ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd24j18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X83881.1|HCTTSAMDC H.chilense x T.turgidum conv. durum (Trit... 440 e-120
2gb|AF117660.1|AF117660 Triticum aestivum S-adenosylmethionine de... 359 4e-96
3emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 56 9e-05
4emb|Y07766.2|OSSADMEDC O.sativa mRNA for S-adenosylmethionine de... 56 9e-05
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
6gb|AF067194.1|AF067194 Oryza sativa S-adenosylmethionine decarbo... 56 9e-05
7dbj|AK100589.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
8dbj|AK098918.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
9dbj|AK072162.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
10dbj|AK067166.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
11dbj|AK062001.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
12emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 56 9e-05
13emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4,... 56 9e-05
14gb|BT016840.1| Zea mays clone Contig673 mRNA sequence 48 0.021
15emb|Y07767.1|ZMSADMEDC Z.mays mRNA for S-adenosylmethionine deca... 48 0.021
16gb|AY103590.1| Zea mays PCO098412 mRNA sequence 48 0.021
17dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.084
18dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.084
19dbj|AB122089.1| Oryza sativa (japonica cultivar-group) SAMDC1 g... 46 0.084
20dbj|AK102445.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.084
21dbj|AK101535.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.084
22dbj|AK100397.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.084
23dbj|AK067682.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.084
24gb|AY032614.1| Triticum aestivum receptor-like kinase (Wrlk-S3-9... 44 0.33
25gb|AF325197.1|AF325197 Triticum aestivum LRK33 (Lrk33) and TAK33... 44 0.33
26gb|AF325196.1|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (L... 44 0.33
27emb|CR847994.10| Zebrafish DNA sequence from clone CH211-203H15 ... 44 0.33
28gb|AC125203.3| Mus musculus BAC clone RP23-233M21 from 19, compl... 42 1.3
29emb|AL591979.1| Listeria monocytogenes strain EGD, complete geno... 42 1.3
30dbj|AB023064.1| Listeria monocytogenes DNA for DnaK operon, comp... 42 1.3
31gb|BT018615.1| Zea mays clone EL01N0501D02.d mRNA sequence 40 5.2
32emb|AL158077.15| Human DNA sequence from clone RP11-471J7 on chr... 40 5.2
33emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete ... 40 5.2
34gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 40 5.2
35emb|AJ698342.1| Megathura crenulata KLH2 gene for hemocyanin 2, ... 40 5.2
36emb|AL591222.2|HS378I6 Homo sapiens chromosome 9 BAC RP11-378I6,... 40 5.2

>emb|X83881.1|HCTTSAMDC H.chilense x T.turgidum conv. durum (Tritordeum) mRNA for
            S-adenosylmethionine decarboxylase
          Length = 1893

 Score =  440 bits (222), Expect = e-120
 Identities = 328/361 (90%), Gaps = 18/361 (4%)
 Strand = Plus / Plus

                                                                        
Query: 17   ttgctgtctccgccgggtcgcccaggtccgtcttccactgcttcgagggcgagaatgtgg 76
            |||||||||| ||||||||||||||||| ||||||||||||||||||      |||||||
Sbjct: 1534 ttgctgtctctgccgggtcgcccaggtctgtcttccactgcttcgag------aatgtgg 1587

                                                                        
Query: 77   agagcggccaccctctggtcaaggaaggcaagcttgccaacctgctcgcatggcgggcgg 136
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1588 agagcggccaccctctggtcaaggaaggcaagcttgccaacctgctcgcatggcgggcgg 1647

                                                                        
Query: 137  aggaggattctctggaggagggc------gcggtgctgtgcgagtgataagatgattttt 190
            ||||||| ||||| |||||||||      ||| |||||||||||||||||||||||||  
Sbjct: 1648 aggaggagtctctcgaggagggcacaggcgcgttgctgtgcgagtgataagatgattt-- 1705

                                                                        
Query: 191  gctgtcgctgttccgtctgtggaattcgttctgacttc---cgtttgtcgttttggttac 247
            ||||||||||||||||||||| ||||||||||||||     |||  ||||||| ||||||
Sbjct: 1706 gctgtcgctgttccgtctgtgtaattcgttctgactgttgtcgtgcgtcgttt-ggttac 1764

                                                                        
Query: 248  tgtgaagcagccggccaggctattgctactctgaataaactattagctctaggtggtttg 307
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1765 tgtgaagcagccggccaggctattgctactctgaataaactattagctctaggtggtttg 1824

                                                                        
Query: 308  ctgcgtctgccacaatgagcgtactgtttggagaaaatctgtcacaacttataaataagc 367
            |||||||||||||||||||| |||||||||||||| |  || ||||||||||||||||||
Sbjct: 1825 ctgcgtctgccacaatgagcatactgtttggagaagagttggcacaacttataaataagc 1884

             
Query: 368  a 368
            |
Sbjct: 1885 a 1885



to top

>gb|AF117660.1|AF117660 Triticum aestivum S-adenosylmethionine decarboxylase precursor, mRNA,
            complete cds
          Length = 1386

 Score =  359 bits (181), Expect = 4e-96
 Identities = 267/290 (92%), Gaps = 8/290 (2%)
 Strand = Plus / Plus

                                                                        
Query: 16   gttgctgtctccgccgggtcgcccaggtccgtcttccactgcttcgagggcgagaatgtg 75
            ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 1096 gttgctgtctctgccgggtcgcccaggtccgtcttccactgcttcgaggccgagagtgtg 1155

                                                                        
Query: 76   gagagcggccaccctctggtcaaggaaggcaagcttgccaacctgctcgcatggcgggcg 135
             | |||   |||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 1156 cacagc---caccctctggtcaaggaaggcaagctcgccaacctcctcgcatggcgggcg 1212

                                                                        
Query: 136  gaggaggattctctggaggagggcgcggtgctgtgcgagtgataagatgatttttgctgt 195
            ||||||||||||||||| ||||||||||||||||||||||||  | ||||  ||||||||
Sbjct: 1213 gaggaggattctctggaagagggcgcggtgctgtgcgagtgaagacatga--tttgctgt 1270

                                                                        
Query: 196  cgctgttccgtctgtggaattcgttctgact-tccgtttgtcgttttggttactgtgaag 254
            |||| |||| ||||||||||| ||||||||| || |||||||| ||||||||||||||||
Sbjct: 1271 cgctattccatctgtggaatttgttctgactgtcagtttgtcg-tttggttactgtgaag 1329

                                                              
Query: 255  cagccggccaggctattgctactctgaataaactattagctctaggtggt 304
            |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1330 cagccggccaggctattgct-ctctgaataaactattagctctaggtggt 1378



to top

>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
             complete sequence
          Length = 173171

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                 
Query: 292   agctctaggtggtttgctgcgtctgccacaatgagc 327
             |||||||||||||  |||||||||||||||||||||
Sbjct: 13856 agctctaggtggtcagctgcgtctgccacaatgagc 13891



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 247   ctgtgaagcagccggccaggctatt 271
             ||||||||||||| |||||||||||
Sbjct: 13758 ctgtgaagcagccagccaggctatt 13782



to top

>emb|Y07766.2|OSSADMEDC O.sativa mRNA for S-adenosylmethionine decarboxylase
          Length = 2036

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                
Query: 292  agctctaggtggtttgctgcgtctgccacaatgagc 327
            |||||||||||||  |||||||||||||||||||||
Sbjct: 1915 agctctaggtggtcagctgcgtctgccacaatgagc 1950



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 247  ctgtgaagcagccggccaggctatt 271
            ||||||||||||| |||||||||||
Sbjct: 1817 ctgtgaagcagccagccaggctatt 1841



to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                    
Query: 292      agctctaggtggtttgctgcgtctgccacaatgagc 327
                |||||||||||||  |||||||||||||||||||||
Sbjct: 24893271 agctctaggtggtcagctgcgtctgccacaatgagc 24893306



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 247      ctgtgaagcagccggccaggctatt 271
                ||||||||||||| |||||||||||
Sbjct: 24893173 ctgtgaagcagccagccaggctatt 24893197



to top

>gb|AF067194.1|AF067194 Oryza sativa S-adenosylmethionine decarboxylase mRNA, complete cds
          Length = 1560

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                
Query: 292  agctctaggtggtttgctgcgtctgccacaatgagc 327
            |||||||||||||  |||||||||||||||||||||
Sbjct: 1466 agctctaggtggtcagctgcgtctgccacaatgagc 1501



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 247  ctgtgaagcagccggccaggctatt 271
            ||||||||||||| |||||||||||
Sbjct: 1368 ctgtgaagcagccagccaggctatt 1392



to top

>dbj|AK100589.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106D22, full
            insert sequence
          Length = 2063

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                
Query: 292  agctctaggtggtttgctgcgtctgccacaatgagc 327
            |||||||||||||  |||||||||||||||||||||
Sbjct: 1959 agctctaggtggtcagctgcgtctgccacaatgagc 1994



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 247  ctgtgaagcagccggccaggctatt 271
            ||||||||||||| |||||||||||
Sbjct: 1861 ctgtgaagcagccagccaggctatt 1885



to top

>dbj|AK098918.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M21, full
            insert sequence
          Length = 2059

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                
Query: 292  agctctaggtggtttgctgcgtctgccacaatgagc 327
            |||||||||||||  |||||||||||||||||||||
Sbjct: 1959 agctctaggtggtcagctgcgtctgccacaatgagc 1994



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 247  ctgtgaagcagccggccaggctatt 271
            ||||||||||||| |||||||||||
Sbjct: 1861 ctgtgaagcagccagccaggctatt 1885



to top

>dbj|AK072162.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129L10, full
            insert sequence
          Length = 2711

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                
Query: 292  agctctaggtggtttgctgcgtctgccacaatgagc 327
            |||||||||||||  |||||||||||||||||||||
Sbjct: 1959 agctctaggtggtcagctgcgtctgccacaatgagc 1994



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 247  ctgtgaagcagccggccaggctatt 271
            ||||||||||||| |||||||||||
Sbjct: 1861 ctgtgaagcagccagccaggctatt 1885



to top

>dbj|AK067166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096P09, full
            insert sequence
          Length = 2063

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                
Query: 292  agctctaggtggtttgctgcgtctgccacaatgagc 327
            |||||||||||||  |||||||||||||||||||||
Sbjct: 1959 agctctaggtggtcagctgcgtctgccacaatgagc 1994



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 247  ctgtgaagcagccggccaggctatt 271
            ||||||||||||| |||||||||||
Sbjct: 1861 ctgtgaagcagccagccaggctatt 1885



to top

>dbj|AK062001.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-D05, full
            insert sequence
          Length = 1217

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                
Query: 292  agctctaggtggtttgctgcgtctgccacaatgagc 327
            |||||||||||||  |||||||||||||||||||||
Sbjct: 1117 agctctaggtggtcagctgcgtctgccacaatgagc 1152



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 247  ctgtgaagcagccggccaggctatt 271
            ||||||||||||| |||||||||||
Sbjct: 1019 ctgtgaagcagccagccaggctatt 1043



to top

>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete
             sequence
          Length = 148644

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                 
Query: 292   agctctaggtggtttgctgcgtctgccacaatgagc 327
             |||||||||||||  |||||||||||||||||||||
Sbjct: 13884 agctctaggtggtcagctgcgtctgccacaatgagc 13919



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 247   ctgtgaagcagccggccaggctatt 271
             ||||||||||||| |||||||||||
Sbjct: 13786 ctgtgaagcagccagccaggctatt 13810



to top

>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08,
              complete sequence
          Length = 170765

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                  
Query: 292    agctctaggtggtttgctgcgtctgccacaatgagc 327
              |||||||||||||  |||||||||||||||||||||
Sbjct: 154987 agctctaggtggtcagctgcgtctgccacaatgagc 155022



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 247    ctgtgaagcagccggccaggctatt 271
              ||||||||||||| |||||||||||
Sbjct: 154889 ctgtgaagcagccagccaggctatt 154913



to top

>gb|BT016840.1| Zea mays clone Contig673 mRNA sequence
          Length = 1866

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 292 agctctaggtggtttgctgcgtctgccacaatgagc 327
           |||||||||||||  ||||||||| |||||||||||
Sbjct: 144 agctctaggtggtcagctgcgtctaccacaatgagc 109



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 49  ttccactgcttcgagggcgagaatgtggagag 80
           ||||||||||| || |||||||| ||||||||
Sbjct: 463 ttccactgctttgacggcgagaacgtggagag 432



to top

>emb|Y07767.1|ZMSADMEDC Z.mays mRNA for S-adenosylmethionine decarboxylase
          Length = 1873

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                
Query: 292  agctctaggtggtttgctgcgtctgccacaatgagc 327
            |||||||||||||  ||||||||| |||||||||||
Sbjct: 1754 agctctaggtggtcagctgcgtctaccacaatgagc 1789



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 49   ttccactgcttcgagggcgagaatgtggagag 80
            ||||||||||| || |||||||| ||||||||
Sbjct: 1435 ttccactgctttgacggcgagaacgtggagag 1466



to top

>gb|AY103590.1| Zea mays PCO098412 mRNA sequence
          Length = 2400

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                
Query: 292  agctctaggtggtttgctgcgtctgccacaatgagc 327
            |||||||||||||  ||||||||| |||||||||||
Sbjct: 2003 agctctaggtggtcagctgcgtctaccacaatgagc 2038



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 49   ttccactgcttcgagggcgagaatgtggagag 80
            ||||||||||| || |||||||| ||||||||
Sbjct: 1684 ttccactgctttgacggcgagaacgtggagag 1715



to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 293      gctctaggtggtttgctgcgtctgcca 319
                ||||||| |||||||||||||||||||
Sbjct: 15331201 gctctagatggtttgctgcgtctgcca 15331175



to top

>dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0418B08
          Length = 165909

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 293    gctctaggtggtttgctgcgtctgcca 319
              ||||||| |||||||||||||||||||
Sbjct: 110390 gctctagatggtttgctgcgtctgcca 110364



to top

>dbj|AB122089.1| Oryza sativa (japonica cultivar-group) SAMDC1  gene for
            S-adenosylmethionine decarboxylase, complete cds
          Length = 2952

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 293  gctctaggtggtttgctgcgtctgcca 319
            ||||||| |||||||||||||||||||
Sbjct: 2791 gctctagatggtttgctgcgtctgcca 2817



to top

>dbj|AK102445.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093N21, full
            insert sequence
          Length = 2047

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 293  gctctaggtggtttgctgcgtctgcca 319
            ||||||| |||||||||||||||||||
Sbjct: 1891 gctctagatggtttgctgcgtctgcca 1917



to top

>dbj|AK101535.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048C18, full
            insert sequence
          Length = 2002

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 293  gctctaggtggtttgctgcgtctgcca 319
            ||||||| |||||||||||||||||||
Sbjct: 1892 gctctagatggtttgctgcgtctgcca 1918



to top

>dbj|AK100397.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086M03, full
            insert sequence
          Length = 2546

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 293  gctctaggtggtttgctgcgtctgcca 319
            ||||||| |||||||||||||||||||
Sbjct: 2417 gctctagatggtttgctgcgtctgcca 2443



to top

>dbj|AK067682.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116D10, full
            insert sequence
          Length = 2034

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 293  gctctaggtggtttgctgcgtctgcca 319
            ||||||| |||||||||||||||||||
Sbjct: 1891 gctctagatggtttgctgcgtctgcca 1917



to top

>gb|AY032614.1| Triticum aestivum receptor-like kinase (Wrlk-S3-9) gene, partial cds
          Length = 2389

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 338  gagaaaatctgtcacaacttat 359
            ||||||||||||||||||||||
Sbjct: 1286 gagaaaatctgtcacaacttat 1265



to top

>gb|AF325197.1|AF325197 Triticum aestivum LRK33 (Lrk33) and TAK33 (Tak33) genes, complete cds
          Length = 20754

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 338  gagaaaatctgtcacaacttat 359
            ||||||||||||||||||||||
Sbjct: 8276 gagaaaatctgtcacaacttat 8297



to top

>gb|AF325196.1|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (Lrr19), TAK19-1 (Tak19-1), and
             LRK19 (Lrk19) genes, complete cds
          Length = 35872

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 338   gagaaaatctgtcacaacttat 359
             ||||||||||||||||||||||
Sbjct: 29636 gagaaaatctgtcacaacttat 29615



to top

>emb|CR847994.10| Zebrafish DNA sequence from clone CH211-203H15 in linkage group 4,
             complete sequence
          Length = 100991

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 333   gtttggagaaaatctgtcacaa 354
             ||||||||||||||||||||||
Sbjct: 68561 gtttggagaaaatctgtcacaa 68540



to top

>gb|AC125203.3| Mus musculus BAC clone RP23-233M21 from 19, complete sequence
          Length = 191540

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 86    accctctggtcaaggaaggca 106
             |||||||||||||||||||||
Sbjct: 51053 accctctggtcaaggaaggca 51033



to top

>emb|AL591979.1| Listeria monocytogenes strain EGD, complete genome, segment 7/12
          Length = 240050

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 132   ggcggaggaggattctctgga 152
             |||||||||||||||||||||
Sbjct: 94912 ggcggaggaggattctctgga 94892



to top

>dbj|AB023064.1| Listeria monocytogenes DNA for DnaK operon, complete cds
          Length = 8881

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 132  ggcggaggaggattctctgga 152
            |||||||||||||||||||||
Sbjct: 4181 ggcggaggaggattctctgga 4201



to top

>gb|BT018615.1| Zea mays clone EL01N0501D02.d mRNA sequence
          Length = 2057

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 49   ttccactgcttcgagggcgagaatgtggagag 80
            ||||||||||| || |||||||| ||||||||
Sbjct: 1615 ttccactgctttgacggcgagaacgtggagag 1646



to top

>emb|AL158077.15| Human DNA sequence from clone RP11-471J7 on chromosome 9 Contains the 5'
              end of the SLC24A2 gene for solute carrier family 24
              (sodium/potassium/calcium exchanger), member 2 (NCKX2) and
              a CpG island, complete sequence
          Length = 159900

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 336    tggagaaaatctgtcacaacttataaat 363
              ||||||||| ||||||||||||| ||||
Sbjct: 129030 tggagaaaaactgtcacaacttaaaaat 129003



to top

>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29
          Length = 292200

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     gtctccgccgggtcgcccag 41
              ||||||||||||||||||||
Sbjct: 276890 gtctccgccgggtcgcccag 276909



to top

>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    gcaagcttgccaacctgctc 123
              ||||||||||||||||||||
Sbjct: 494484 gcaagcttgccaacctgctc 494503



to top

>emb|AJ698342.1| Megathura crenulata KLH2 gene for hemocyanin 2, exons 1-17
          Length = 24990

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 237   gttttggttactgtgaagca 256
             ||||||||||||||||||||
Sbjct: 19064 gttttggttactgtgaagca 19045



to top

>emb|AL591222.2|HS378I6 Homo sapiens chromosome 9 BAC RP11-378I6, complete sequence
          Length = 147211

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 336  tggagaaaatctgtcacaacttataaat 363
            ||||||||| ||||||||||||| ||||
Sbjct: 2540 tggagaaaaactgtcacaacttaaaaat 2513


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,849,401
Number of Sequences: 3902068
Number of extensions: 2849401
Number of successful extensions: 76534
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76409
Number of HSP's gapped (non-prelim): 120
length of query: 390
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 368
effective length of database: 17,147,199,772
effective search space: 6310169516096
effective search space used: 6310169516096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top