone RP24-314I8, complete sequence
          Length = 200362

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     ctgttgtctactctgcacat 28
             ||||||||||||||||||||
Sbjct: 81167 ctgttgtctactctgcacat 81148

>gb|AC145959.3| Gallus gallus chromosome UNK clone CH261-17M10, complete sequence
          Length = 183075

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     tgcttattctgttgtctact 20
             ||||||||||||||||||||
Sbjct: 86325 tgcttattctgttgtctact 86344

>gb|AC011558.6| Homo sapiens chromosome 19 clone LLNLR-291F12, complete sequence
          Length = 43128

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    ctcctgcaggagcctgggag 116
             ||||||||||||||||||||
Sbjct: 42852 ctcctgcaggagcctgggag 42833

>gb|AC148763.14| Medicago truncatula clone mth2-29o24, complete sequence
          Length = 104879

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   aacccgacaccgacaccaac 222
             ||||||||||||||||||||
Sbjct: 15886 aacccgacaccgacaccaac 15867

>gb|AC093066.2| Homo sapiens chromosome 19 clone LLNLR-237C1, complete sequence
          Length = 5054

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 97   ctcctgcaggagcctgggag 116
            ||||||||||||||||||||
Sbjct: 1337 ctcctgcaggagcctgggag 1318

>gb|AC093597.3| Homo sapiens BAC clone RP11-187O17 from 4, complete sequence
          Length = 17211

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 331   accttcccatgaagtccctg 350
             ||||||||||||||||||||
Sbjct: 10846 accttcccatgaagtccctg 10827

>gb|AF142686.1| Cyclolobium nutans maturase-like protein (matK) gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 2503

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 357 caaagaagcatggattcattggat 380
           |||||||||| |||||||||||||
Sbjct: 701 caaagaagcagggattcattggat 678

>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 359     aagaagcatggattcattgg 378
               ||||||||||||||||||||
Sbjct: 2827466 aagaagcatggattcattgg 2827485

>emb|AJ342722.1|HSA342722 Homo sapiens genomic sequence surrounding NotI site, clone NR1-JG2R
          Length = 788

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 97  ctcctgcaggagcctgggag 116
           ||||||||||||||||||||
Sbjct: 467 ctcctgcaggagcctgggag 448


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,845,399
Number of Sequences: 3902068
Number of extensions: 2845399
Number of successful extensions: 52349
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52266
Number of HSP's gapped (non-prelim): 65
length of query: 403
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 381
effective length of database: 17,147,199,772
effective search space: 6533083113132
effective search space used: 6533083113132
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)