ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd24j10 |
|---|---|
| Clone Library Name | barley_pub |
>TNPX_ECOLI (Q00042) Putative transposon gamma-delta 80.3 kDa protein| (Transposon Tn1000 protein tnpX) Length = 698 Score = 377 bits (969), Expect = e-104 Identities = 192/206 (93%), Positives = 192/206 (93%) Frame = +2 Query: 56 KSALFIQLNEHWKKDKKILILSFSPDDSQIIGFRSMLKPFTGSFNLARAATRLLWRYAML 235 KSALFIQLNEHWKKDKKILILSFSPDDSQIIGFRSMLKPFTGSFNLARAATRLLWRYAML Sbjct: 54 KSALFIQLNEHWKKDKKILILSFSPDDSQIIGFRSMLKPFTGSFNLARAATRLLWRYAML 113 Query: 236 MEIASYISSHYKLSSQISSETLLNEHLKKWNSAQGDILRKCRLVAKEYLDENNPEESIGD 415 MEIASYISSHYKLSSQISSETLLNEHLKKWNSAQGDILRKCRLVAKEYLDENNPEESIGD Sbjct: 114 MEIASYISSHYKLSSQISSETLLNEHLKKWNSAQGDILRKCRLVAKEYLDENNPEESIGD 173 Query: 416 LQFNLNISEIENNIVSLLERSDRKVVILMDKLDEAYEPDNXXXXXXXXXXXXXXELNQKA 595 LQFNLNISEIENNIVSLLERSDRKVVILMDKLDEAYEPDN ELNQKA Sbjct: 174 LQFNLNISEIENNIVSLLERSDRKVVILMDKLDEAYEPDNIGIGIIAGLAYASIELNQKA 233 Query: 596 KCIRPIIFLRDNIFRSLSKEDPDYSR 673 KCIRPIIFLRDNIFRSLSKEDPDYSR Sbjct: 234 KCIRPIIFLRDNIFRSLSKEDPDYSR 259
>PLCB1_BOVIN (P10894) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C-beta-1) (PLC-beta-1) (PLC-I) (PLC-154) Length = 1216 Score = 32.3 bits (72), Expect = 1.3 Identities = 24/90 (26%), Positives = 46/90 (51%) Frame = +2 Query: 239 EIASYISSHYKLSSQISSETLLNEHLKKWNSAQGDILRKCRLVAKEYLDENNPEESIGDL 418 E+ + H+K ++ L+ EH K+N Q D LR+ R ++ ++N ++S Sbjct: 929 EMKDLVKRHHKKTTD-----LIKEHTTKYNEIQNDYLRR-RAALEKTAKKDNKKKSEPSS 982 Query: 419 QFNLNISEIENNIVSLLERSDRKVVILMDK 508 +++ S IE ++ +L +K+V L DK Sbjct: 983 PDHVS-STIEQDLAALDAEMTQKLVDLKDK 1011
>RAB3D_RAT (Q63942) GTP-binding protein Rab-3D| Length = 219 Score = 31.6 bits (70), Expect = 2.3 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = +2 Query: 323 WNSAQGDIL-RKCRLVAKEYLDENNPEESIGDLQFNLNISEIENNIVSLLERSDRKVVIL 499 W++AQ ++ KC L + + + + GDL F + + NI ++ + +R V I+ Sbjct: 125 WDNAQVILVGNKCDLEDERVVSAEDGQRLAGDLGFEFFEASAKENI-NVKQVFERLVDII 183 Query: 500 MDKLDEAYEPDN 535 DK++E+ EP + Sbjct: 184 CDKMNESLEPSS 195
>PRKDC_HUMAN (P78527) DNA-dependent protein kinase catalytic subunit (EC 2.7.11.1)| (DNA-PK catalytic subunit) (DNA-PKcs) (DNPK1) (p460) Length = 4128 Score = 31.2 bits (69), Expect = 3.0 Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 15/116 (12%) Frame = +2 Query: 233 LMEIASYISSHYKLSSQISSETLLNEHLKKWNSAQGD--------ILRKCRLVAK--EYL 382 + E S+IS LSSQ+ + LLN ++ A+ D I +C ++K E L Sbjct: 3138 IQEFISFISKQGNLSSQVPLKRLLNTWTNRYPDAKMDPMNIWDDIITNRCFFLSKIEEKL 3197 Query: 383 -----DENNPEESIGDLQFNLNISEIENNIVSLLERSDRKVVILMDKLDEAYEPDN 535 D + + GD + + E E +I SL+ K + M +D A + +N Sbjct: 3198 TPLPEDNSMNVDQDGDPSDRMEVQEQEEDISSLIRSC--KFSMKMKMIDSARKQNN 3251
>PLCB1_RAT (P10687) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C-beta-1) (PLC-beta-1) (PLC-I) (PLC-154) Length = 1216 Score = 30.8 bits (68), Expect = 3.9 Identities = 23/90 (25%), Positives = 42/90 (46%) Frame = +2 Query: 239 EIASYISSHYKLSSQISSETLLNEHLKKWNSAQGDILRKCRLVAKEYLDENNPEESIGDL 418 E+ + H+K +++ L+ EH K+N Q D LR R A E + + ++ Sbjct: 929 EMKDLVKRHHKKTTE-----LIKEHTTKYNEIQNDYLR--RRAALEKSAKKDSKKKSEPS 981 Query: 419 QFNLNISEIENNIVSLLERSDRKVVILMDK 508 + S IE ++ +L +K++ L DK Sbjct: 982 SPDHGSSAIEQDLAALDAEMTQKLIDLKDK 1011
>PLCB1_HUMAN (Q9NQ66) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C-beta-1) (PLC-beta-1) (PLC-I) (PLC-154) Length = 1216 Score = 30.0 bits (66), Expect = 6.7 Identities = 23/90 (25%), Positives = 41/90 (45%) Frame = +2 Query: 239 EIASYISSHYKLSSQISSETLLNEHLKKWNSAQGDILRKCRLVAKEYLDENNPEESIGDL 418 E+ + H+K ++ L+ EH K+N Q D LR R A E + + ++ Sbjct: 929 EMKDLVKRHHKKTTD-----LIKEHTTKYNEIQNDYLR--RRAALEKSAKKDSKKKSEPS 981 Query: 419 QFNLNISEIENNIVSLLERSDRKVVILMDK 508 + S IE ++ +L +K++ L DK Sbjct: 982 SPDHGSSTIEQDLAALDAEMTQKLIDLKDK 1011
>LUM_RABIT (O46379) Lumican (Keratan sulfate proteoglycan lumican) (KSPG| lumican) (Fragment) Length = 192 Score = 29.6 bits (65), Expect = 8.7 Identities = 15/61 (24%), Positives = 34/61 (55%) Frame = +2 Query: 299 LLNEHLKKWNSAQGDILRKCRLVAKEYLDENNPEESIGDLQFNLNISEIENNIVSLLERS 478 +L+ +L + + +G + K + + K +++ NN ES+G L +L ++ +N ++ L Sbjct: 5 ILDHNLLENSKIKGKVFSKLKQLKKLHINHNNLTESVGPLPKSLEDLQLTHNKITKLGSF 64 Query: 479 D 481 D Sbjct: 65 D 65
>DPOM_AGABT (P30322) Probable DNA polymerase (EC 2.7.7.7) (Fragment)| Length = 797 Score = 29.6 bits (65), Expect = 8.7 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 6/83 (7%) Frame = +2 Query: 305 NEHLKKWNSAQGDILRKCRLVAKEYLDENNPEESIGDLQFNLNISEIE------NNIVSL 466 ++ LK WNS++ R C EYL E+ SIG+ +F++N ++ N + Sbjct: 84 DQSLKYWNSSKYPYPRWC----DEYLTESEFVRSIGEYKFHVNNGTVKYWEKYYNFPDMV 139 Query: 467 LERSDRKVVILMDKLDEAYEPDN 535 SD+K + + LD DN Sbjct: 140 FNYSDKKHDLRIGSLDLETYGDN 162 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,346,435 Number of Sequences: 219361 Number of extensions: 1261426 Number of successful extensions: 3153 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 3106 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3153 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6598423128 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
