ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd24j05 |
|---|---|
| Clone Library Name | barley_pub |
>CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip bulb| chitinase-1) (TBC-1) Length = 314 Score = 113 bits (282), Expect = 1e-25 Identities = 55/93 (59%), Positives = 66/93 (70%) Frame = +1 Query: 1 PXTNGYLFRAYIGAQFTGVRFSDVPVNTGVSFHYILAFAIDYTPVAQKPTPTPTNGAFSA 180 P T+ +FR YIG+QF V+FSDVP+N V FH+ILAFAIDYT +PTPTNG F Sbjct: 22 PLTSALVFREYIGSQFNDVKFSDVPINPDVDFHFILAFAIDYT---SGSSPTPTNGNFKP 78 Query: 181 FWDTASLSRADVAAIKAAHPNVSVMVGLGGDSV 279 FWDT +LS + VAA+K H NV V + LGGDSV Sbjct: 79 FWDTNNLSPSQVAAVKRTHSNVKVSLSLGGDSV 111
>CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chitinase-2) (TBC-2)| Length = 275 Score = 108 bits (271), Expect = 3e-24 Identities = 55/87 (63%), Positives = 64/87 (73%) Frame = +1 Query: 19 LFRAYIGAQFTGVRFSDVPVNTGVSFHYILAFAIDYTPVAQKPTPTPTNGAFSAFWDTAS 198 LFR YIGAQF V+FSDVP+N V FH+ILAFAIDYT +PTPTNG F+ FWDT + Sbjct: 2 LFREYIGAQFNDVKFSDVPINPNVDFHFILAFAIDYT---SGSSPTPTNGNFNPFWDTNN 58 Query: 199 LSRADVAAIKAAHPNVSVMVGLGGDSV 279 LS + VAAIK + NV V V LGG+SV Sbjct: 59 LSPSQVAAIKRTYNNVKVSVSLGGNSV 85
>SFRIP_HUMAN (Q99590) SFRS2-interacting protein (Splicing factor,| arginine/serine-rich 2-interacting protein) (SC35-interacting protein 1) (CTD-associated SR protein 11) (Splicing regulatory protein 129) (SRrp129) (NY-REN-40 antigen) Length = 1148 Score = 35.4 bits (80), Expect = 0.037 Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 5/87 (5%) Frame = +1 Query: 31 YIGAQFTGVRFSDVPVNTGVSFHYILAFAIDYTPVAQKPTPTPTN-----GAFSAFWDTA 195 YI +Q G + +P ++ VS + TPV PT P N G S ++ Sbjct: 976 YIASQPDGKQLQGIPSSSHVSNNMS-------TPVLPAPTAAPGNTGMVQGPSSGNTSSS 1028 Query: 196 SLSRADVAAIKAAHPNVSVMVGLGGDS 276 S S+A AA+K A VSV V DS Sbjct: 1029 SHSKASNAAVKLAESKVSVAVEASADS 1055
>T2_MOUSE (Q06666) Octapeptide-repeat protein T2| Length = 185 Score = 34.3 bits (77), Expect = 0.083 Identities = 18/36 (50%), Positives = 21/36 (58%) Frame = +3 Query: 186 GHGEPVPRRRGRHQGRAPERERHGRPWRRQRAGHRQ 293 G GE R+RGR +GR ER R GR RQR R+ Sbjct: 64 GRGE-AERQRGRERGREVERHRRGREAERQRGRERE 98
>Y2598_MYCBO (P65010) Hypothetical protein Mb2598c| Length = 341 Score = 32.3 bits (72), Expect = 0.32 Identities = 18/46 (39%), Positives = 23/46 (50%) Frame = -3 Query: 293 LTMSCTLSPPRPTMTLTFGCAALMAATSARDRLAVSQNALNAPLVG 156 L SC L+ RP+ T T G A A A+ RL + L P+VG Sbjct: 68 LCSSCVLTIERPSDTNTAGLAEFARAEGAKRRLIAELHELKLPIVG 113
>Y2568_MYCTU (P65009) Hypothetical protein Rv2568c/MT2644| Length = 341 Score = 32.3 bits (72), Expect = 0.32 Identities = 18/46 (39%), Positives = 23/46 (50%) Frame = -3 Query: 293 LTMSCTLSPPRPTMTLTFGCAALMAATSARDRLAVSQNALNAPLVG 156 L SC L+ RP+ T T G A A A+ RL + L P+VG Sbjct: 68 LCSSCVLTIERPSDTNTAGLAEFARAEGAKRRLIAELHELKLPIVG 113
>RAI1_HUMAN (Q7Z5J4) Retinoic acid-induced protein 1| Length = 1906 Score = 29.6 bits (65), Expect = 2.0 Identities = 14/30 (46%), Positives = 15/30 (50%) Frame = +1 Query: 130 PVAQKPTPTPTNGAFSAFWDTASLSRADVA 219 P P P PT AF F DT + S AD A Sbjct: 712 PTLGVPAPDPTTAAFDCFPDTTAASSADSA 741
>HSP1_OCTVU (P83214) Sperm protamine P1 (Po1) [Contains: Sperm protamine P2| (Po2) (Main protamine)] Length = 56 Score = 29.6 bits (65), Expect = 2.0 Identities = 16/29 (55%), Positives = 19/29 (65%) Frame = +3 Query: 207 RRRGRHQGRAPERERHGRPWRRQRAGHRQ 293 RRRGR +GR R R GR RR+R G R+ Sbjct: 27 RRRGRRRGRRRGR-RRGRRRRRRRGGRRR 54
>HSP1_NOTTY (P42143) Sperm protamine P1| Length = 60 Score = 29.6 bits (65), Expect = 2.0 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +3 Query: 207 RRRGRHQGRAPERERHGRPWRRQRAGHRQG 296 RRR R++ + RH R RR+R G R+G Sbjct: 19 RRRSRYRSQRRRYRRHRRSGRRRRRGRRRG 48
>MBP_CHICK (P15720) Myelin basic protein (MBP)| Length = 173 Score = 29.6 bits (65), Expect = 2.0 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +3 Query: 186 GHGEPVPRRRGRHQGRAPERERHGRP 263 G G+ + R H G P+R +HGRP Sbjct: 53 GFGKDIHAARASHVGSIPQRSQHGRP 78
>HSP1_PSECU (P42145) Sperm protamine P1| Length = 68 Score = 29.3 bits (64), Expect = 2.7 Identities = 15/30 (50%), Positives = 20/30 (66%) Frame = +3 Query: 207 RRRGRHQGRAPERERHGRPWRRQRAGHRQG 296 RRR R++GR R R+ R RR+R G R+G Sbjct: 20 RRRSRYRGR---RRRYRRSRRRRRRGRRRG 46
>GLB1_MAIZE (P15590) Globulin-1 S allele precursor (GLB1-S) (7S-like)| Length = 573 Score = 29.3 bits (64), Expect = 2.7 Identities = 15/29 (51%), Positives = 17/29 (58%) Frame = +3 Query: 210 RRGRHQGRAPERERHGRPWRRQRAGHRQG 296 R RH GR ERERHGR R + R+G Sbjct: 524 REERHGGRG-ERERHGREEREKEEEEREG 551
>NQO2_PARDE (P29914) NADH-quinone oxidoreductase chain 2 (EC 1.6.99.5) (NADH| dehydrogenase I, chain 2) (NDH-1, chain 2) Length = 239 Score = 28.5 bits (62), Expect = 4.5 Identities = 21/61 (34%), Positives = 31/61 (50%) Frame = +1 Query: 106 LAFAIDYTPVAQKPTPTPTNGAFSAFWDTASLSRADVAAIKAAHPNVSVMVGLGGDSVQD 285 LA ID + P P P NG FSA + AD+ +A + +V+ + L GDS++ Sbjct: 162 LAALIDRFAAGEVPVPGPQNGRFSAEALGGPTALADLKGGEAHNASVARALRL-GDSIKR 220 Query: 286 I 288 I Sbjct: 221 I 221
>HSP1_MACRU (P42142) Sperm protamine P1| Length = 59 Score = 28.1 bits (61), Expect = 5.9 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = +3 Query: 207 RRRGRHQGRAPERERHGRPWRRQRAGHRQG 296 RRR R + R+ R GR RR R G R+G Sbjct: 17 RRRRRSRYRSQRRRYRGRRRRRSRRGRRRG 46
>HSP1_MACAG (P42137) Sperm protamine P1| Length = 60 Score = 28.1 bits (61), Expect = 5.9 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = +3 Query: 207 RRRGRHQGRAPERERHGRPWRRQRAGHRQG 296 RRR R + R+ R GR RR R G R+G Sbjct: 17 RRRRRSRYRSRRRRSRGRRRRRSRRGRRRG 46
>RPTN_HUMAN (Q6XPR3) Repetin| Length = 784 Score = 28.1 bits (61), Expect = 5.9 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 3/36 (8%) Frame = +3 Query: 189 HGEPVPRRRGRHQGRAPERER---HGRPWRRQRAGH 287 HG+P + R H G++ +++R H +P R+ R H Sbjct: 146 HGQPERQDRDSHHGQSEKQDRDSHHSQPERQDRDSH 181
>CT112_MOUSE (Q6DIB4) Protein C20orf112 homolog| Length = 494 Score = 28.1 bits (61), Expect = 5.9 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = +1 Query: 145 PTPTPTNGAFSAFWDTASLSRADVAAIK 228 PTPTP++ + S TA LS +++A++ Sbjct: 439 PTPTPSSNSTSRTMPTAQLSPTEISAVR 466
>PRT1_SEPOF (P80001) Spermatid-specific protein T1 [Contains:| Spermatid-specific protein T1B; Sperm protamine SP1] Length = 78 Score = 27.7 bits (60), Expect = 7.8 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +3 Query: 207 RRRGRHQGRAPERERHGRPWRRQRAGHRQ 293 RRR R + R+P R R+ R RR+R R+ Sbjct: 32 RRRSRRRSRSPYRRRYRRRRRRRRRRSRR 60
>HSP1_SETBR (P67840) Sperm protamine P1| Length = 60 Score = 27.7 bits (60), Expect = 7.8 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = +3 Query: 207 RRRGRHQGRAPERERHGRPWRRQRAGHRQG 296 RRR R + R+ R GR RR R G R+G Sbjct: 17 RRRRRSRYRSRRRRYRGRRRRRSRRGRRRG 46
>HSP1_ONYUN (P67839) Sperm protamine P1| Length = 60 Score = 27.7 bits (60), Expect = 7.8 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = +3 Query: 207 RRRGRHQGRAPERERHGRPWRRQRAGHRQG 296 RRR R + R+ R GR RR R G R+G Sbjct: 17 RRRRRSRYRSRRRRYRGRRRRRSRRGRRRG 46
>HSP1_DENGO (P67838) Sperm protamine P1| Length = 60 Score = 27.7 bits (60), Expect = 7.8 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = +3 Query: 207 RRRGRHQGRAPERERHGRPWRRQRAGHRQG 296 RRR R + R+ R GR RR R G R+G Sbjct: 17 RRRRRSRYRSRRRRYRGRRRRRSRRGRRRG 46
>MAGI1_HUMAN (Q96QZ7) Membrane-associated guanylate kinase, WW and PDZ| domain-containing protein 1 (BAI1-associated protein 1) (BAP-1) (Membrane-associated guanylate kinase inverted 1) (MAGI-1) (Atrophin-1-interacting protein 3) (AIP3) (WW domain-containi Length = 1491 Score = 27.7 bits (60), Expect = 7.8 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%) Frame = +3 Query: 192 GEPVPRRRGRH----QGRAPERERHGRPWRRQRAGHRQ 293 G P RRR Q R+PER R G P RR ++ R+ Sbjct: 1394 GSPSRRRRSLERLLEQRRSPERRRGGSPERRAKSTDRR 1431 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,883,922 Number of Sequences: 219361 Number of extensions: 429676 Number of successful extensions: 1982 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 1859 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1976 length of database: 80,573,946 effective HSP length: 74 effective length of database: 64,341,232 effective search space used: 1544189568 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
