| Clone Name | basd24j18 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme... | 96 | 3e-20 | 2 | DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme... | 60 | 2e-09 | 3 | DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme... | 57 | 8e-09 | 4 | SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog | 29 | 3.1 | 5 | Y8K9_VACCV (P07608) Hypothetical 8.9 kDa protein | 27 | 9.1 | 6 | MQO_WIGBR (Q8D1V2) Probable malate:quinone oxidoreductase (EC 1.... | 27 | 9.1 |
|---|
>DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 393 Score = 95.5 bits (236), Expect = 3e-20 Identities = 50/59 (84%), Positives = 53/59 (89%), Gaps = 2/59 (3%) Frame = +1 Query: 4 AXEXVAVSAGSPRSVFHCFEGENVESGHPLVKEGKLANLLAWRAEEDSLEE--GAVLCE 174 A E +AVSAGSPRSVFHCFE NVESGHPLVKEGKLANLLAWRAEE+SLEE GA+LCE Sbjct: 337 ANEELAVSAGSPRSVFHCFE--NVESGHPLVKEGKLANLLAWRAEEESLEEGTGALLCE 393
>DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 400 Score = 59.7 bits (143), Expect = 2e-09 Identities = 29/46 (63%), Positives = 35/46 (76%), Gaps = 1/46 (2%) Frame = +1 Query: 28 AGSPRSVFHCFEGENVESG-HPLVKEGKLANLLAWRAEEDSLEEGA 162 A SP+SVFHCF+GENVES P+ K+ KLANLL W E D++EE A Sbjct: 350 ATSPKSVFHCFDGENVESAPPPMKKDYKLANLLCWEEEADAMEEKA 395
>DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 398 Score = 57.4 bits (137), Expect = 8e-09 Identities = 31/51 (60%), Positives = 36/51 (70%) Frame = +1 Query: 4 AXEXVAVSAGSPRSVFHCFEGENVESGHPLVKEGKLANLLAWRAEEDSLEE 156 A E V V+ GSP+SV HCFE EN+ + P VKEGKL NLL W ED+LEE Sbjct: 344 ATEDVPVAVGSPKSVLHCFEAENMVNPAP-VKEGKLGNLLPW--GEDALEE 391
>SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog| Length = 713 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +1 Query: 25 SAGSPRSVFHCFEGENVESGHPLVKEGKLANLLAWRAEEDSLEEGAV 165 +AGSP S G P+ + N+ +W A +DS+ EGAV Sbjct: 260 NAGSPNSS---------TPGSPVASVARQKNISSWLASQDSVPEGAV 297
>Y8K9_VACCV (P07608) Hypothetical 8.9 kDa protein| Length = 76 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -2 Query: 374 KKCLFISCDRFSPNSTLIVADAANHLELIVYSE 276 K+C F D N T I+A+ NH+ I+YS+ Sbjct: 15 KRCSFACAD----NLTTILAEDGNHIRAILYSQ 43
>MQO_WIGBR (Q8D1V2) Probable malate:quinone oxidoreductase (EC 1.1.99.16)| (Malate dehydrogenase [acceptor]) (MQO) Length = 510 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +1 Query: 292 SSRWFAASATMSVLFGENLSQLINKHFFYLKK 387 SS + MS ++GEN + K FFYLK+ Sbjct: 123 SSSFINTVPHMSFVWGENNINFLKKRFFYLKQ 154 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,516,887 Number of Sequences: 219361 Number of extensions: 734040 Number of successful extensions: 2238 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 2212 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2235 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)