ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd24j18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme... 96 3e-20
2DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme... 60 2e-09
3DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme... 57 8e-09
4SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog 29 3.1
5Y8K9_VACCV (P07608) Hypothetical 8.9 kDa protein 27 9.1
6MQO_WIGBR (Q8D1V2) Probable malate:quinone oxidoreductase (EC 1.... 27 9.1

>DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 393

 Score = 95.5 bits (236), Expect = 3e-20
 Identities = 50/59 (84%), Positives = 53/59 (89%), Gaps = 2/59 (3%)
 Frame = +1

Query: 4   AXEXVAVSAGSPRSVFHCFEGENVESGHPLVKEGKLANLLAWRAEEDSLEE--GAVLCE 174
           A E +AVSAGSPRSVFHCFE  NVESGHPLVKEGKLANLLAWRAEE+SLEE  GA+LCE
Sbjct: 337 ANEELAVSAGSPRSVFHCFE--NVESGHPLVKEGKLANLLAWRAEEESLEEGTGALLCE 393



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>DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 400

 Score = 59.7 bits (143), Expect = 2e-09
 Identities = 29/46 (63%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
 Frame = +1

Query: 28  AGSPRSVFHCFEGENVESG-HPLVKEGKLANLLAWRAEEDSLEEGA 162
           A SP+SVFHCF+GENVES   P+ K+ KLANLL W  E D++EE A
Sbjct: 350 ATSPKSVFHCFDGENVESAPPPMKKDYKLANLLCWEEEADAMEEKA 395



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>DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 398

 Score = 57.4 bits (137), Expect = 8e-09
 Identities = 31/51 (60%), Positives = 36/51 (70%)
 Frame = +1

Query: 4   AXEXVAVSAGSPRSVFHCFEGENVESGHPLVKEGKLANLLAWRAEEDSLEE 156
           A E V V+ GSP+SV HCFE EN+ +  P VKEGKL NLL W   ED+LEE
Sbjct: 344 ATEDVPVAVGSPKSVLHCFEAENMVNPAP-VKEGKLGNLLPW--GEDALEE 391



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>SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog|
          Length = 713

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 25  SAGSPRSVFHCFEGENVESGHPLVKEGKLANLLAWRAEEDSLEEGAV 165
           +AGSP S            G P+    +  N+ +W A +DS+ EGAV
Sbjct: 260 NAGSPNSS---------TPGSPVASVARQKNISSWLASQDSVPEGAV 297



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>Y8K9_VACCV (P07608) Hypothetical 8.9 kDa protein|
          Length = 76

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 374 KKCLFISCDRFSPNSTLIVADAANHLELIVYSE 276
           K+C F   D    N T I+A+  NH+  I+YS+
Sbjct: 15  KRCSFACAD----NLTTILAEDGNHIRAILYSQ 43



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>MQO_WIGBR (Q8D1V2) Probable malate:quinone oxidoreductase (EC 1.1.99.16)|
           (Malate dehydrogenase [acceptor]) (MQO)
          Length = 510

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 292 SSRWFAASATMSVLFGENLSQLINKHFFYLKK 387
           SS +      MS ++GEN    + K FFYLK+
Sbjct: 123 SSSFINTVPHMSFVWGENNINFLKKRFFYLKQ 154


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,516,887
Number of Sequences: 219361
Number of extensions: 734040
Number of successful extensions: 2238
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2235
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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