ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd24k06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 192 bits (97), Expect = 3e-46 Identities = 192/222 (86%), Gaps = 2/222 (0%) Strand = Plus / Minus Query: 8 gatgaggaacctatggctgaaaacaacccaaggggtcttccactgtcgactgatggggaa 67 |||||||||||||||||| ||||||||||||| || |||||| ||||||||||||| ||| Sbjct: 13445935 gatgaggaacctatggctaaaaacaacccaagagggcttccagtgtcgactgatggagaa 13445876 Query: 68 ggcatgaagagggggacacgtgtaggggaaggcgcactaagggaagttgcggnttatatt 127 ||||||||||||||||||| |||||||||||| ||| | ||||||||||| | ||||||| Sbjct: 13445875 ggcatgaagagggggacacttgtaggggaaggtgcatttagggaagttgctgcttatatt 13445816 Query: 128 ctcgaccatccagtcggcgatcgtgaatcag-gtcacggntctgggttttctggngtgcc 186 || ||||||||| | || |||| |||||| | ||| || ||||| ||||| ||||| Sbjct: 13445815 cttgaccatccaattggtgatcatgaatctgaagaacgtatc-gggttctctggtgtgcc 13445757 Query: 187 tcccacagcattagtccgaagcttacataggggaaagagctt 228 |||||||||||| ||||| |||||||| ||||| |||||||| Sbjct: 13445756 tcccacagcattggtccggagcttacacagggggaagagctt 13445715
>dbj|AP003952.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1294_G12 Length = 121979 Score = 192 bits (97), Expect = 3e-46 Identities = 192/222 (86%), Gaps = 2/222 (0%) Strand = Plus / Minus Query: 8 gatgaggaacctatggctgaaaacaacccaaggggtcttccactgtcgactgatggggaa 67 |||||||||||||||||| ||||||||||||| || |||||| ||||||||||||| ||| Sbjct: 107367 gatgaggaacctatggctaaaaacaacccaagagggcttccagtgtcgactgatggagaa 107308 Query: 68 ggcatgaagagggggacacgtgtaggggaaggcgcactaagggaagttgcggnttatatt 127 ||||||||||||||||||| |||||||||||| ||| | ||||||||||| | ||||||| Sbjct: 107307 ggcatgaagagggggacacttgtaggggaaggtgcatttagggaagttgctgcttatatt 107248 Query: 128 ctcgaccatccagtcggcgatcgtgaatcag-gtcacggntctgggttttctggngtgcc 186 || ||||||||| | || |||| |||||| | ||| || ||||| ||||| ||||| Sbjct: 107247 cttgaccatccaattggtgatcatgaatctgaagaacgtatc-gggttctctggtgtgcc 107189 Query: 187 tcccacagcattagtccgaagcttacataggggaaagagctt 228 |||||||||||| ||||| |||||||| ||||| |||||||| Sbjct: 107188 tcccacagcattggtccggagcttacacagggggaagagctt 107147
>dbj|AP003506.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0428A03 Length = 136799 Score = 192 bits (97), Expect = 3e-46 Identities = 192/222 (86%), Gaps = 2/222 (0%) Strand = Plus / Minus Query: 8 gatgaggaacctatggctgaaaacaacccaaggggtcttccactgtcgactgatggggaa 67 |||||||||||||||||| ||||||||||||| || |||||| ||||||||||||| ||| Sbjct: 57359 gatgaggaacctatggctaaaaacaacccaagagggcttccagtgtcgactgatggagaa 57300 Query: 68 ggcatgaagagggggacacgtgtaggggaaggcgcactaagggaagttgcggnttatatt 127 ||||||||||||||||||| |||||||||||| ||| | ||||||||||| | ||||||| Sbjct: 57299 ggcatgaagagggggacacttgtaggggaaggtgcatttagggaagttgctgcttatatt 57240 Query: 128 ctcgaccatccagtcggcgatcgtgaatcag-gtcacggntctgggttttctggngtgcc 186 || ||||||||| | || |||| |||||| | ||| || ||||| ||||| ||||| Sbjct: 57239 cttgaccatccaattggtgatcatgaatctgaagaacgtatc-gggttctctggtgtgcc 57181 Query: 187 tcccacagcattagtccgaagcttacataggggaaagagctt 228 |||||||||||| ||||| |||||||| ||||| |||||||| Sbjct: 57180 tcccacagcattggtccggagcttacacagggggaagagctt 57139
>dbj|AK065176.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002D10, full insert sequence Length = 2389 Score = 192 bits (97), Expect = 3e-46 Identities = 192/222 (86%), Gaps = 2/222 (0%) Strand = Plus / Plus Query: 8 gatgaggaacctatggctgaaaacaacccaaggggtcttccactgtcgactgatggggaa 67 |||||||||||||||||| ||||||||||||| || |||||| ||||||||||||| ||| Sbjct: 1413 gatgaggaacctatggctaaaaacaacccaagagggcttccagtgtcgactgatggagaa 1472 Query: 68 ggcatgaagagggggacacgtgtaggggaaggcgcactaagggaagttgcggnttatatt 127 ||||||||||||||||||| |||||||||||| ||| | ||||||||||| | ||||||| Sbjct: 1473 ggcatgaagagggggacacttgtaggggaaggtgcatttagggaagttgctgcttatatt 1532 Query: 128 ctcgaccatccagtcggcgatcgtgaatcag-gtcacggntctgggttttctggngtgcc 186 || ||||||||| | || |||| |||||| | ||| || ||||| ||||| ||||| Sbjct: 1533 cttgaccatccaattggtgatcatgaatctgaagaacgtatc-gggttctctggtgtgcc 1591 Query: 187 tcccacagcattagtccgaagcttacataggggaaagagctt 228 |||||||||||| ||||| |||||||| ||||| |||||||| Sbjct: 1592 tcccacagcattggtccggagcttacacagggggaagagctt 1633
>dbj|AK100224.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047L02, full insert sequence Length = 2490 Score = 184 bits (93), Expect = 8e-44 Identities = 191/222 (86%), Gaps = 2/222 (0%) Strand = Plus / Plus Query: 8 gatgaggaacctatggctgaaaacaacccaaggggtcttccactgtcgactgatggggaa 67 |||||||||||||||||| ||||||||||||| || |||||| ||||||||||||| ||| Sbjct: 1435 gatgaggaacctatggctaaaaacaacccaagagggcttccagtgtcgactgatggagaa 1494 Query: 68 ggcatgaagagggggacacgtgtaggggaaggcgcactaagggaagttgcggnttatatt 127 ||||||||||||||||| | |||||||||||| ||| | ||||||||||| | ||||||| Sbjct: 1495 ggcatgaagagggggacgcttgtaggggaaggtgcatttagggaagttgctgcttatatt 1554 Query: 128 ctcgaccatccagtcggcgatcgtgaatcag-gtcacggntctgggttttctggngtgcc 186 || ||||||||| | || |||| |||||| | ||| || ||||| ||||| ||||| Sbjct: 1555 cttgaccatccaattggtgatcatgaatctgaagaacgtatc-gggttctctggtgtgcc 1613 Query: 187 tcccacagcattagtccgaagcttacataggggaaagagctt 228 |||||||||||| ||||| |||||||| ||||| |||||||| Sbjct: 1614 tcccacagcattggtccggagcttacacagggggaagagctt 1655
>gb|BT024182.1| Zea mays clone EL01N0414H08 mRNA sequence Length = 1514 Score = 157 bits (79), Expect = 2e-35 Identities = 184/220 (83%) Strand = Plus / Plus Query: 5 attgatgaggaacctatggctgaaaacaacccaaggggtcttccactgtcgactgatggg 64 |||||||||||||| ||||| |||||||||||||||||||||| |||| |||||||| Sbjct: 490 attgatgaggaacccatggccaaaaacaacccaaggggtcttcctttgtccactgatggc 549 Query: 65 gaaggcatgaagagggggacacgtgtaggggaaggcgcactaagggaagttgcggnttat 124 || || ||||||||||| ||| |||||||| ||| ||| | ||||| ||||| | |||| Sbjct: 550 gaggggatgaagaggggaacaattgtagggggaggtgcattcagggaggttgcagcttat 609 Query: 125 attctcgaccatccagtcggcgatcgtgaatcaggtcacggntctgggttttctggngtg 184 ||||||||||||||||| | ||| || |||| |||||| | | |||||||||||| ||| Sbjct: 610 attctcgaccatccagttagtgatagtaaatctggtcacagttttgggttttctggtgtg 669 Query: 185 cctcccacagcattagtccgaagcttacataggggaaaga 224 |||||||| |||| ||||||| || |||||||| |||| Sbjct: 670 cctcccaccacattggtccgaacctcgcatagggggaaga 709
>ref|XM_465025.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2621 Score = 67.9 bits (34), Expect = 1e-08 Identities = 111/137 (81%) Strand = Plus / Plus Query: 5 attgatgaggaacctatggctgaaaacaacccaaggggtcttccactgtcgactgatggg 64 |||||||||||||| ||||| | || || || ||||| ||||| |||| |||||||| Sbjct: 1459 attgatgaggaaccaatggcaaagaataatcccaggggccttcctttgtcaactgatggt 1518 Query: 65 gaaggcatgaagagggggacacgtgtaggggaaggcgcactaagggaagttgcggnttat 124 || || |||| ||||| || || ||||||||||| ||| ||||||| ||||| | ||| Sbjct: 1519 gaggggttgaaaaggggaacgcgagtaggggaaggtgcattaagggaggttgcagcatat 1578 Query: 125 attctcgaccatccagt 141 ||||| ||||||||||| Sbjct: 1579 attcttgaccatccagt 1595
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 67.9 bits (34), Expect = 1e-08 Identities = 111/137 (81%) Strand = Plus / Minus Query: 5 attgatgaggaacctatggctgaaaacaacccaaggggtcttccactgtcgactgatggg 64 |||||||||||||| ||||| | || || || ||||| ||||| |||| |||||||| Sbjct: 10994877 attgatgaggaaccaatggcaaagaataatcccaggggccttcctttgtcaactgatggt 10994818 Query: 65 gaaggcatgaagagggggacacgtgtaggggaaggcgcactaagggaagttgcggnttat 124 || || |||| ||||| || || ||||||||||| ||| ||||||| ||||| | ||| Sbjct: 10994817 gaggggttgaaaaggggaacgcgagtaggggaaggtgcattaagggaggttgcagcatat 10994758 Query: 125 attctcgaccatccagt 141 ||||| ||||||||||| Sbjct: 10994757 attcttgaccatccagt 10994741
>dbj|AP004212.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1086_G08 Length = 59883 Score = 67.9 bits (34), Expect = 1e-08 Identities = 111/137 (81%) Strand = Plus / Minus Query: 5 attgatgaggaacctatggctgaaaacaacccaaggggtcttccactgtcgactgatggg 64 |||||||||||||| ||||| | || || || ||||| ||||| |||| |||||||| Sbjct: 21540 attgatgaggaaccaatggcaaagaataatcccaggggccttcctttgtcaactgatggt 21481 Query: 65 gaaggcatgaagagggggacacgtgtaggggaaggcgcactaagggaagttgcggnttat 124 || || |||| ||||| || || ||||||||||| ||| ||||||| ||||| | ||| Sbjct: 21480 gaggggttgaaaaggggaacgcgagtaggggaaggtgcattaagggaggttgcagcatat 21421 Query: 125 attctcgaccatccagt 141 ||||| ||||||||||| Sbjct: 21420 attcttgaccatccagt 21404
>dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1756_H07 Length = 217205 Score = 67.9 bits (34), Expect = 1e-08 Identities = 111/137 (81%) Strand = Plus / Minus Query: 5 attgatgaggaacctatggctgaaaacaacccaaggggtcttccactgtcgactgatggg 64 |||||||||||||| ||||| | || || || ||||| ||||| |||| |||||||| Sbjct: 201076 attgatgaggaaccaatggcaaagaataatcccaggggccttcctttgtcaactgatggt 201017 Query: 65 gaaggcatgaagagggggacacgtgtaggggaaggcgcactaagggaagttgcggnttat 124 || || |||| ||||| || || ||||||||||| ||| ||||||| ||||| | ||| Sbjct: 201016 gaggggttgaaaaggggaacgcgagtaggggaaggtgcattaagggaggttgcagcatat 200957 Query: 125 attctcgaccatccagt 141 ||||| ||||||||||| Sbjct: 200956 attcttgaccatccagt 200940
>dbj|AK065628.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027K22, full insert sequence Length = 2621 Score = 67.9 bits (34), Expect = 1e-08 Identities = 111/137 (81%) Strand = Plus / Plus Query: 5 attgatgaggaacctatggctgaaaacaacccaaggggtcttccactgtcgactgatggg 64 |||||||||||||| ||||| | || || || ||||| ||||| |||| |||||||| Sbjct: 1459 attgatgaggaaccaatggcaaagaataatcccaggggccttcctttgtcaactgatggt 1518 Query: 65 gaaggcatgaagagggggacacgtgtaggggaaggcgcactaagggaagttgcggnttat 124 || || |||| ||||| || || ||||||||||| ||| ||||||| ||||| | ||| Sbjct: 1519 gaggggttgaaaaggggaacgcgagtaggggaaggtgcattaagggaggttgcagcatat 1578 Query: 125 attctcgaccatccagt 141 ||||| ||||||||||| Sbjct: 1579 attcttgaccatccagt 1595
>dbj|AK061705.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-E06, full insert sequence Length = 1204 Score = 67.9 bits (34), Expect = 1e-08 Identities = 111/137 (81%) Strand = Plus / Plus Query: 5 attgatgaggaacctatggctgaaaacaacccaaggggtcttccactgtcgactgatggg 64 |||||||||||||| ||||| | || || || ||||| ||||| |||| |||||||| Sbjct: 42 attgatgaggaaccaatggcaaagaataatcccaggggccttcctttgtcaactgatggt 101 Query: 65 gaaggcatgaagagggggacacgtgtaggggaaggcgcactaagggaagttgcggnttat 124 || || |||| ||||| || || ||||||||||| ||| ||||||| ||||| | ||| Sbjct: 102 gaggggttgaaaaggggaacgcgagtaggggaaggtgcattaagggaggttgcagcatat 161 Query: 125 attctcgaccatccagt 141 ||||| ||||||||||| Sbjct: 162 attcttgaccatccagt 178
>gb|AC154038.1| Mus musculus 6 BAC RP23-49L8 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 213878 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 cttacataggggaaagagctt 228 ||||||||||||||||||||| Sbjct: 169182 cttacataggggaaagagctt 169162
>gb|AC153860.4| Mus musculus 6 BAC RP23-170C11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 213719 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Plus Query: 208 cttacataggggaaagagctt 228 ||||||||||||||||||||| Sbjct: 183567 cttacataggggaaagagctt 183587
>ref|NM_001032589.1| Takifugu rubripes warm-temperature-acclimation-related-65kDa- protein-like-protein (Wap65-2), mRNA Length = 1518 Score = 40.1 bits (20), Expect = 2.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 44 cttccactgtcgactgatggggaaggcatgaa 75 ||||||||| ||| |||| ||||||||||||| Sbjct: 919 cttccactgccgagtgatcgggaaggcatgaa 888
>dbj|AB125933.1| Takifugu rubripes Wap65-2 mRNA for warm-temperature-acclimation-related-65kDa-protein-like- protein, complete cds Length = 1518 Score = 40.1 bits (20), Expect = 2.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 44 cttccactgtcgactgatggggaaggcatgaa 75 ||||||||| ||| |||| ||||||||||||| Sbjct: 919 cttccactgccgagtgatcgggaaggcatgaa 888
>emb|AJ544617.1|TRU544617 Takifugu rubripes dmd gene for putative dystrophin, exons 74-82 Length = 17490 Score = 40.1 bits (20), Expect = 2.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 44 cttccactgtcgactgatggggaaggcatgaa 75 ||||||||| ||| |||| ||||||||||||| Sbjct: 15564 cttccactgccgagtgatcgggaaggcatgaa 15595 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,269,652 Number of Sequences: 3902068 Number of extensions: 1269652 Number of successful extensions: 20639 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20609 Number of HSP's gapped (non-prelim): 30 length of query: 228 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 206 effective length of database: 17,147,199,772 effective search space: 3532323153032 effective search space used: 3532323153032 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
