ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd24j16 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_422758.1| PREDICTED: Gallus gallus similar to hypothetical gene supported by AK045595 (LOC424951), mRNA Length = 2547 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Plus Query: 327 ggggccggcggagagcctggccgt 350 |||||||||||||||||||||||| Sbjct: 768 ggggccggcggagagcctggccgt 791 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Plus Query: 180 ggggccggcggagagcctggccgt 203 |||||||||||||||||||||||| Sbjct: 768 ggggccggcggagagcctggccgt 791
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Plus Query: 306 cgccatctcgccggcggcgtcggggccggcgg 337 ||||||||||||||||||||||| | |||||| Sbjct: 13199834 cgccatctcgccggcggcgtcggcggcggcgg 13199865 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 agcggcggtggcggcgacag 33 |||||||||||||||||||| Sbjct: 25576385 agcggcggtggcggcgacag 25576366
>gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1113A07, from chromosome 3, complete sequence Length = 151173 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Minus Query: 306 cgccatctcgccggcggcgtcggggccggcgg 337 ||||||||||||||||||||||| | |||||| Sbjct: 26804 cgccatctcgccggcggcgtcggcggcggcgg 26773
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Plus Query: 306 cgccatctcgccggcggcgtcggggccggcgg 337 ||||||||||||||||||||||| | |||||| Sbjct: 13196609 cgccatctcgccggcggcgtcggcggcggcgg 13196640 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 agcggcggtggcggcgacag 33 |||||||||||||||||||| Sbjct: 25667694 agcggcggtggcggcgacag 25667675
>dbj|AK069305.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012D01, full insert sequence Length = 1835 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Minus Query: 306 cgccatctcgccggcggcgtcggggccggcgg 337 ||||||||||||||||||||||| | |||||| Sbjct: 93 cgccatctcgccggcggcgtcggcggcggcgg 62
>gb|AC136284.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1739D07, from chromosome 3, complete sequence Length = 149539 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Minus Query: 306 cgccatctcgccggcggcgtcggggccggcgg 337 ||||||||||||||||||||||| | |||||| Sbjct: 120007 cgccatctcgccggcggcgtcggcggcggcgg 119976
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 315 gccggcggcgtcggggccggcgg 337 ||||||||||||||||||||||| Sbjct: 3921593 gccggcggcgtcggggccggcgg 3921615
>emb|BX842583.1| Mycobacterium tuberculosis H37Rv complete genome; segment 12/13 Length = 349606 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 315 gccggcggcgtcggggccggcgg 337 ||||||||||||||||||||||| Sbjct: 110584 gccggcggcgtcggggccggcgg 110606
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 10 gcgcagcggcggtggcggcgaca 32 ||||||||||||||||||||||| Sbjct: 3036410 gcgcagcggcggtggcggcgaca 3036388
>ref|NM_019377.1| Rattus norvegicus tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide (Ywhab), mRNA Length = 2756 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 12 gcagcggcggtggcggcgacag 33 |||||||||||||||||||||| Sbjct: 65 gcagcggcggtggcggcgacag 44
>gb|AY657148.1| Synthetic construct Peudomonas aeruginosa clone FLH033015.01F PA1228 gene, partial cds Length = 351 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Minus Query: 9 ggcgcagcggcggtggcggcgacaggggca 38 |||||||||||||||| || |||||||||| Sbjct: 185 ggcgcagcggcggtgggggtgacaggggca 156
>emb|AL365496.15| Human DNA sequence from clone RP11-449J3 on chromosome 10 Contains the 3' end of the PCDH15 gene for protocadherin 15 and a novel gene, complete sequence Length = 173728 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 559 gaatgattattattaataaactgaaa 584 |||||||||||||||| ||||||||| Sbjct: 31317 gaatgattattattaacaaactgaaa 31292
>gb|BC076502.1| Rattus norvegicus tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide, mRNA (cDNA clone MGC:91711 IMAGE:7100393), complete cds Length = 2716 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 12 gcagcggcggtggcggcgacag 33 |||||||||||||||||||||| Sbjct: 59 gcagcggcggtggcggcgacag 38
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 cggcgcagcggcggtggcggcg 29 |||||||||||||||||||||| Sbjct: 1928151 cggcgcagcggcggtggcggcg 1928130
>gb|S55223.1| 14-3-3 protein beta subtype=putative protein kinase C regulatory protein [rats, brain, mRNA, 2666 nt] Length = 2666 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 12 gcagcggcggtggcggcgacag 33 |||||||||||||||||||||| Sbjct: 60 gcagcggcggtggcggcgacag 39
>gb|S83440.1| RNH-1=prepronerve growth factor homolog [rats, brain, hepatoma Kagura-2 cells, mRNA, 2756 nt] Length = 2756 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 12 gcagcggcggtggcggcgacag 33 |||||||||||||||||||||| Sbjct: 65 gcagcggcggtggcggcgacag 44
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 15 gcggcggtggcggcgacaggggcaag 40 ||||||| |||||||||||||||||| Sbjct: 6217941 gcggcggcggcggcgacaggggcaag 6217966
>gb|AE004552.1| Pseudomonas aeruginosa PAO1, section 113 of 529 of the complete genome Length = 11158 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Plus Query: 9 ggcgcagcggcggtggcggcgacaggggca 38 |||||||||||||||| || |||||||||| Sbjct: 5863 ggcgcagcggcggtgggggtgacaggggca 5892
>dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0436F11 Length = 165550 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 15 gcggcggtggcggcgacaggggcaag 40 ||||||| |||||||||||||||||| Sbjct: 131760 gcggcggcggcggcgacaggggcaag 131785
>dbj|AP004727.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0516A04 Length = 145107 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 15 gcggcggtggcggcgacaggggcaag 40 ||||||| |||||||||||||||||| Sbjct: 12017 gcggcggcggcggcgacaggggcaag 12042
>dbj|AK063324.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-H05, full insert sequence Length = 1808 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 15 gcggcggtggcggcgacaggggcaag 40 ||||||| |||||||||||||||||| Sbjct: 1375 gcggcggcggcggcgacaggggcaag 1400
>emb|CR376854.12| Zebrafish DNA sequence from clone DKEY-197C15 in linkage group 24, complete sequence Length = 201044 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 564 attattattaataaactgaaaa 585 |||||||||||||||||||||| Sbjct: 162696 attattattaataaactgaaaa 162675
>dbj|D17446.1| Rattus norvegicus mRNA for 14-3-3 protein beta-subtype, complete cds Length = 2666 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 12 gcagcggcggtggcggcgacag 33 |||||||||||||||||||||| Sbjct: 60 gcagcggcggtggcggcgacag 39
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 5 ttccggcgcagcggcggtggcggcg 29 ||||| ||||||||||||||||||| Sbjct: 1203298 ttccgtcgcagcggcggtggcggcg 1203274
>ref|XM_463978.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1560 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 367 ggggacgtcgtcgacgaagaa 387 ||||||||||||||||||||| Sbjct: 837 ggggacgtcgtcgacgaagaa 817
>ref|XM_462873.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 672 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 cggcgcagcggcggtggcggc 28 ||||||||||||||||||||| Sbjct: 579 cggcgcagcggcggtggcggc 599
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 5 ttccggcgcagcggcggtggcggcg 29 |||| |||||||||||||||||||| Sbjct: 4676125 ttccagcgcagcggcggtggcggcg 4676101
>gb|AC115948.12| Mus musculus chromosome 16, clone RP24-568J12, complete sequence Length = 212604 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 261 caggatccaggcttacaatct 281 ||||||||||||||||||||| Sbjct: 166516 caggatccaggcttacaatct 166496
>gb|AC117224.3| Mus musculus BAC clone RP23-356N8 from chromosome 16, complete sequence Length = 197831 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 261 caggatccaggcttacaatct 281 ||||||||||||||||||||| Sbjct: 163168 caggatccaggcttacaatct 163188
>emb|AL589863.11| Human DNA sequence from clone RP11-310J24 on chromosome 10, complete sequence Length = 168231 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 560 aatgattattattaataaact 580 ||||||||||||||||||||| Sbjct: 22155 aatgattattattaataaact 22135
>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29 Length = 339650 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 317 cggcggcgtcggggccggcggagag 341 |||||||||||||| |||||||||| Sbjct: 310287 cggcggcgtcgggggcggcggagag 310263
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 308 ccatctcgccggcggcgtcgg 328 ||||||||||||||||||||| Sbjct: 1979552 ccatctcgccggcggcgtcgg 1979572
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 367 ggggacgtcgtcgacgaagaa 387 ||||||||||||||||||||| Sbjct: 1445679 ggggacgtcgtcgacgaagaa 1445659 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 ggcggtggcggcgacagggg 36 |||||||||||||||||||| Sbjct: 3207033 ggcggtggcggcgacagggg 3207052 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 tctcgccggcgacgtcggggccgg 187 |||||||||||||||||| ||||| Sbjct: 1237734 tctcgccggcgacgtcggagccgg 1237711
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 cggcgcagcggcggtggcggc 28 ||||||||||||||||||||| Sbjct: 14752983 cggcgcagcggcggtggcggc 14753003 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 gcagcggcggtggcggcgac 31 |||||||||||||||||||| Sbjct: 28565433 gcagcggcggtggcggcgac 28565452 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 agcggcggtggcggcgacag 33 |||||||||||||||||||| Sbjct: 27465121 agcggcggtggcggcgacag 27465140
>dbj|AB196974.1| Sagittaria pygmaea SpXTH1 mRNA for xyloglucan endotransglucosylase/hydrolase, complete cds Length = 1101 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 367 ggggacgtcgtcgacgaagaa 387 ||||||||||||||||||||| Sbjct: 640 ggggacgtcgtcgacgaagaa 620
>gb|AE004806.1| Pseudomonas aeruginosa PAO1, section 367 of 529 of the complete genome Length = 10506 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 312 ctcgccggcggcgtcggggccggcg 336 |||| |||||||||||||||||||| Sbjct: 8956 ctcggcggcggcgtcggggccggcg 8932
>dbj|AP005311.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0482F12 Length = 147735 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 367 ggggacgtcgtcgacgaagaa 387 ||||||||||||||||||||| Sbjct: 126951 ggggacgtcgtcgacgaagaa 126931
>dbj|AP003257.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0460H02 Length = 155012 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 cggcgcagcggcggtggcggc 28 ||||||||||||||||||||| Sbjct: 122083 cggcgcagcggcggtggcggc 122103
>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0576F08 Length = 135314 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 367 ggggacgtcgtcgacgaagaa 387 ||||||||||||||||||||| Sbjct: 9100 ggggacgtcgtcgacgaagaa 9080
>dbj|AK073018.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149H23, full insert sequence Length = 1562 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 367 ggggacgtcgtcgacgaagaa 387 ||||||||||||||||||||| Sbjct: 837 ggggacgtcgtcgacgaagaa 817
>emb|BX000479.11| Mouse DNA sequence from clone RP23-139I16 on chromosome X, complete sequence Length = 145084 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 557 tggaatgattattattaataa 577 ||||||||||||||||||||| Sbjct: 118552 tggaatgattattattaataa 118532
>ref|NM_188958.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1590 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 tctcgccggcgacgtcggggccgg 187 |||||||||||||||||| ||||| Sbjct: 559 tctcgccggcgacgtcggagccgg 536
>ref|XM_463939.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1693 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 tctcgccggcgacgtcggggccgg 187 |||||||||||||||||| ||||| Sbjct: 636 tctcgccggcgacgtcggagccgg 613
>ref|NM_192152.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3156 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 gcagcggcggtggcggcgac 31 |||||||||||||||||||| Sbjct: 685 gcagcggcggtggcggcgac 704
>ref|XM_615134.2| PREDICTED: Bos taurus similar to Luc7 homolog (S. cerevisiae)-like isoform 1 (LOC535131), mRNA Length = 1117 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 gcagcggcggtggcggcgac 31 |||||||||||||||||||| Sbjct: 42 gcagcggcggtggcggcgac 23
>gb|AC139174.3| Oryza sativa chromosome 3 BAC OSJNBb0065L20 genomic sequence, complete sequence Length = 167427 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 agcggcggtggcggcgacag 33 |||||||||||||||||||| Sbjct: 125966 agcggcggtggcggcgacag 125985
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 gcagcggcggtggcggcgac 31 |||||||||||||||||||| Sbjct: 2342067 gcagcggcggtggcggcgac 2342086
>emb|AL591784.1|SME591784 Sinorhizobium meliloti 1021 complete chromosome; segment 3/12 Length = 300000 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 cggcgcagcggcggtggcggcgac 31 ||||||||||||||||||| |||| Sbjct: 191995 cggcgcagcggcggtggcgtcgac 192018
>gb|AE008890.1| Salmonella typhimurium LT2, section 194 of 220 of the complete genome Length = 21582 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 tccggcgcagcggcggtggcggcg 29 ||||||||||||||| |||||||| Sbjct: 3032 tccggcgcagcggcgatggcggcg 3055
>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16 Length = 349497 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 cggcggcgtcggggccggcg 336 |||||||||||||||||||| Sbjct: 173897 cggcggcgtcggggccggcg 173916
>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14 Length = 348257 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 cggcggcgtcggggccggcg 336 |||||||||||||||||||| Sbjct: 297700 cggcggcgtcggggccggcg 297719
>gb|AY993941.1| Microbacterium arborescens strain SE 14 cosmid MAS10D5, complete sequence Length = 33203 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 cggcgacgtcggggccggcg 189 |||||||||||||||||||| Sbjct: 32427 cggcgacgtcggggccggcg 32408
>emb|AL627279.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 15/20 Length = 264050 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 tccggcgcagcggcggtggcggcg 29 ||||||||||||||| |||||||| Sbjct: 202963 tccggcgcagcggcgatggcggcg 202940
>emb|BX324006.19| Zebrafish DNA sequence from clone DKEY-46M10 in linkage group 16, complete sequence Length = 135340 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 558 ggaatgattattattaataaactg 581 ||||| |||||||||||||||||| Sbjct: 55304 ggaattattattattaataaactg 55281
>emb|AL929016.5| Zebrafish DNA sequence from clone DKEY-24J9 in linkage group 4 Contains the gene for a novel protein (zgc:63880), the 3' end of the gene for a novel protein similar to vertebrate KCND2, the 5' end of the ing3 gene for inhibitor of growth family member 3 and a CpG island, complete sequence Length = 200582 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 560 aatgattattattaataaac 579 |||||||||||||||||||| Sbjct: 7245 aatgattattattaataaac 7226
>gb|AC122178.2| Homo sapiens chromosome 3 clone RP11-340I14, complete sequence Length = 201917 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 ggcggcgtcggggccggcgg 337 |||||||||||||||||||| Sbjct: 130492 ggcggcgtcggggccggcgg 130511
>emb|BX323601.6| Zebrafish DNA sequence from clone RP71-14P11, complete sequence Length = 207067 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 ttccggcgcagcggcggtggcggc 28 ||||||||| |||||||||||||| Sbjct: 11078 ttccggcgcggcggcggtggcggc 11055
>ref|NM_059760.3| Caenorhabditis elegans Enhancer of Ksr-1 Lethality family member (ekl-3) (ekl-3) mRNA, complete cds Length = 3473 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 552 gcacgtggaatgattattat 571 |||||||||||||||||||| Sbjct: 580 gcacgtggaatgattattat 599
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 tctcgccggcgacgtcggggccgg 187 |||||||||||||||||| ||||| Sbjct: 20423250 tctcgccggcgacgtcggagccgg 20423273
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 cggcgcagcggcggtggcgg 27 |||||||||||||||||||| Sbjct: 9507093 cggcgcagcggcggtggcgg 9507112
>emb|BX294659.9| Zebrafish DNA sequence from clone DKEYP-15D12 in linkage group 12, complete sequence Length = 171920 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 560 aatgattattattaataaac 579 |||||||||||||||||||| Sbjct: 166892 aatgattattattaataaac 166911
>dbj|AP003450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0034C09 Length = 170226 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 gcagcggcggtggcggcgac 31 |||||||||||||||||||| Sbjct: 91872 gcagcggcggtggcggcgac 91891
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 tccggcgcagcggcggtggcggcg 29 ||||||||||||||| |||||||| Sbjct: 4056509 tccggcgcagcggcgatggcggcg 4056532
>dbj|AP004145.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0047F09 Length = 79652 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 agcggcggtggcggcgacag 33 |||||||||||||||||||| Sbjct: 55010 agcggcggtggcggcgacag 55029
>dbj|AP004885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0575F10 Length = 150462 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 tctcgccggcgacgtcggggccgg 187 |||||||||||||||||| ||||| Sbjct: 68825 tctcgccggcgacgtcggagccgg 68802
>dbj|AP004843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1103G11 Length = 182931 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 ggcggtggcggcgacagggg 36 |||||||||||||||||||| Sbjct: 79220 ggcggtggcggcgacagggg 79239
>dbj|AP006465.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1059D01 Length = 158792 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 cggcgcagcggcggtggcgg 27 |||||||||||||||||||| Sbjct: 14823 cggcgcagcggcggtggcgg 14842
>dbj|AP006447.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1100H02 Length = 128773 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 cggcgcagcggcggtggcgg 27 |||||||||||||||||||| Sbjct: 89079 cggcgcagcggcggtggcgg 89098
>dbj|AP006754.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0018H03, complete sequence Length = 94450 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 tctcgccggcgacgtcggggccgg 187 |||||||||||||||||| ||||| Sbjct: 11763 tctcgccggcgacgtcggagccgg 11740
>dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0456B03 Length = 152973 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 tctcgccggcgacgtcggggccgg 187 |||||||||||||||||| ||||| Sbjct: 53880 tctcgccggcgacgtcggagccgg 53903
>dbj|AK111036.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-175-A08, full insert sequence Length = 885 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 gcagcggcggtggcggcgac 31 |||||||||||||||||||| Sbjct: 140 gcagcggcggtggcggcgac 159
>dbj|AK106726.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-H03, full insert sequence Length = 1693 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 tctcgccggcgacgtcggggccgg 187 |||||||||||||||||| ||||| Sbjct: 636 tctcgccggcgacgtcggagccgg 613
>gb|AF045609.1|AF045609 Sinorhizobium meliloti oxidoreductase (ordL) gene, partial cds; and glucose-6-phosphate dehydrogenase (zwf), oxidoreductase (devB), 6-phosphogluconate dehydratase (edd), ATP-binding cassette protein (aglK), alpha-glucosidase (aglA), inner membrane permease (aglG), inner membrane permease (aglF), alpha-glucoside binding protein (aglE), and regulatory protein (aglR) genes, complete cds Length = 15640 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 cggcgcagcggcggtggcggcgac 31 ||||||||||||||||||| |||| Sbjct: 13112 cggcgcagcggcggtggcgtcgac 13089
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 tccggcgcagcggcggtggcggcg 29 ||||||||||||||| |||||||| Sbjct: 3652626 tccggcgcagcggcgatggcggcg 3652603
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 tccggcgcagcggcggtggcggcg 29 ||||||||||||||| |||||||| Sbjct: 4211512 tccggcgcagcggcgatggcggcg 4211535
>emb|Z79752.2|CED2005 Caenorhabditis elegans Cosmid D2005, complete sequence Length = 43440 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 552 gcacgtggaatgattattat 571 |||||||||||||||||||| Sbjct: 38305 gcacgtggaatgattattat 38324 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,730,884 Number of Sequences: 3902068 Number of extensions: 3730884 Number of successful extensions: 103615 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101569 Number of HSP's gapped (non-prelim): 2046 length of query: 585 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 562 effective length of database: 17,143,297,704 effective search space: 9634533309648 effective search space used: 9634533309648 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
