ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd24h20 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY106445.1| Zea mays PCO092755 mRNA sequence Length = 1052 Score = 412 bits (208), Expect = e-112 Identities = 417/485 (85%), Gaps = 5/485 (1%) Strand = Plus / Plus Query: 78 atccaaggtgcgctgggcgcagcttttccttcgcaggccaccttccctcattatgccatc 137 |||||||||| || ||||||||||||||||| || |||||||||||||||||||||||| Sbjct: 502 atccaaggtggactcggcgcagcttttccttctcatgccaccttccctcattatgccatc 561 Query: 138 ccacagggcctcccttaccacgtctatgggtactctccttattctccagactacggtttt 197 ||||| ||||| || | ||| ||||||||||||||||| ||| | |||||||| |||| | Sbjct: 562 ccacaaggccttcccttccatgtctatgggtactctccatataccccagactatggttat 621 Query: 198 cccgcaaactactacaacatctatggaggaaaccagtacccattttacggaggagcagga 257 || |||||| |||||| || ||||||||| |||||||| ||||| ||||||||| | Sbjct: 622 ccaacaaacttctacaatatatatggaggagctcagtacccgttttatggaggagcaaca 681 Query: 258 actggcatggtgactggaaccagtcccttctatccatatttccagtttgggcaatccgga 317 ||||||||||||| ||||| |||||||| |||||||||||||| |||||||| || ||| Sbjct: 682 gctggcatggtgacaggaacaagtcccttttatccatatttccaatttgggcagtcagga 741 Query: 318 agcactacgcccaactatgcaactggacaggggtacaacatg---caatacccacagatg 374 | |||||| |||||||| ||| |||||| || |||||| || ||||||||||| ||| Sbjct: 742 aacactactaccaactatacaagtggacaaggctacaacttgcaacaatacccacaaatg 801 Query: 375 tttcccttctcaactgtggcttctacagccgctgctgtaacaggctttgcacagcaatat 434 || | |||||||||||| |||||||||| || ||||| || |||||||| ||||||||| Sbjct: 802 ttccacttctcaactgtatcttctacagctgcagctgtgaccggctttgctcagcaatat 861 Query: 435 ggagggccattgtcacttgcagcgagtcctcaagcccaagcagtgtgtatccccattaaa 494 ||||| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||| Sbjct: 862 ggaggaccattgtcactagcagcaagccctcaagcccaagcagtgtgtatccccattaaa 921 Query: 495 caggcatgactatggctctcacagcaccaaccttgccaagtccaactcaggctgctcatc 554 |||||||||||||||| |||||||| ||||||| ||| |||||| || | |||||||| Sbjct: 922 caggcatgactatggcactcacagctccaacct--gcaactccaacacaaggtgctcatc 979 Query: 555 cttac 559 ||||| Sbjct: 980 cttac 984
>ref|NM_190125.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 930 Score = 323 bits (163), Expect = 4e-85 Identities = 205/219 (93%) Strand = Plus / Plus Query: 259 ctggcatggtgactggaaccagtcccttctatccatatttccagtttgggcaatccggaa 318 |||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| |||| Sbjct: 566 ctggcatggtgactggaagcagccccttttatccatatttccagtttgggcaatcaggaa 625 Query: 319 gcactacgcccaactatgcaactggacaggggtacaacatgcaatacccacagatgtttc 378 ||||||| |||||||||||| |||||| || |||||| ||||||||||||||||||||| Sbjct: 626 gcactacaaccaactatgcaagtggacaaggctacaacttgcaatacccacagatgtttc 685 Query: 379 ccttctcaactgtggcttctacagccgctgctgtaacaggctttgcacagcaatatggag 438 |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct: 686 acttctcaactgtggcttctacagctgctgctgtaacaggttttgcacagcaatatggag 745 Query: 439 ggccattgtcacttgcagcgagtcctcaagcccaagcag 477 |||||||||| |||||||||||||||||||||||||||| Sbjct: 746 ggccattgtctcttgcagcgagtcctcaagcccaagcag 784 Score = 234 bits (118), Expect = 3e-58 Identities = 216/249 (86%), Gaps = 6/249 (2%) Strand = Plus / Plus Query: 1 ggcctccaaccccacagcacgggggtgctaggagctttcgagtgatgaagtcctttgggc 60 ||||||||||||||||||| || || |||||||||||| | ||||||||||||||| | | Sbjct: 296 ggcctccaaccccacagcatggaggggctaggagctttagggtgatgaagtcctttagcc 355 Query: 61 agcagcaggctgcggggatccaaggtgcgctgggcgcagcttttccttcgcaggccacct 120 ||||| || ||||||||||||| |||||||||||||||||||| || ||||||| Sbjct: 356 agcag------gcagggatccaaggtggtctgggcgcagcttttccttctcacgccacct 409 Query: 121 tccctcattatgccatcccacagggcctcccttaccacgtctatgggtactctccttatt 180 |||| |||||||| |||||||| || ||||||||||| ||||||||||||||||| |||| Sbjct: 410 tcccccattatgctatcccacaaggtctcccttaccatgtctatgggtactctccctatt 469 Query: 181 ctccagactacggttttcccgcaaactactacaacatctatggaggaaaccagtacccat 240 ||||||||||| ||| |||| ||||||||||||||||||| |||||| || ||||||| Sbjct: 470 ctccagactacagttatcccacaaactactacaacatctacggaggagctcaatacccat 529 Query: 241 tttacggag 249 |||| |||| Sbjct: 530 tttatggag 538
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 323 bits (163), Expect = 4e-85 Identities = 205/219 (93%) Strand = Plus / Plus Query: 259 ctggcatggtgactggaaccagtcccttctatccatatttccagtttgggcaatccggaa 318 |||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| |||| Sbjct: 38045679 ctggcatggtgactggaagcagccccttttatccatatttccagtttgggcaatcaggaa 38045738 Query: 319 gcactacgcccaactatgcaactggacaggggtacaacatgcaatacccacagatgtttc 378 ||||||| |||||||||||| |||||| || |||||| ||||||||||||||||||||| Sbjct: 38045739 gcactacaaccaactatgcaagtggacaaggctacaacttgcaatacccacagatgtttc 38045798 Query: 379 ccttctcaactgtggcttctacagccgctgctgtaacaggctttgcacagcaatatggag 438 |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct: 38045799 acttctcaactgtggcttctacagctgctgctgtaacaggttttgcacagcaatatggag 38045858 Query: 439 ggccattgtcacttgcagcgagtcctcaagcccaagcag 477 |||||||||| |||||||||||||||||||||||||||| Sbjct: 38045859 ggccattgtctcttgcagcgagtcctcaagcccaagcag 38045897 Score = 153 bits (77), Expect = 8e-34 Identities = 104/113 (92%) Strand = Plus / Plus Query: 475 cagtgtgtatccccattaaacaggcatgactatggctctcacagcaccaaccttgccaag 534 |||||||| |||||||||||||||||||||||||||||||||||| || || ||||| | Sbjct: 38046361 cagtgtgtgtccccattaaacaggcatgactatggctctcacagctcctactttgccgac 38046420 Query: 535 tccaactcaggctgctcatccttaccggctcgtcccctctcactttgctgtgt 587 ||||||||||||||||||||||||||||||| | ||||| ||||||||||||| Sbjct: 38046421 tccaactcaggctgctcatccttaccggctcattccctcgcactttgctgtgt 38046473 Score = 127 bits (64), Expect = 4e-26 Identities = 123/143 (86%), Gaps = 6/143 (4%) Strand = Plus / Plus Query: 27 gctaggagctttcgagtgatgaagtcctttgggcagcagcaggctgcggggatccaaggt 86 |||||||||||| | ||||||||||||||| | |||||| || |||||||||||| Sbjct: 38042821 gctaggagctttagggtgatgaagtcctttagccagcag------gcagggatccaaggt 38042874 Query: 87 gcgctgggcgcagcttttccttcgcaggccaccttccctcattatgccatcccacagggc 146 | |||||||||||||||||||| || ||||||||||| |||||||| |||||||| || Sbjct: 38042875 ggtctgggcgcagcttttccttctcacgccaccttcccccattatgctatcccacaaggt 38042934 Query: 147 ctcccttaccacgtctatgggta 169 ||||||||||| ||||||||||| Sbjct: 38042935 ctcccttaccatgtctatgggta 38042957 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 166 ggtactctccttattctccagactacggttttccc 200 |||||||||| ||||||||||||||| ||| |||| Sbjct: 38043330 ggtactctccctattctccagactacagttatccc 38043364 Score = 44.1 bits (22), Expect = 0.51 Identities = 40/46 (86%) Strand = Plus / Plus Query: 204 aactactacaacatctatggaggaaaccagtacccattttacggag 249 ||||||||||||||||| |||||| || ||||||||||| |||| Sbjct: 38045606 aactactacaacatctacggaggagctcaatacccattttatggag 38045651
>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698A10 Length = 137348 Score = 323 bits (163), Expect = 4e-85 Identities = 205/219 (93%) Strand = Plus / Plus Query: 259 ctggcatggtgactggaaccagtcccttctatccatatttccagtttgggcaatccggaa 318 |||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| |||| Sbjct: 126623 ctggcatggtgactggaagcagccccttttatccatatttccagtttgggcaatcaggaa 126682 Query: 319 gcactacgcccaactatgcaactggacaggggtacaacatgcaatacccacagatgtttc 378 ||||||| |||||||||||| |||||| || |||||| ||||||||||||||||||||| Sbjct: 126683 gcactacaaccaactatgcaagtggacaaggctacaacttgcaatacccacagatgtttc 126742 Query: 379 ccttctcaactgtggcttctacagccgctgctgtaacaggctttgcacagcaatatggag 438 |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct: 126743 acttctcaactgtggcttctacagctgctgctgtaacaggttttgcacagcaatatggag 126802 Query: 439 ggccattgtcacttgcagcgagtcctcaagcccaagcag 477 |||||||||| |||||||||||||||||||||||||||| Sbjct: 126803 ggccattgtctcttgcagcgagtcctcaagcccaagcag 126841 Score = 153 bits (77), Expect = 8e-34 Identities = 104/113 (92%) Strand = Plus / Plus Query: 475 cagtgtgtatccccattaaacaggcatgactatggctctcacagcaccaaccttgccaag 534 |||||||| |||||||||||||||||||||||||||||||||||| || || ||||| | Sbjct: 127305 cagtgtgtgtccccattaaacaggcatgactatggctctcacagctcctactttgccgac 127364 Query: 535 tccaactcaggctgctcatccttaccggctcgtcccctctcactttgctgtgt 587 ||||||||||||||||||||||||||||||| | ||||| ||||||||||||| Sbjct: 127365 tccaactcaggctgctcatccttaccggctcattccctcgcactttgctgtgt 127417 Score = 127 bits (64), Expect = 4e-26 Identities = 123/143 (86%), Gaps = 6/143 (4%) Strand = Plus / Plus Query: 27 gctaggagctttcgagtgatgaagtcctttgggcagcagcaggctgcggggatccaaggt 86 |||||||||||| | ||||||||||||||| | |||||| || |||||||||||| Sbjct: 123765 gctaggagctttagggtgatgaagtcctttagccagcag------gcagggatccaaggt 123818 Query: 87 gcgctgggcgcagcttttccttcgcaggccaccttccctcattatgccatcccacagggc 146 | |||||||||||||||||||| || ||||||||||| |||||||| |||||||| || Sbjct: 123819 ggtctgggcgcagcttttccttctcacgccaccttcccccattatgctatcccacaaggt 123878 Query: 147 ctcccttaccacgtctatgggta 169 ||||||||||| ||||||||||| Sbjct: 123879 ctcccttaccatgtctatgggta 123901 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 166 ggtactctccttattctccagactacggttttccc 200 |||||||||| ||||||||||||||| ||| |||| Sbjct: 124274 ggtactctccctattctccagactacagttatccc 124308 Score = 44.1 bits (22), Expect = 0.51 Identities = 40/46 (86%) Strand = Plus / Plus Query: 204 aactactacaacatctatggaggaaaccagtacccattttacggag 249 ||||||||||||||||| |||||| || ||||||||||| |||| Sbjct: 126550 aactactacaacatctacggaggagctcaatacccattttatggag 126595
>dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0471B04 Length = 138025 Score = 323 bits (163), Expect = 4e-85 Identities = 205/219 (93%) Strand = Plus / Plus Query: 259 ctggcatggtgactggaaccagtcccttctatccatatttccagtttgggcaatccggaa 318 |||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| |||| Sbjct: 13713 ctggcatggtgactggaagcagccccttttatccatatttccagtttgggcaatcaggaa 13772 Query: 319 gcactacgcccaactatgcaactggacaggggtacaacatgcaatacccacagatgtttc 378 ||||||| |||||||||||| |||||| || |||||| ||||||||||||||||||||| Sbjct: 13773 gcactacaaccaactatgcaagtggacaaggctacaacttgcaatacccacagatgtttc 13832 Query: 379 ccttctcaactgtggcttctacagccgctgctgtaacaggctttgcacagcaatatggag 438 |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct: 13833 acttctcaactgtggcttctacagctgctgctgtaacaggttttgcacagcaatatggag 13892 Query: 439 ggccattgtcacttgcagcgagtcctcaagcccaagcag 477 |||||||||| |||||||||||||||||||||||||||| Sbjct: 13893 ggccattgtctcttgcagcgagtcctcaagcccaagcag 13931 Score = 153 bits (77), Expect = 8e-34 Identities = 104/113 (92%) Strand = Plus / Plus Query: 475 cagtgtgtatccccattaaacaggcatgactatggctctcacagcaccaaccttgccaag 534 |||||||| |||||||||||||||||||||||||||||||||||| || || ||||| | Sbjct: 14395 cagtgtgtgtccccattaaacaggcatgactatggctctcacagctcctactttgccgac 14454 Query: 535 tccaactcaggctgctcatccttaccggctcgtcccctctcactttgctgtgt 587 ||||||||||||||||||||||||||||||| | ||||| ||||||||||||| Sbjct: 14455 tccaactcaggctgctcatccttaccggctcattccctcgcactttgctgtgt 14507 Score = 127 bits (64), Expect = 4e-26 Identities = 123/143 (86%), Gaps = 6/143 (4%) Strand = Plus / Plus Query: 27 gctaggagctttcgagtgatgaagtcctttgggcagcagcaggctgcggggatccaaggt 86 |||||||||||| | ||||||||||||||| | |||||| || |||||||||||| Sbjct: 10855 gctaggagctttagggtgatgaagtcctttagccagcag------gcagggatccaaggt 10908 Query: 87 gcgctgggcgcagcttttccttcgcaggccaccttccctcattatgccatcccacagggc 146 | |||||||||||||||||||| || ||||||||||| |||||||| |||||||| || Sbjct: 10909 ggtctgggcgcagcttttccttctcacgccaccttcccccattatgctatcccacaaggt 10968 Query: 147 ctcccttaccacgtctatgggta 169 ||||||||||| ||||||||||| Sbjct: 10969 ctcccttaccatgtctatgggta 10991 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 166 ggtactctccttattctccagactacggttttccc 200 |||||||||| ||||||||||||||| ||| |||| Sbjct: 11364 ggtactctccctattctccagactacagttatccc 11398 Score = 44.1 bits (22), Expect = 0.51 Identities = 40/46 (86%) Strand = Plus / Plus Query: 204 aactactacaacatctatggaggaaaccagtacccattttacggag 249 ||||||||||||||||| |||||| || ||||||||||| |||| Sbjct: 13640 aactactacaacatctacggaggagctcaatacccattttatggag 13685
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 87 gcgctgggcgcagcttttccttcgc 111 |||| |||||||||||||||||||| Sbjct: 851059 gcgccgggcgcagcttttccttcgc 851035
>gb|AF279106.2| Uncultured marine gamma proteobacterium EBAC31A08 BAC sequence Length = 128758 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 405 gctgctgtaacaggctttgca 425 ||||||||||||||||||||| Sbjct: 126619 gctgctgtaacaggctttgca 126599
>gb|AY458644.1| Uncultured bacterium 562 clone EBAC000-45B06 genomic sequence Length = 61185 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 405 gctgctgtaacaggctttgca 425 ||||||||||||||||||||| Sbjct: 27061 gctgctgtaacaggctttgca 27041
>gb|AY372454.1| Uncultured marine gamma proteobacterium EB000-45B06 fosmid clone Length = 61173 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 405 gctgctgtaacaggctttgca 425 ||||||||||||||||||||| Sbjct: 27061 gctgctgtaacaggctttgca 27041
>gb|AC126796.4| Mus musculus BAC clone RP23-384F19 from chromosome 10, complete sequence Length = 211025 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 actactacaacatctatgga 224 |||||||||||||||||||| Sbjct: 14267 actactacaacatctatgga 14248
>gb|AC125204.4| Mus musculus BAC clone RP23-237H8 from 10, complete sequence Length = 198473 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 actactacaacatctatgga 224 |||||||||||||||||||| Sbjct: 37139 actactacaacatctatgga 37158
>emb|AL353789.18| Human DNA sequence from clone RP11-570F6 on chromosome 13 Contains the 5' end of the WASF3 gene for WAS protein family, member 3 (WASP family Verprolin-homologous protein 3(SCAR3, Scar3, WAVE3, KIAA0900)), a ribosomal protein S3A (RPS3A)(FTE1) pseudogene and a CpG island, complete sequence Length = 166787 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 ggaggagcaggaactggcat 265 |||||||||||||||||||| Sbjct: 113752 ggaggagcaggaactggcat 113733
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 tgggcagcagcaggctgcgg 75 |||||||||||||||||||| Sbjct: 2994573 tgggcagcagcaggctgcgg 2994554
>gb|AC011200.9|AC011200 Homo sapiens chromosome 8 clone RP11-71N3, complete sequence Length = 161271 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 568 cccctctcactttgctgtgt 587 |||||||||||||||||||| Sbjct: 79415 cccctctcactttgctgtgt 79434
>gb|AC131042.6| Homo sapiens chromosome 8, clone CTD-2607C6, complete sequence Length = 152632 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 568 cccctctcactttgctgtgt 587 |||||||||||||||||||| Sbjct: 82522 cccctctcactttgctgtgt 82503
>emb|CR388011.14| Zebrafish DNA sequence from clone CH211-135J15 in linkage group 19, complete sequence Length = 163300 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 ctacagccgctgctgtaaca 416 |||||||||||||||||||| Sbjct: 94705 ctacagccgctgctgtaaca 94724 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,606,987 Number of Sequences: 3902068 Number of extensions: 4606987 Number of successful extensions: 79755 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79603 Number of HSP's gapped (non-prelim): 151 length of query: 587 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 564 effective length of database: 17,143,297,704 effective search space: 9668819905056 effective search space used: 9668819905056 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
