ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd24j01 |
|---|---|
| Clone Library Name | barley_pub |
>PP2CA_RAT (P20650) Protein phosphatase 2C isoform alpha (EC 3.1.3.16)| (PP2C-alpha) (IA) (Protein phosphatase 1A) Length = 382 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Frame = +2 Query: 395 YGFSLVRGKTNHPMEDFHVAELAEVKGNEL-GLFAIYDGHLGDTVPAYLQKNLFPNILNE 571 YG S ++G MED H A + G E FA+YDGH G V Y ++L +I N Sbjct: 24 YGLSSMQG-WRVEMEDAHTAVIGLPSGLETWSFFAVYDGHAGSQVAKYCCEHLLDHITNN 82 Query: 572 EEF 580 ++F Sbjct: 83 QDF 85
>PP2CA_RABIT (P35814) Protein phosphatase 2C isoform alpha (EC 3.1.3.16)| (PP2C-alpha) (IA) (Protein phosphatase 1A) Length = 382 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Frame = +2 Query: 395 YGFSLVRGKTNHPMEDFHVAELAEVKGNEL-GLFAIYDGHLGDTVPAYLQKNLFPNILNE 571 YG S ++G MED H A + G E FA+YDGH G V Y ++L +I N Sbjct: 24 YGLSSMQG-WRVEMEDAHTAVIGLPSGLETWSFFAVYDGHAGSQVAKYCCEHLLDHITNN 82 Query: 572 EEF 580 ++F Sbjct: 83 QDF 85
>PP2CA_MOUSE (P49443) Protein phosphatase 2C isoform alpha (EC 3.1.3.16)| (PP2C-alpha) (IA) (Protein phosphatase 1A) Length = 382 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Frame = +2 Query: 395 YGFSLVRGKTNHPMEDFHVAELAEVKGNEL-GLFAIYDGHLGDTVPAYLQKNLFPNILNE 571 YG S ++G MED H A + G E FA+YDGH G V Y ++L +I N Sbjct: 24 YGLSSMQG-WRVEMEDAHTAVIGLPSGLETWSFFAVYDGHAGSQVAKYCCEHLLDHITNN 82 Query: 572 EEF 580 ++F Sbjct: 83 QDF 85
>PP2CA_BOVIN (O62829) Protein phosphatase 2C isoform alpha (EC 3.1.3.16)| (PP2C-alpha) Length = 382 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Frame = +2 Query: 395 YGFSLVRGKTNHPMEDFHVAELAEVKGNEL-GLFAIYDGHLGDTVPAYLQKNLFPNILNE 571 YG S ++G MED H A + G E FA+YDGH G V Y ++L +I N Sbjct: 24 YGLSSMQG-WRVEMEDAHTAVIGLPSGLETWSFFAVYDGHAGSQVAKYCCEHLLDHITNN 82 Query: 572 EEF 580 ++F Sbjct: 83 QDF 85
>PP2CB_BOVIN (O62830) Protein phosphatase 2C isoform beta (EC 3.1.3.16)| (PP2C-beta) Length = 387 Score = 41.2 bits (95), Expect = 0.002 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = +2 Query: 395 YGFSLVRGKTNHPMEDFHVAELAEVKGNE-LGLFAIYDGHLGDTVPAYLQKNLFPNILNE 571 YG S ++G MED H A + G E FA+YDGH G V Y +L +I N Sbjct: 24 YGLSSMQG-WRVEMEDAHTAVVGIPHGLEDWSFFAVYDGHAGSRVANYCSTHLLEHITNN 82 Query: 572 EEF 580 E+F Sbjct: 83 EDF 85
>PP2CA_HUMAN (P35813) Protein phosphatase 2C isoform alpha (EC 3.1.3.16)| (PP2C-alpha) (IA) (Protein phosphatase 1A) Length = 382 Score = 40.8 bits (94), Expect = 0.003 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Frame = +2 Query: 395 YGFSLVRGKTNHPMEDFHVAELAEVKGNEL-GLFAIYDGHLGDTVPAYLQKNLFPNILNE 571 YG S ++G MED H A + G E FA+YDGH G V Y ++L +I N Sbjct: 24 YGLSSMQG-WRVEMEDAHTAVIGLPSGLESWSFFAVYDGHAGSQVAKYCCEHLLDHITNN 82 Query: 572 EEF 580 ++F Sbjct: 83 QDF 85
>PP2CB_RAT (P35815) Protein phosphatase 2C isoform beta (EC 3.1.3.16)| (PP2C-beta) (IA) (Protein phosphatase 1B) Length = 390 Score = 38.9 bits (89), Expect = 0.011 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +2 Query: 395 YGFSLVRGKTNHPMEDFHVAELAEVKGNE-LGLFAIYDGHLGDTVPAYLQKNLFPNILNE 571 YG S ++G MED H A + G E FA+YDGH G V Y +L +I Sbjct: 24 YGLSSMQG-WRVEMEDAHTAVVGIPHGLEDWSFFAVYDGHAGSRVANYCSTHLLEHITTN 82 Query: 572 EEF 580 E+F Sbjct: 83 EDF 85
>PP2CB_HUMAN (O75688) Protein phosphatase 2C isoform beta (EC 3.1.3.16)| (PP2C-beta) Length = 479 Score = 38.9 bits (89), Expect = 0.011 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +2 Query: 395 YGFSLVRGKTNHPMEDFHVAELAEVKGNE-LGLFAIYDGHLGDTVPAYLQKNLFPNILNE 571 YG S ++G MED H A + G E FA+YDGH G V Y +L +I Sbjct: 24 YGLSSMQG-WRVEMEDAHTAVVGIPHGLEDWSFFAVYDGHAGSRVANYCSTHLLEHITTN 82 Query: 572 EEF 580 E+F Sbjct: 83 EDF 85
>PP2CB_MOUSE (P36993) Protein phosphatase 2C isoform beta (EC 3.1.3.16)| (PP2C-beta) (IA) (Protein phosphatase 1B) Length = 390 Score = 38.5 bits (88), Expect = 0.015 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +2 Query: 395 YGFSLVRGKTNHPMEDFHVAELAEVKG-NELGLFAIYDGHLGDTVPAYLQKNLFPNILNE 571 YG S ++G MED H A + G + FA+YDGH G V Y +L +I Sbjct: 24 YGLSSMQG-WRVEMEDAHTAVVGIPHGLDNWSFFAVYDGHAGSRVANYCSTHLLEHITTN 82 Query: 572 EEF 580 E+F Sbjct: 83 EDF 85
>PP2C2_CAEEL (P49596) Probable protein phosphatase 2C T23F11.1 (EC 3.1.3.16)| (PP2C) Length = 356 Score = 35.4 bits (80), Expect = 0.12 Identities = 18/49 (36%), Positives = 25/49 (51%) Frame = +2 Query: 434 MEDFHVAELAEVKGNELGLFAIYDGHLGDTVPAYLQKNLFPNILNEEEF 580 MED H L+ + FA+YDGH G V Y NL ++ ++EF Sbjct: 36 MEDAHTHLLSLPDDPKCAFFAVYDGHGGSKVSQYSGINLHKKVVAQKEF 84
>PP2C2_SCHPO (Q09172) Protein phosphatase 2C homolog 2 (EC 3.1.3.16) (PP2C-2)| Length = 370 Score = 34.3 bits (77), Expect = 0.28 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%) Frame = +2 Query: 434 MEDFHVAELAEVKGNE----LGLFAIYDGHLGDTVPAYLQKNLFPNILNEEEFW 583 MED H A L N F ++DGH GD V Y +++L I ++ FW Sbjct: 36 MEDAHCALLNFTDSNSSNPPTSFFGVFDGHGGDRVAKYCRQHLPDIIKSQPSFW 89
>PP2C1_SCHPO (P40371) Protein phosphatase 2C homolog 1 (EC 3.1.3.16) (PP2C-1)| Length = 347 Score = 34.3 bits (77), Expect = 0.28 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = +2 Query: 434 MEDFHVAELAEVKGNEL-GLFAIYDGHLGDTVPAYLQKNLFPNILNE 571 MED H+ L + GN+ G A+YDGH G Y QKNL +L + Sbjct: 86 MEDTHIC-LYDFGGNQDDGFVAVYDGHAGIQASDYCQKNLHKVLLEK 131
>PP2C3_SCHPO (Q09173) Protein phosphatase 2C homolog 3 (EC 3.1.3.16) (PP2C-3)| Length = 414 Score = 34.3 bits (77), Expect = 0.28 Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 4/63 (6%) Frame = +2 Query: 395 YGFSLVRGKTNHPMEDFHVA----ELAEVKGNELGLFAIYDGHLGDTVPAYLQKNLFPNI 562 YG S ++G MED H A E + VK + + FA+YDGH GD V + NL P I Sbjct: 24 YGLSSMQG-WRISMEDAHSAILSMECSAVK-DPVDFFAVYDGHGGDKVAKWCGSNL-PQI 80 Query: 563 LNE 571 L + Sbjct: 81 LEK 83
>PP2C3_YEAST (P34221) Protein phosphatase 2C homolog 3 (EC 3.1.3.16) (PP2C-3)| Length = 468 Score = 33.1 bits (74), Expect = 0.62 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%) Frame = +2 Query: 434 MEDFHVAE---LAEVKGNELGLFAIYDGHLGDTVPAYLQKNLFPNILNEEEF 580 MED H+ E LAE L + I+DGH G +V + + + +E F Sbjct: 36 MEDAHIVEPNLLAESDEEHLAFYGIFDGHGGSSVAEFCGSKMISILKKQESF 87
>PP2C5_YEAST (Q12511) Protein phosphatase 2C homolog 5 (EC 3.1.3.16) (PP2C-5)| Length = 572 Score = 31.6 bits (70), Expect = 1.8 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Frame = +2 Query: 395 YGFSLVRGKTNHPMEDFHVAELAEVK---------GNELGLFAIYDGHLGDTVPAYLQKN 547 + + + + +NHP+ED HV ++ + +L F I+DGH G L K+ Sbjct: 152 FRYDVAQLPSNHPIEDDHVEQIITIPIESEDGKSIEKDLYFFGIFDGHGGPFTSEKLSKD 211 Query: 548 L 550 L Sbjct: 212 L 212
>RHLB_XANAC (Q8PFZ3) ATP-dependent RNA helicase rhlB (EC 3.6.1.-)| Length = 571 Score = 30.4 bits (67), Expect = 4.0 Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 15/86 (17%) Frame = -3 Query: 257 RELEQDRAAEGRRI---IGSPRRQRDPSRDTTRPGFGCNGLPKPR-----------LFHG 120 RE + RAAE +R G P R S R G G +G P+PR Sbjct: 419 REAREQRAAEEQRRGGGRGGPGGSRSGSGGGRRDGAGADGKPRPRRKPRVEGQAPAAAAS 478 Query: 119 TLHPIDPAVDELGDSQG-AEVEESSR 45 T HP+ AV S G A+ E + R Sbjct: 479 TEHPVVAAVAAQAPSAGVADAERAPR 504
>PP2C_LEICH (P36982) Protein phosphatase 2C (EC 3.1.3.16) (PP2C)| Length = 406 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%) Frame = +2 Query: 395 YGFSLVRGKTN------HPMEDFHVAELAEVKGNELGLFAIYDGHLGDTVPAYLQK 544 YG ++ R +N MED H+ L + G F ++DGH+ D YL++ Sbjct: 17 YGNAIFRCGSNCVNGYRETMEDAHLTYLTD----SWGFFGVFDGHVNDQCSQYLER 68
>RHLB_YERPS (Q66G19) ATP-dependent RNA helicase rhlB (EC 3.6.1.-)| Length = 428 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/41 (41%), Positives = 21/41 (51%) Frame = -3 Query: 284 LVNSLPAPTRELEQDRAAEGRRIIGSPRRQRDPSRDTTRPG 162 L+ LPAP R L + R G R +PRR P + RPG Sbjct: 389 LLTDLPAPKR-LARTRTGNGPRRNSAPRRSGAPRNNRKRPG 428
>RHLB_YERPE (Q8ZAD8) ATP-dependent RNA helicase rhlB (EC 3.6.1.-)| Length = 428 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/41 (41%), Positives = 21/41 (51%) Frame = -3 Query: 284 LVNSLPAPTRELEQDRAAEGRRIIGSPRRQRDPSRDTTRPG 162 L+ LPAP R L + R G R +PRR P + RPG Sbjct: 389 LLTDLPAPKR-LARTRTGNGPRRNSAPRRSGAPRNNRKRPG 428
>PKHA6_HUMAN (Q9Y2H5) Pleckstrin homology domain-containing family A member 6| (Phosphoinositol 3-phosphate-binding protein 3) (PEPP-3) Length = 1048 Score = 30.0 bits (66), Expect = 5.2 Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 9/88 (10%) Frame = -3 Query: 278 NSLPAPTRELEQDRAAEGRRIIGSPRRQRDPSRDTTR--PGFGCNGL---PKPRLFHGTL 114 NSLP P E + +GR G + +R P R + P NGL P+P G+ Sbjct: 196 NSLPKPEPEAKTRGEGDGR---GCEKAERRPERPEVKKEPPVKANGLPAGPEPASEPGSP 252 Query: 113 HPIDPAVDELGDS----QGAEVEESSRP 42 +P P V G+ G + SRP Sbjct: 253 YPEGPRVPGGGEQPAQPNGWQYHSPSRP 280
>PEX9_YARLI (P45817) Peroxisomal biogenesis factor 9 (Peroxin-9) (Peroxisomal| protein PAY2) Length = 404 Score = 29.3 bits (64), Expect = 8.9 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = +3 Query: 3 RLISAQLLRFHRSRPRALLHLRPLGISELVHRWIDRVQSSMKEARFW 143 R++ + +F R P+ L+HL LG LVH DRV W Sbjct: 297 RVVKVLVDKFPRRLPKRLVHLVHLGRGSLVHCRCDRVCQQRGCCHLW 343
>SC24D_HUMAN (O94855) Protein transport protein Sec24D (SEC24-related protein D)| Length = 1032 Score = 29.3 bits (64), Expect = 8.9 Identities = 16/56 (28%), Positives = 27/56 (48%) Frame = -3 Query: 278 NSLPAPTRELEQDRAAEGRRIIGSPRRQRDPSRDTTRPGFGCNGLPKPRLFHGTLH 111 +S+P+P + +E DRA+ G ++ + R + P TT G PR T + Sbjct: 262 DSIPSPIQVIENDRASRGGQVYATNTRGQIPPLVTTDCMIQDQGNASPRFIRCTTY 317
>SYFA_ZYMMO (Q5NMC2) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 366 Score = 29.3 bits (64), Expect = 8.9 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 9/40 (22%) Frame = -3 Query: 146 LPKPRLFHGTLHPIDPAVDELGD---------SQGAEVEE 54 LP P++ G+LHP+ +DEL + + G E+E+ Sbjct: 96 LPSPKMPKGSLHPVSQVMDELAEIFADLGFAVASGPEIED 135 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,575,530 Number of Sequences: 219361 Number of extensions: 1398939 Number of successful extensions: 3982 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3885 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3982 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
