>RECQ4_HUMAN (O94761) ATP-dependent DNA helicase Q4 (EC 3.6.1.-) (RecQ|
           protein-like 4) (RecQ4) (RTS)
          Length = 1208

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = -3

Query: 241 HWQTSLPASSGELAPTW*ICQPCHSPADAPLGVPRGC 131
           H Q SL    G L P W   Q CHS     LG P+ C
Sbjct: 174 HLQASLSQRLGSLDPGW--LQRCHSEVPDFLGAPKAC 208

>TNNI_PONLE (P05547) Troponin I (TnI)|
          Length = 201

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 145 LQEVHLQVSDKAGKFTRSALARLTKQARKFA 237
           + E+++QV+D  GKF +  L +++K   KFA
Sbjct: 126 INELNIQVNDLRGKFIKPTLKKVSKYENKFA 156

>TNNI_DROME (P36188) Troponin I (Tn I) (Protein wings apart-A) (Protein heldup)|
          Length = 268

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 145 LQEVHLQVSDKAGKFTRSALARLTKQARKFA 237
           + +++ QV+D  GKF + AL +++K   KFA
Sbjct: 184 INDLNAQVNDLRGKFVKPALKKVSKYENKFA 214

>NOP58_YEAST (Q12499) Nucleolar protein NOP58 (Nucleolar protein NOP5)|
          Length = 511

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 16/75 (21%), Positives = 38/75 (50%)
 Frame = -2

Query: 239 LANFLACFVRRASADLVNLPALSLTCRCTSWSPTRLSMPKTPSSTLKLISSRSTTGMAFS 60
           L+N+L+  ++  + +L  L    +  R  + S + +S+ K+P+ST++++ +      A  
Sbjct: 272 LSNYLSARMKAIAPNLTQLVGELVGARLIAHSGSLISLAKSPASTIQILGAEKALFRALK 331

Query: 59  EKISRGRTGVAKRSS 15
            K    + G+   +S
Sbjct: 332 TKHDTPKYGLLYHAS 346

>BGAL_STAXY (O33815) Beta-galactosidase (EC 3.2.1.23) (Lactase)|
          Length = 994

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -2

Query: 392 YKQNEIVG*TSNKYSSMNTTLI*SDWYKFTYF-SFESHFNPS*YSSTTTL 246
           Y+Q E       +Y++ N TL+  +WY F YF S E++ N S    + TL
Sbjct: 27  YQQGEADYHFETRYNTRNATLLNGEWY-FQYFESLEAYLNHSNKQESKTL 75

>CT078_HUMAN (Q9BR46) Hypothetical protein C20orf78|
          Length = 151

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 292 LNLILTRRSTHQLLPWAHWQ 233
           L+L+LTR+   Q L W+HWQ
Sbjct: 71  LDLLLTRKKRSQGLHWSHWQ 90

>BRR2_YEAST (P32639) Pre-mRNA-splicing helicase BRR2 (EC 3.6.1.-) (Protein|
            Snu246)
          Length = 2163

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 320  DWYKFTYFSFESHFNPS*YS-STTTLGALANFLACFVRRASADLV 189
            DW+ ++YF    H NPS Y    T+   ++ FL+  V     DLV
Sbjct: 1771 DWFTYSYFYRRIHVNPSYYGVRDTSPHGISVFLSNLVETCLNDLV 1815

>TUS1_YEAST (Q06412) Rho1 guanine nucleotide exchange factor TUS1 (TOR unique|
            function suppressor protein 1)
          Length = 1307

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 384  LLVPA*LNDNDAVRYLV*PHFNCAPFR 464
            +++P+ LND D + +L  PH N  PF+
Sbjct: 1127 IVLPSFLNDKDMMAHLRHPHLNSLPFK 1153

>MPP5_PONPY (Q5RDQ2) MAGUK p55 subfamily member 5|
          Length = 675

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 135 VVHAEDTFQHLETHLKPLHHRHG 67
           + +A+D  Q ++T LKP+HH+ G
Sbjct: 183 ISNAQDLAQEVQTVLKPVHHKEG 205

>MPP5_HUMAN (Q8N3R9) MAGUK p55 subfamily member 5|
          Length = 675

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 135 VVHAEDTFQHLETHLKPLHHRHG 67
           + +A+D  Q ++T LKP+HH+ G
Sbjct: 183 ISNAQDLAQEVQTVLKPVHHKEG 205

>MD1L1_CRIGR (Q80YF0) Mitotic spindle assembly checkpoint protein MAD1 (Mitotic|
           arrest deficient-like protein 1) (MAD1-like 1)
          Length = 717

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -1

Query: 183 ASLVTHLQMHLLESHEVVHAEDTFQHLETHLKPLHHRHGLLREDQQG-QDRCGEAEQLQ 10
           A++V +++  LL    +       +   THL+ +   +GLL E+ +G Q + G  E++Q
Sbjct: 239 AAVVKNMKSELLRLPRMERELKRLREENTHLREMKETNGLLTEELEGLQRKLGRQEKMQ 297

>GLMU_RALSO (Q8Y304) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 455

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +1

Query: 97  SFKVLEGVFGMDNLVGLQEVHLQVSDKAGKFTRSALARLTK-QARKFANAPRVVVDEYYD 273
           +   L G  G D+L G+  VHL      G+  R A  R+T+   +K AN  ++ + E   
Sbjct: 108 TLNALVGAAGQDHL-GVLTVHLDDPTGYGRIVRDATGRITRIVEQKDANETQLAIHEVNT 166

Query: 274 GL 279
           G+
Sbjct: 167 GI 168


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,895,916
Number of Sequences: 219361
Number of extensions: 1282348
Number of successful extensions: 3606
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3603
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)