ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd24h09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472287.1| Oryza sativa (japonica cultivar-group), predic... 315 1e-82
2dbj|AK122001.1| Oryza sativa (japonica cultivar-group) cDNA clon... 315 1e-82
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
4emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4,... 109 1e-20
5gb|AC144644.3| Medicago truncatula clone mth2-14l3, complete seq... 60 9e-06
6ref|XM_470782.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.14
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.14
8gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genom... 46 0.14
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
10gb|AC135956.6| Oryza sativa (japonica cultivar-group) chromosome... 42 2.2
11gb|AC119072.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0... 42 2.2
12gb|AC093783.2| Homo sapiens BAC clone RP11-209D20 from 4, comple... 42 2.2
13dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
14dbj|AK072355.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.2
15gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.2
16gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 40 8.7
17ref|XM_752242.1| Ustilago maydis 521 hypothetical protein (UM011... 40 8.7
18gb|AC126030.3| Mus musculus BAC clone RP23-452N11 from chromosom... 40 8.7
19gb|AC115768.9| Mus musculus chromosome 19, clone RP23-107E10, co... 40 8.7
20gb|AC102132.3| Mus musculus chromosome 18, clone RP23-231D1, com... 40 8.7
21emb|AL022719.1|HS231L4 Human DNA sequence from clone RP1-231L4 o... 40 8.7
22emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 8.7
23emb|AL589742.21| Mouse DNA sequence from clone RP23-298F22 on ch... 40 8.7
24gb|DQ374025.1| Beta vulgaris chromosome 9 clone BAC62 genomic se... 40 8.7
25dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
26gb|AC015448.4|AC015448 Arabidopsis thaliana chromosome I BAC T14... 40 8.7
27dbj|AP004229.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
28dbj|AP003398.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.7
29emb|AL672307.9| Mouse DNA sequence from clone RP23-141N2 on chro... 40 8.7 
>ref|XM_472287.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2859

 Score =  315 bits (159), Expect = 1e-82
 Identities = 306/355 (86%)
 Strand = Plus / Plus

                                                                       
Query: 285 gttttgacatcaacgtgcttctcagagaagcaaggagccgatggttaaagccttctgaag 344
           ||||||| ||||||||||||| || ||||||||||||| | ||| |||||||||||||||
Sbjct: 11  gttttgatatcaacgtgcttcacaaagaagcaaggagcaggtggctaaagccttctgaag 70

                                                                       
Query: 345 tttactatatcttgttgaatcatgaacagctccagatcacccatgagccaccaaataggc 404
           | ||||||||||||   ||||||||   | |||  ||||||| ||| || ||||| | ||
Sbjct: 71  tctactatatcttgcaaaatcatgagaggttcccaatcacccctgaaccgccaaagaagc 130

                                                                       
Query: 405 cacccagtggttcactattcctttataatagccgtgtgaatcggtttttccggaaagatg 464
           ||||||||||||| ||||||||||||||| ||||||||||||||| ||| ||||  ||||
Sbjct: 131 cacccagtggttctctattcctttataatcgccgtgtgaatcggtattttcggagggatg 190

                                                                       
Query: 465 gtcatgcatggcgaaggaaaagagacggaagaactgttcgggaggctcacgagcgattaa 524
           | ||||||||||| ||||| |  || |||||||||||| |||||||||| || ||||| |
Sbjct: 191 gccatgcatggcggaggaagaaggatggaagaactgttggggaggctcatgaacgattga 250

                                                                       
Query: 525 aggttggaaatgttcatactttgagttgctactatgctcatggagagcaaaatctatgtt 584
           |||||||||||||| || || | ||||| || ||||||||||| |||||||||| |||||
Sbjct: 251 aggttggaaatgttgatgctctcagttgttattatgctcatggtgagcaaaatccatgtt 310

                                                                  
Query: 585 ttcagagacgatgtttcaggatgctggaacctgcatatgaccatattgtgctggt 639
           ||||||| ||||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct: 311 ttcagaggcgatgtttctggatgctggaaccagcatatgaacatattgtgctggt 365
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>dbj|AK122001.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110J06, full
           insert sequence
          Length = 3630

 Score =  315 bits (159), Expect = 1e-82
 Identities = 306/355 (86%)
 Strand = Plus / Plus

                                                                       
Query: 285 gttttgacatcaacgtgcttctcagagaagcaaggagccgatggttaaagccttctgaag 344
           ||||||| ||||||||||||| || ||||||||||||| | ||| |||||||||||||||
Sbjct: 319 gttttgatatcaacgtgcttcacaaagaagcaaggagcaggtggctaaagccttctgaag 378

                                                                       
Query: 345 tttactatatcttgttgaatcatgaacagctccagatcacccatgagccaccaaataggc 404
           | ||||||||||||   ||||||||   | |||  ||||||| ||| || ||||| | ||
Sbjct: 379 tctactatatcttgcaaaatcatgagaggttcccaatcacccctgaaccgccaaagaagc 438

                                                                       
Query: 405 cacccagtggttcactattcctttataatagccgtgtgaatcggtttttccggaaagatg 464
           ||||||||||||| ||||||||||||||| ||||||||||||||| ||| ||||  ||||
Sbjct: 439 cacccagtggttctctattcctttataatcgccgtgtgaatcggtattttcggagggatg 498

                                                                       
Query: 465 gtcatgcatggcgaaggaaaagagacggaagaactgttcgggaggctcacgagcgattaa 524
           | ||||||||||| ||||| |  || |||||||||||| |||||||||| || ||||| |
Sbjct: 499 gccatgcatggcggaggaagaaggatggaagaactgttggggaggctcatgaacgattga 558

                                                                       
Query: 525 aggttggaaatgttcatactttgagttgctactatgctcatggagagcaaaatctatgtt 584
           |||||||||||||| || || | ||||| || ||||||||||| |||||||||| |||||
Sbjct: 559 aggttggaaatgttgatgctctcagttgttattatgctcatggtgagcaaaatccatgtt 618

                                                                  
Query: 585 ttcagagacgatgtttcaggatgctggaacctgcatatgaccatattgtgctggt 639
           ||||||| ||||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct: 619 ttcagaggcgatgtttctggatgctggaaccagcatatgaacatattgtgctggt 673
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  109 bits (55), Expect = 1e-20
 Identities = 103/119 (86%)
 Strand = Plus / Plus

                                                                            
Query: 411      gtggttcactattcctttataatagccgtgtgaatcggtttttccggaaagatggtcatg 470
                ||||||| ||||||||||||||| ||||||||||||||| ||| ||||  ||||| ||||
Sbjct: 19117946 gtggttctctattcctttataatcgccgtgtgaatcggtattttcggagggatggccatg 19118005

                                                                           
Query: 471      catggcgaaggaaaagagacggaagaactgttcgggaggctcacgagcgattaaaggtt 529
                ||||||| ||||| |  || |||||||||||| |||||||||| || ||||| ||||||
Sbjct: 19118006 catggcggaggaagaaggatggaagaactgttggggaggctcatgaacgattgaaggtt 19118064



 Score =  101 bits (51), Expect = 3e-18
 Identities = 81/91 (89%)
 Strand = Plus / Plus

                                                                            
Query: 525      aggttggaaatgttcatactttgagttgctactatgctcatggagagcaaaatctatgtt 584
                |||||||||||||| || || | ||||| || ||||||||||| |||||||||| |||||
Sbjct: 19118393 aggttggaaatgttgatgctctcagttgttattatgctcatggtgagcaaaatccatgtt 19118452

                                               
Query: 585      ttcagagacgatgtttcaggatgctggaacc 615
                ||||||| ||||||||| |||||||||||||
Sbjct: 19118453 ttcagaggcgatgtttctggatgctggaacc 19118483



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 70/77 (90%)
 Strand = Plus / Plus

                                                                            
Query: 282      taggttttgacatcaacgtgcttctcagagaagcaaggagccgatggttaaagccttctg 341
                |||||||||| ||||||||||||| || ||||||||||||| | ||| ||||||||||||
Sbjct: 19117730 taggttttgatatcaacgtgcttcacaaagaagcaaggagcaggtggctaaagccttctg 19117789

                                 
Query: 342      aagtttactatatcttg 358
                |||| ||||||||||||
Sbjct: 19117790 aagtctactatatcttg 19117806
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>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21,
             complete sequence
          Length = 151936

 Score =  109 bits (55), Expect = 1e-20
 Identities = 103/119 (86%)
 Strand = Plus / Plus

                                                                         
Query: 411   gtggttcactattcctttataatagccgtgtgaatcggtttttccggaaagatggtcatg 470
             ||||||| ||||||||||||||| ||||||||||||||| ||| ||||  ||||| ||||
Sbjct: 51467 gtggttctctattcctttataatcgccgtgtgaatcggtattttcggagggatggccatg 51526

                                                                        
Query: 471   catggcgaaggaaaagagacggaagaactgttcgggaggctcacgagcgattaaaggtt 529
             ||||||| ||||| |  || |||||||||||| |||||||||| || ||||| ||||||
Sbjct: 51527 catggcggaggaagaaggatggaagaactgttggggaggctcatgaacgattgaaggtt 51585



 Score =  101 bits (51), Expect = 3e-18
 Identities = 81/91 (89%)
 Strand = Plus / Plus

                                                                         
Query: 525   aggttggaaatgttcatactttgagttgctactatgctcatggagagcaaaatctatgtt 584
             |||||||||||||| || || | ||||| || ||||||||||| |||||||||| |||||
Sbjct: 51914 aggttggaaatgttgatgctctcagttgttattatgctcatggtgagcaaaatccatgtt 51973

                                            
Query: 585   ttcagagacgatgtttcaggatgctggaacc 615
             ||||||| ||||||||| |||||||||||||
Sbjct: 51974 ttcagaggcgatgtttctggatgctggaacc 52004



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 70/77 (90%)
 Strand = Plus / Plus

                                                                         
Query: 282   taggttttgacatcaacgtgcttctcagagaagcaaggagccgatggttaaagccttctg 341
             |||||||||| ||||||||||||| || ||||||||||||| | ||| ||||||||||||
Sbjct: 51251 taggttttgatatcaacgtgcttcacaaagaagcaaggagcaggtggctaaagccttctg 51310

                              
Query: 342   aagtttactatatcttg 358
             |||| ||||||||||||
Sbjct: 51311 aagtctactatatcttg 51327
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>gb|AC144644.3| Medicago truncatula clone mth2-14l3, complete sequence
          Length = 117645

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 452  ttccggaaagatggtcatgcatggcgaaggaaaagagacggaagaactgt 501
            |||||||||||||||||||| ||||| | ||||||||| |||||| ||||
Sbjct: 1608 ttccggaaagatggtcatgcctggcggaagaaaagagatggaagagctgt 1559
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>ref|XM_470782.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3280

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 551 tgctactatgctcatggagagcaaaat 577
           ||||||||||||||||||||| |||||
Sbjct: 304 tgctactatgctcatggagaggaaaat 330
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 551      tgctactatgctcatggagagcaaaat 577
                ||||||||||||||||||||| |||||
Sbjct: 15340151 tgctactatgctcatggagaggaaaat 15340177



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 240      gtccttcagagaaacattatt 260
                |||||||||||||||||||||
Sbjct: 29425376 gtccttcagagaaacattatt 29425356
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>gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genomic sequence, complete
              sequence
          Length = 164705

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 551    tgctactatgctcatggagagcaaaat 577
              ||||||||||||||||||||| |||||
Sbjct: 161375 tgctactatgctcatggagaggaaaat 161349
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 551      tgctactatgctcatggagagcaaaat 577
                ||||||||||||||||||||| |||||
Sbjct: 15334685 tgctactatgctcatggagaggaaaat 15334711



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 240      gtccttcagagaaacattatt 260
                |||||||||||||||||||||
Sbjct: 29516798 gtccttcagagaaacattatt 29516778
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>gb|AC135956.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0005H20, complete sequence
          Length = 135560

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 240   gtccttcagagaaacattatt 260
             |||||||||||||||||||||
Sbjct: 60594 gtccttcagagaaacattatt 60614
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>gb|AC119072.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0073N20 BAC genomic
             sequence, complete sequence
          Length = 147289

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 48/53 (90%), Gaps = 3/53 (5%)
 Strand = Plus / Minus

                                                                  
Query: 13    aggctcaagnctaggtttcaacgcccatataggggnagnaagtatgacaatat 65
             ||||||||| ||||||||||| ||||||| ||||| || ||||||||||||||
Sbjct: 63807 aggctcaag-ctaggtttcaatgcccataaagggg-ag-aagtatgacaatat 63758



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 178   caagcacccaaggtgtcctag 198
             |||||||||||||||||||||
Sbjct: 29492 caagcacccaaggtgtcctag 29472
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>gb|AC093783.2| Homo sapiens BAC clone RP11-209D20 from 4, complete sequence
          Length = 121709

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 300   tgcttctcagagaagcaagga 320
             |||||||||||||||||||||
Sbjct: 97179 tgcttctcagagaagcaagga 97159
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 178     caagcacccaaggtgtcctag 198
               |||||||||||||||||||||
Sbjct: 6514738 caagcacccaaggtgtcctag 6514758



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 48/53 (90%), Gaps = 3/53 (5%)
 Strand = Plus / Plus

                                                                    
Query: 13      aggctcaagnctaggtttcaacgcccatataggggnagnaagtatgacaatat 65
               ||||||||| ||||||||||| ||||||| ||||| || ||||||||||||||
Sbjct: 6480423 aggctcaag-ctaggtttcaatgcccataaagggg-ag-aagtatgacaatat 6480472
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>dbj|AK072355.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055L12, full
            insert sequence
          Length = 4237

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 48/53 (90%), Gaps = 3/53 (5%)
 Strand = Plus / Plus

                                                                 
Query: 13   aggctcaagnctaggtttcaacgcccatataggggnagnaagtatgacaatat 65
            ||||||||| ||||||||||| ||||||| ||||| || ||||||||||||||
Sbjct: 2603 aggctcaag-ctaggtttcaatgcccataaagggg-ag-aagtatgacaatat 2652
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 178     caagcacccaaggtgtcctag 198
               |||||||||||||||||||||
Sbjct: 6581205 caagcacccaaggtgtcctag 6581225



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 48/53 (90%), Gaps = 3/53 (5%)
 Strand = Plus / Plus

                                                                    
Query: 13      aggctcaagnctaggtttcaacgcccatataggggnagnaagtatgacaatat 65
               ||||||||| ||||||||||| ||||||| ||||| || ||||||||||||||
Sbjct: 6546890 aggctcaag-ctaggtttcaatgcccataaagggg-ag-aagtatgacaatat 6546939
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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 594    gatgtttcaggatgctggaa 613
              ||||||||||||||||||||
Sbjct: 762569 gatgtttcaggatgctggaa 762588
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>ref|XM_752242.1| Ustilago maydis 521 hypothetical protein (UM01188.1) partial mRNA
          Length = 1767

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 303  ttctcagagaagcaaggagccgatggtt 330
            |||||||||| ||||||||||| |||||
Sbjct: 1681 ttctcagagatgcaaggagccgctggtt 1708
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>gb|AC126030.3| Mus musculus BAC clone RP23-452N11 from chromosome 16, complete
             sequence
          Length = 187505

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   gtacattgctgcacaaattg 119
             ||||||||||||||||||||
Sbjct: 52443 gtacattgctgcacaaattg 52424
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>gb|AC115768.9| Mus musculus chromosome 19, clone RP23-107E10, complete sequence
          Length = 212161

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 598    tttcaggatgctggaacctg 617
              ||||||||||||||||||||
Sbjct: 142168 tttcaggatgctggaacctg 142187
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>gb|AC102132.3| Mus musculus chromosome 18, clone RP23-231D1, complete sequence
          Length = 183544

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 572    caaaatctatgttttcagag 591
              ||||||||||||||||||||
Sbjct: 120308 caaaatctatgttttcagag 120327
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>emb|AL022719.1|HS231L4 Human DNA sequence from clone RP1-231L4 on chromosome Xq27.1-27.3
             Contains part of a novel gene and a piggyBac transposable
             element derived 4 (PGBD4) pseudogene, complete sequence
          Length = 151519

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 568   agagcaaaatctatgttttc 587
             ||||||||||||||||||||
Sbjct: 46187 agagcaaaatctatgttttc 46168
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>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2602197

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 117     ttggagctactactgactca 136
               ||||||||||||||||||||
Sbjct: 1971830 ttggagctactactgactca 1971811
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>emb|AL589742.21| Mouse DNA sequence from clone RP23-298F22 on chromosome 13 Contains
             genes 4921504I05Rik and 1810010A06Rik, the gene for a
             novel SCAN and C2H2 type zinc finger domain containing
             protein, the Cox5b gene for cytochrome c oxidase subunit
             Vb, the Zfp192 gene for zinc finger protein 192, the gene
             for a novel protein similar to olfactory receptors, the
             genes for olfactory receptors MOR130-2 and MOR256-13 and a
             CpG island, complete sequence
          Length = 125641

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   ggttaaagccttctgaagtt 346
             ||||||||||||||||||||
Sbjct: 76572 ggttaaagccttctgaagtt 76591
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>gb|DQ374025.1| Beta vulgaris chromosome 9 clone BAC62 genomic sequence
          Length = 5268

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 532  aaatgttcatactttgagtt 551
            ||||||||||||||||||||
Sbjct: 4663 aaatgttcatactttgagtt 4682
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 542      actttgagttgctactatgctcat 565
                |||||||||||||||| |||||||
Sbjct: 11054411 actttgagttgctactctgctcat 11054388
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>gb|AC015448.4|AC015448 Arabidopsis thaliana chromosome I BAC T14L22 genomic sequence, complete
             sequence
          Length = 95581

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 350   tatatcttgttgaatcatgaacag 373
             |||||||| |||||||||||||||
Sbjct: 65931 tatatcttattgaatcatgaacag 65908
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>dbj|AP004229.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1124_E11
          Length = 133524

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 542   actttgagttgctactatgctcat 565
             |||||||||||||||| |||||||
Sbjct: 37105 actttgagttgctactctgctcat 37082
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>dbj|AP003398.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-170L9, complete
             sequence
          Length = 156829

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 522   taaaggttggaaatgttcat 541
             ||||||||||||||||||||
Sbjct: 46418 taaaggttggaaatgttcat 46399
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>emb|AL672307.9| Mouse DNA sequence from clone RP23-141N2 on chromosome 2, complete
              sequence
          Length = 206168

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 409    cagtggttcactattccttt 428
              ||||||||||||||||||||
Sbjct: 126043 cagtggttcactattccttt 126024


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,364,435
Number of Sequences: 3902068
Number of extensions: 5364435
Number of successful extensions: 88545
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 88168
Number of HSP's gapped (non-prelim): 372
length of query: 639
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 616
effective length of database: 17,143,297,704
effective search space: 10560271385664
effective search space used: 10560271385664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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