ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd24j02 |
|---|---|
| Clone Library Name | barley_pub |
>HGL2_ARATH (P46607) Homeobox protein GLABRA2 (Homeobox-leucine zipper protein| ATHB-10) (HD-ZIP protein ATHB-10) Length = 745 Score = 152 bits (384), Expect(2) = 5e-43 Identities = 72/158 (45%), Positives = 114/158 (72%) Frame = +3 Query: 162 GRRSMLKLARRMTENFCAGVSASSAREWSKLDGATGSIGEDVRVMARKSVSEPGEPPGVV 341 GR+S+LK+A+RMT++F ++ASS +W+K+ T G+D+RV +RK++ +PGEP GV+ Sbjct: 506 GRKSVLKMAQRMTQSFYRAIAASSYHQWTKI---TTKTGQDMRVSSRKNLHDPGEPTGVI 562 Query: 342 LSAATSVWVPIAPEKLFDFLRDEQLRAEWDILSNGGPMQEMARIAKGHQNGNSVSLLRAS 521 + A++S+W+P++P LFDF RDE R EWD LSNG +Q +A ++KG GNSV++ Sbjct: 563 VCASSSLWLPVSPALLFDFFRDEARRHEWDALSNGAHVQSIANLSKGQDRGNSVAI---Q 619 Query: 522 AMSANQSSMLILQETCTDASGSIVVYAPVDIPAMQLVM 635 + + + S+ +LQ++ T++ S+VVYAPVDI QLV+ Sbjct: 620 TVKSREKSIWVLQDSSTNSYESVVVYAPVDINTTQLVL 657 Score = 42.0 bits (97), Expect(2) = 5e-43 Identities = 18/39 (46%), Positives = 26/39 (66%) Frame = +2 Query: 2 ASVHQFYRPLLRSGLAFGASRWLATLQRQCECLAILMSS 118 ++V +R L+ +GLAFGA W+ATLQ CE L M++ Sbjct: 453 STVQPLFRSLVNTGLAFGARHWVATLQLHCERLVFFMAT 491
>FWA_ARATH (Q9FVI6) Homeobox protein FWA| Length = 686 Score = 128 bits (322), Expect(2) = 2e-38 Identities = 67/157 (42%), Positives = 102/157 (64%) Frame = +3 Query: 162 GRRSMLKLARRMTENFCAGVSASSAREWSKLDGATGSIGEDVRVMARKSVSEPGEPPGVV 341 G ++KLA+RMT N+ G+++ S +W K+ ++ +++ M RK+V+EPGE G+V Sbjct: 456 GATEIVKLAQRMTLNYYRGITSPSVDKWQKIQ--VENVAQNMSFMIRKNVNEPGELTGIV 513 Query: 342 LSAATSVWVPIAPEKLFDFLRDEQLRAEWDILSNGGPMQEMARIAKGHQNGNSVSLLRAS 521 LSA+TSVW+P+ LF F+ R EWDIL+N M+E RI K ++GN +SLL+ Sbjct: 514 LSASTSVWLPVNQHTLFAFISHLSFRHEWDILTNDTTMEETIRIQKAKRHGNIISLLKIV 573 Query: 522 AMSANQSSMLILQETCTDASGSIVVYAPVDIPAMQLV 632 + ML+LQE DASG++VVYAPV+ +++LV Sbjct: 574 -----NNGMLVLQEIWNDASGAMVVYAPVETNSIELV 605 Score = 50.4 bits (119), Expect(2) = 2e-38 Identities = 21/37 (56%), Positives = 27/37 (72%) Frame = +2 Query: 8 VHQFYRPLLRSGLAFGASRWLATLQRQCECLAILMSS 118 +HQ Y+PL+ G+ GA RWLATLQR CE L+ L S+ Sbjct: 407 IHQLYQPLIGYGIGLGAKRWLATLQRHCESLSTLSST 443
>LCE3A_HUMAN (Q5TA76) Late cornified envelope protein 3A (Late envelope protein| 13) Length = 89 Score = 33.1 bits (74), Expect = 0.72 Identities = 14/36 (38%), Positives = 17/36 (47%) Frame = +2 Query: 260 CNR*HR*GCACYGTKECERAWGATGGGAECRHICMG 367 C R HR C C + C+R G GG + C H G Sbjct: 54 CRRSHR--CRCQSSNSCDRGSGQQGGSSSCGHSSAG 87
>FOXD4_MOUSE (Q60688) Forkhead box protein D4 (Forkhead-related protein FKHL9)| (Forkhead-related transcription factor 5) (FREAC-5) (Transcription factor FKH-2) Length = 444 Score = 32.7 bits (73), Expect = 0.94 Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 7/46 (15%) Frame = -1 Query: 366 PIQMWRHSAPP-------PVAPQARSHSFVP*HAHPHRCYLLHHPA 250 P + R+SAPP P AP RSH P H HP R LL PA Sbjct: 228 PSLLLRYSAPPQPNLAAHPAAPP-RSHPCAPLHPHPMRYLLLAAPA 272
>STRAD_MOUSE (Q60924) Retinoic acid-inducible E3 protein (Hematopoietic-specific| protein E3) Length = 215 Score = 32.7 bits (73), Expect = 0.94 Identities = 26/91 (28%), Positives = 31/91 (34%), Gaps = 4/91 (4%) Frame = -1 Query: 510 GGIPNFHSDAPLQFEPSPAWVLHY*GCPTRHAAVHHAESRTTSQGQ---*APIQMW-RHS 343 G P H A P+ W H+ G PT H + HH TT P W H Sbjct: 16 GAPPTTHWSAHHGAPPTTHWSAHHGGPPTTHWSAHHGGPPTTHWSDHHGAPPTTHWSAHH 75 Query: 342 APPPVAPQARSHSFVP*HAHPHRCYLLHHPA 250 PP + H A P + HH A Sbjct: 76 GAPPTTHWSAHHG-----APPTTHWSAHHGA 101 Score = 31.6 bits (70), Expect = 2.1 Identities = 28/106 (26%), Positives = 37/106 (34%), Gaps = 4/106 (3%) Frame = -1 Query: 555 GSACCSGWHS*HWP*GGIPNFHSDAPLQFEPSPAWVLHY*GCPTRHAAVHHAESRTT--- 385 G+ + W + H G P H A P+ W H+ PT H + HH TT Sbjct: 64 GAPPTTHWSAHH---GAPPTTHWSAHHGAPPTTHWSAHHGAPPTTHWSAHHGAPPTTHWS 120 Query: 384 SQGQ*APIQMW-RHSAPPPVAPQARSHSFVP*HAHPHRCYLLHHPA 250 + P W H PP + H A P + HH A Sbjct: 121 AHHGAPPTTHWSAHHGAPPTTHWSAHHG-----APPTTHWSAHHGA 161 Score = 31.2 bits (69), Expect = 2.7 Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 5/79 (6%) Frame = -1 Query: 555 GSACCSGWHS*HWP*GGIPNFHSDAPLQFEPSPAWVLHY*GCPTRHAAVHHAESRTT--- 385 G+ + W + H G P H A P+ W H+ PT H + HH TT Sbjct: 88 GAPPTTHWSAHH---GAPPTTHWSAHHGAPPTTHWSAHHGAPPTTHWSAHHGAPPTTHWS 144 Query: 384 SQGQ*APIQMW--RHSAPP 334 + P W H APP Sbjct: 145 AHHGAPPTTHWSAHHGAPP 163
>NCOR1_HUMAN (O75376) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR)| Length = 2440 Score = 32.0 bits (71), Expect = 1.6 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 4/116 (3%) Frame = +3 Query: 51 LAPAVGSPLCSASVNAWPSSCPLLQRHLM----NKQLYHKXGRRSMLKLARRMTENFCAG 218 + P V C+ + S L QRH+ + L + R+ + L R + + C G Sbjct: 937 IPPMVSCTPCNIPIGTPVSGYALYQRHIKAMHESALLEEQRQRQEQIDLECRSSTSPC-G 995 Query: 219 VSASSAREWSKLDGATGSIGEDVRVMARKSVSEPGEPPGVVLSAATSVWVPIAPEK 386 S S REW L A + ++ R + P PP ++ ++ + +A EK Sbjct: 996 TSKSPNREWEVLQPAPHQVITNLPEGVRLPTTRPTRPPPPLIPSSKTT---VASEK 1048
>LMO6_HUMAN (O43900) LIM domain only protein 6 (Triple LIM domain protein 6)| Length = 615 Score = 30.4 bits (67), Expect = 4.6 Identities = 17/45 (37%), Positives = 20/45 (44%) Frame = -1 Query: 366 PIQMWRHSAPPPVAPQARSHSFVP*HAHPHRCYLLHHPACSIHAQ 232 P Q R +PPP AP R H H H H + HP+ H Q Sbjct: 494 PAQRRRPRSPPPRAPSRRRH-----HHHNHHHHHNRHPSRRRHYQ 533
>LEU2_XANOR (Q5H4D1) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 482 Score = 30.0 bits (66), Expect = 6.1 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 10/58 (17%) Frame = -2 Query: 527 HSTGPEEGYRISILMPLCNSSH---------LLHGSSITE-DVPLGTQLFITQKVEQL 384 H GPE+G + + +C SH L HG +E + L TQ IT+K++ L Sbjct: 115 HVVGPEQGATLPGMTVVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQCLITKKMKNL 172
>GLMU_BARQU (Q6FZH5) Bifunctional protein glmU [Includes:| UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) (N-acetylglucosamine-1-phosphate uridyltransferase); Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)] Length = 448 Score = 30.0 bits (66), Expect = 6.1 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = -2 Query: 551 QHAALVGTHSTGPEEGYRISILMPLCNSSHLLHGSSITEDVPLGTQLF 408 ++ ++G H+ +S LM + N S++ GS ITEDVP+ + F Sbjct: 376 KYKIVIGDHAFIGSNSALVSPLM-IGNGSYIASGSVITEDVPINSMAF 422
>LEU2_XYLFT (Q87BP9) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 474 Score = 30.0 bits (66), Expect = 6.1 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 10/58 (17%) Frame = -2 Query: 527 HSTGPEEGYRISILMPLCNSSH---------LLHGSSITE-DVPLGTQLFITQKVEQL 384 H GPE+G + + +C SH L HG +E + L TQ +TQK++ + Sbjct: 115 HVIGPEQGATLPGMTVVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQCLVTQKMKNM 172
>LEU2_XYLFA (Q9PAX0) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 474 Score = 30.0 bits (66), Expect = 6.1 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 10/58 (17%) Frame = -2 Query: 527 HSTGPEEGYRISILMPLCNSSH---------LLHGSSITE-DVPLGTQLFITQKVEQL 384 H GPE+G + + +C SH L HG +E + L TQ +TQK++ + Sbjct: 115 HVIGPEQGATLPGMTVVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQCLVTQKMKNM 172
>LEU2_BRUSU (Q8FYG9) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 469 Score = 30.0 bits (66), Expect = 6.1 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 10/69 (14%) Frame = -2 Query: 557 KDQHAALVGTHSTGPEEGYRISILMPLCNSSH---------LLHGSSITE-DVPLGTQLF 408 +D+ +V H GPE+G+ + + +C SH L HG +E + L TQ Sbjct: 104 RDKRQGIV--HIVGPEQGFTLPGMTIVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQTL 161 Query: 407 ITQKVEQLL 381 I +K + +L Sbjct: 162 IQKKAKNML 170
>LEU2_BRUME (Q8YJC9) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 469 Score = 30.0 bits (66), Expect = 6.1 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 10/69 (14%) Frame = -2 Query: 557 KDQHAALVGTHSTGPEEGYRISILMPLCNSSH---------LLHGSSITE-DVPLGTQLF 408 +D+ +V H GPE+G+ + + +C SH L HG +E + L TQ Sbjct: 104 RDKRQGIV--HIVGPEQGFTLPGMTIVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQTL 161 Query: 407 ITQKVEQLL 381 I +K + +L Sbjct: 162 IQKKAKNML 170
>LEU2_AGRT5 (Q8UBY9) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 469 Score = 30.0 bits (66), Expect = 6.1 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 10/69 (14%) Frame = -2 Query: 557 KDQHAALVGTHSTGPEEGYRISILMPLCNSSH---------LLHGSSITE-DVPLGTQLF 408 +D+ +V H GPE+G+ + + +C SH L HG +E + L TQ Sbjct: 104 RDKRQGIV--HIVGPEQGFTLPGMTIVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQTL 161 Query: 407 ITQKVEQLL 381 I +K + +L Sbjct: 162 IQKKAKNML 170
>HEM1_PSEPK (Q88PW6) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR)| Length = 425 Score = 30.0 bits (66), Expect = 6.1 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 10/71 (14%) Frame = +3 Query: 399 LRDEQLRAEWDILSNGG-PMQEMARIAKGHQN----GNSVSLLRASAMS-----ANQSSM 548 LRDE+L+ +L+NGG P +A++A+G N SV L + SA A + Sbjct: 353 LRDEELQKALRLLANGGNPEDVLAQLARGLTNKLLHAPSVQLKKLSAEGRLDALAMAQEL 412 Query: 549 LILQETCTDAS 581 L E TD S Sbjct: 413 FALNEGSTDKS 423
>SUFU_MOUSE (Q9Z0P7) Suppressor of fused homolog| Length = 484 Score = 30.0 bits (66), Expect = 6.1 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Frame = -2 Query: 488 LMPLCNSSHLLHG-----SSITEDVPLGTQLFITQKVEQLLRGNRHPYRCGG 348 L+PLC LLHG SIT D+ + F++ VE HPY G Sbjct: 380 LIPLCLRGRLLHGRHFTYKSITGDMAI---TFVSTGVEGAFATEEHPYAAHG 428
>SUFU_HUMAN (Q9UMX1) Suppressor of fused homolog (SUFUH)| Length = 484 Score = 30.0 bits (66), Expect = 6.1 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Frame = -2 Query: 488 LMPLCNSSHLLHG-----SSITEDVPLGTQLFITQKVEQLLRGNRHPYRCGG 348 L+PLC LLHG SIT D+ + F++ VE HPY G Sbjct: 380 LIPLCLRGRLLHGRHFTYKSITGDMAI---TFVSTGVEGAFATEEHPYAAHG 428
>NCOR1_MOUSE (Q60974) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (Retinoid X| receptor-interacting protein 13) (RIP13) Length = 2453 Score = 29.6 bits (65), Expect = 7.9 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 4/116 (3%) Frame = +3 Query: 51 LAPAVGSPLCSASVNAWPSSCPLLQRHLM----NKQLYHKXGRRSMLKLARRMTENFCAG 218 + P V C+ + S L QRH+ + L + R+ + L R + + C+ Sbjct: 949 IPPMVSCTPCNIPIGTPVSGYALYQRHIKAMHESALLEEQRQRQEQVDLECRSSTSPCS- 1007 Query: 219 VSASSAREWSKLDGATGSIGEDVRVMARKSVSEPGEPPGVVLSAATSVWVPIAPEK 386 S S REW L A + ++ R + P PP ++ ++ + +A EK Sbjct: 1008 TSKSPNREWEVLQPAPHQVITNLPEGVRLPTTRPTRPPPPLIPSSKTT---VASEK 1060
>SDS3_MOUSE (Q8BR65) Sin3 histone deacetylase corepressor complex component| SDS3 (Suppressor of defective silencing 3 protein homolog) Length = 328 Score = 29.6 bits (65), Expect = 7.9 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -3 Query: 301 RAITRTSSPMLPVAPSSLLHSRADDALTPAQKF 203 R + + SP P +PSS H A A +PAQ+F Sbjct: 221 RTLNKLKSPKRPASPSSPEHLPATPAESPAQRF 253
>SDS3_HUMAN (Q9H7L9) Sin3 histone deacetylase corepressor complex component| SDS3 (Suppressor of defective silencing 3 protein homolog) Length = 328 Score = 29.6 bits (65), Expect = 7.9 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -3 Query: 301 RAITRTSSPMLPVAPSSLLHSRADDALTPAQKF 203 R + + SP P +PSS H A A +PAQ+F Sbjct: 221 RTLNKLKSPKRPASPSSPEHLPATPAESPAQRF 253
>LONM_HUMAN (P36776) Lon protease homolog, mitochondrial precursor (EC| 3.4.21.-) (Lon protease-like protein) (LONP) (LONHs) Length = 959 Score = 29.6 bits (65), Expect = 7.9 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Frame = -3 Query: 451 GPPLLRMSHSARSCSSRRKSNNFSGAIGTHTDVAALS----TTPGGSPGSLTLFRAITRT 284 GPP + + ARS + F ++G TDVA + T G PG + T+T Sbjct: 523 GPPGVGKTSIARSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKT 582 Query: 283 SSPML 269 +P++ Sbjct: 583 ENPLI 587
>CYAA_USTMA (P49606) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)| (Adenylyl cyclase) Length = 2493 Score = 29.6 bits (65), Expect = 7.9 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Frame = +3 Query: 300 RKSVSEPGEPPGVVLSAATSVWVPIAPEKLFDFLRDEQLRAEWDILSNGGPMQEMARIA- 476 RKS + G+ P A S W + P+K+ D+LRD+ + E D + Q A +A Sbjct: 718 RKSSASSGQEPSSSWMAPDS-WA-VQPDKMRDYLRDDNVGEEED--DDDDQHQARAALAT 773 Query: 477 KGHQNGNS--VSLLRASAMSANQSS 545 G + G+S +S AS+M S+ Sbjct: 774 DGKRRGSSSGISSTHASSMFRTSST 798
>LEU2_RHIME (Q92L76) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 469 Score = 29.6 bits (65), Expect = 7.9 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 10/59 (16%) Frame = -2 Query: 527 HSTGPEEGYRISILMPLCNSSH---------LLHGSSITE-DVPLGTQLFITQKVEQLL 381 H GPE+G+ + + +C SH L HG +E + L TQ I +K + +L Sbjct: 112 HIVGPEQGFTLPGMTIVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNML 170 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 107,660,339 Number of Sequences: 219361 Number of extensions: 2478074 Number of successful extensions: 8327 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 7832 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8312 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5995743495 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
