ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd24g01 |
|---|---|
| Clone Library Name | barley_pub |
>RF1_ORYSA (Q76C99) Rf1 protein, mitochondrial precursor (PPR protein)| (Fertility restorer) (Restorer for CMS) Length = 791 Score = 52.8 bits (125), Expect = 8e-07 Identities = 46/193 (23%), Positives = 82/193 (42%), Gaps = 19/193 (9%) Frame = +2 Query: 23 IMAYSSCMGACCNAKDWKKALQLFEEIKAIKLIPTVPMMNALITSLCDNDQVIKSAEVLN 202 ++ Y+S + A C A+ KA+++ + ++P N+++ C + Q ++ L Sbjct: 231 VVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLK 290 Query: 203 EIRELGVRPNEITYSVLCVACERNGEAQLALDLFEQLKVDGIGLNPTIVGCL------TG 364 ++R GV P+ +TYS+L +NG A +F+ + G+ T G L G Sbjct: 291 KMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKG 350 Query: 365 LCLQMFS-CDLSLGN------------IIVRFNQGKPQIDNKWTSSAIMVFRQAITAGLL 505 ++M DL + N I QGK A++VF + GL Sbjct: 351 ALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGK-------VDQAMLVFSKMRQQGLN 403 Query: 506 PSSDVLSQVLGCL 544 P++ V+G L Sbjct: 404 PNAVTYGAVIGIL 416 Score = 48.9 bits (115), Expect = 1e-05 Identities = 30/126 (23%), Positives = 63/126 (50%), Gaps = 8/126 (6%) Frame = +2 Query: 23 IMAYSSCMGACCNAKDWKKALQLFEEIKAIKLIPTVPMMNALITSLCDNDQVIKSAEVLN 202 +++Y++ + D KA + E+ ++P V N++I +LC + K+ EVLN Sbjct: 196 VVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLN 255 Query: 203 EIRELGVRPNEITYSVLCVACERNGEAQLALDLFEQLKVDGIGLNPTIVG--------CL 358 + + GV P+ +TY+ + +G+ + A+ ++++ DG+ P +V C Sbjct: 256 TMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGV--EPDVVTYSLLMDYLCK 313 Query: 359 TGLCLQ 376 G C++ Sbjct: 314 NGRCME 319 Score = 48.1 bits (113), Expect = 2e-05 Identities = 30/110 (27%), Positives = 52/110 (47%) Frame = +2 Query: 20 GIMAYSSCMGACCNAKDWKKALQLFEEIKAIKLIPTVPMMNALITSLCDNDQVIKSAEVL 199 G + Y+S + C W++A +L E+ + N++I S C +VI+S ++ Sbjct: 440 GNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLF 499 Query: 200 NEIRELGVRPNEITYSVLCVACERNGEAQLALDLFEQLKVDGIGLNPTIV 349 + +GV+PN ITY+ L G+ A+ L + +GL P V Sbjct: 500 ELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMV--SVGLKPNTV 547 Score = 42.0 bits (97), Expect = 0.001 Identities = 27/106 (25%), Positives = 57/106 (53%) Frame = +2 Query: 32 YSSCMGACCNAKDWKKALQLFEEIKAIKLIPTVPMMNALITSLCDNDQVIKSAEVLNEIR 211 ++S + + C ++ +LFE + I + P V N LI C ++ ++ ++L+ + Sbjct: 479 FNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMV 538 Query: 212 ELGVRPNEITYSVLCVACERNGEAQLALDLFEQLKVDGIGLNPTIV 349 +G++PN +TYS L + + AL LF++++ G+ +P I+ Sbjct: 539 SVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGV--SPDII 582 Score = 38.5 bits (88), Expect = 0.016 Identities = 36/166 (21%), Positives = 69/166 (41%) Frame = +2 Query: 26 MAYSSCMGACCNAKDWKKALQLFEEIKAIKLIPTVPMMNALITSLCDNDQVIKSAEVLNE 205 + YS+ + C + AL LF+E+++ + P + N ++ L + + E+ Sbjct: 547 VTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVR 606 Query: 206 IRELGVRPNEITYSVLCVACERNGEAQLALDLFEQLKVDGIGLNPTIVGCLTGLCLQMFS 385 I E G + TY+++ +N AL +F+ L + + L + L++ Sbjct: 607 ITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGR 666 Query: 386 CDLSLGNIIVRFNQGKPQIDNKWTSSAIMVFRQAITAGLLPSSDVL 523 D ++ V F+ + N WT ++ I GLL D L Sbjct: 667 ND-EAKDLFVAFS-SNGLVPNYWTYR--LMAENIIGQGLLEELDQL 708 Score = 35.8 bits (81), Expect = 0.10 Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Frame = +2 Query: 26 MAYSSCMGACCNAKDWKKALQLFEEIKAIKLIPTVPMMNALITSLCDNDQVIKSAEVLNE 205 + Y + +G C + + A+ FE++ L P + N+LI LC ++ ++ E++ E Sbjct: 407 VTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILE 466 Query: 206 IRELGVRPNEITYSVLCVACERNGEAQLALDLFEQLKVDGIGLNPTIV---GCLTGLCL 373 + + G+ N I ++ + + + G + LFE + IG+ P ++ + G CL Sbjct: 467 MLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMV--RIGVKPNVITYNTLINGYCL 523 Score = 34.7 bits (78), Expect = 0.23 Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Frame = +2 Query: 134 MMNALITSLCDNDQVIKSAEVLNEIRELGVRPNEITYSVLCVACERNGEAQLALDLFEQL 313 + + LI + +V ++ V +++R+ G+ PN +TY + ++G + A+ FEQ+ Sbjct: 373 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM 432 Query: 314 KVDGIGLNPTIVGCLT-GLC 370 +G+ + L GLC Sbjct: 433 IDEGLSPGNIVYNSLIHGLC 452 Score = 34.7 bits (78), Expect = 0.23 Identities = 24/112 (21%), Positives = 52/112 (46%), Gaps = 4/112 (3%) Frame = +2 Query: 5 RXFHVGIMAYSSCMGACCNAKDWKKALQL-FEEIKAIKLIPTVPMMNALITSLCDNDQVI 181 + F V +A++ + C K A+ + + + IP V N L+ LCD ++ Sbjct: 116 KGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQ 175 Query: 182 KSAEVLN---EIRELGVRPNEITYSVLCVACERNGEAQLALDLFEQLKVDGI 328 ++ E+L+ + R G P+ ++Y+ + + G++ A + ++ GI Sbjct: 176 EALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGI 227
>Y4791_ARATH (P0C043) Hypothetical PPR-repeat protein At4g17915| Length = 463 Score = 47.0 bits (110), Expect = 4e-05 Identities = 27/98 (27%), Positives = 51/98 (52%) Frame = +2 Query: 32 YSSCMGACCNAKDWKKALQLFEEIKAIKLIPTVPMMNALITSLCDNDQVIKSAEVLNEIR 211 Y+ + A C AL+LF+E+++ + P + N LI LC + +V + +L E++ Sbjct: 157 YNVLLDALCKCGYIDNALELFKEMQS-RFKPELMTYNILINGLCKSRRVGTAKWMLTELK 215 Query: 212 ELGVRPNEITYSVLCVACERNGEAQLALDLFEQLKVDG 325 + G PN +TY+ + + + L LF ++K +G Sbjct: 216 KSGYTPNAVTYTTILKLYFKTRRIRRGLQLFLEMKREG 253 Score = 39.7 bits (91), Expect = 0.007 Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 1/115 (0%) Frame = +2 Query: 29 AYSSCMGACCNAKDWKKALQLFEEIKAIKLIPTVPMMNALITSLCDNDQVIKSAEVLNEI 208 AY + + A K+A + +E+ + N L+ + + ++L EI Sbjct: 260 AYFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLYFKDGNLDAVDDLLGEI 319 Query: 209 RELGVRPNEITYSVLCVACERNGEAQLALDLFEQLKVDGIGLNPTIVGCLT-GLC 370 G++ +E T++++ R G+ + A + F + GIGLN CL GLC Sbjct: 320 ERRGMKADEYTHTIIVNGLLRTGQTRRAEEHFVSMGEMGIGLNLVTCNCLVDGLC 374 Score = 38.9 bits (89), Expect = 0.012 Identities = 25/96 (26%), Positives = 44/96 (45%) Frame = +2 Query: 41 CMGACCNAKDWKKALQLFEEIKAIKLIPTVPMMNALITSLCDNDQVIKSAEVLNEIRELG 220 C+ + C + +KA L + + + P V N LI+ C + ++ V +R+ G Sbjct: 19 CVDSLCKFRKLEKAESLIIDGIRLGVDPDVVTYNTLISGYCRFVGIEEAYAVTRRMRDAG 78 Query: 221 VRPNEITYSVLCVACERNGEAQLALDLFEQLKVDGI 328 +RP+ TY+ L R L LF+++ GI Sbjct: 79 IRPDVATYNSLIAGAARRLMLDHVLYLFDEMLEWGI 114
>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I| Length = 1261 Score = 44.7 bits (104), Expect = 2e-04 Identities = 25/83 (30%), Positives = 45/83 (54%) Frame = +2 Query: 68 DWKKALQLFEEIKAIKLIPTVPMMNALITSLCDNDQVIKSAEVLNEIRELGVRPNEITYS 247 D AL +FEE K + P+V + NA+++ L + + ++ E++E G+ P +TY Sbjct: 906 DATTALNIFEETKRHNVKPSVFLYNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYG 965 Query: 248 VLCVACERNGEAQLALDLFEQLK 316 + A R G+ LA LF +++ Sbjct: 966 TVINAACRIGDESLAEKLFAEME 988
>PTCD1_PONPY (Q5R655) Pentatricopeptide repeat protein 1| Length = 698 Score = 38.5 bits (88), Expect = 0.016 Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 20/177 (11%) Frame = +2 Query: 77 KALQLFEE--IKAIKLIPTVPMMNALITSLCDNDQVIKSAEVLNEIRELGVRPNEITYSV 250 +AL LFE +K +L P ALI + K+ + N++++ + P++ TY+ Sbjct: 152 EALDLFERQMLKEERLQPMESNYTALIGGCGRVGYLKKAFSLYNQMKKRDLEPSDATYTA 211 Query: 251 LCVACE----RNGEAQLALDLFEQLKVDGIGLNPTIVGCL---------TGLCLQMFSCD 391 L C ++ Q AL L +QL+ LN L +CL +F Sbjct: 212 LFNVCAESPWKDSALQSALKLRQQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEI 271 Query: 392 LSLGNIIVR-----FNQGKPQIDNKWTSSAIMVFRQAITAGLLPSSDVLSQVLGCLR 547 + G+++ G Q A+ V+R ++ GL PS D + +L R Sbjct: 272 IHKGHVVTEETFSFLLMGCIQDKKTGFRYALQVWRLMLSLGLQPSRDSYNLLLVAAR 328 Score = 33.9 bits (76), Expect = 0.38 Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 15/139 (10%) Frame = +2 Query: 32 YSSCMGACCNAKDWKKALQLFEEIKAIKLIPTVPMMNALITSLCDN---DQVIKSA-EVL 199 Y++ +G C KKA L+ ++K L P+ AL ++ D ++SA ++ Sbjct: 174 YTALIGGCGRVGYLKKAFSLYNQMKKRDLEPSDATYTALFNVCAESPWKDSALQSALKLR 233 Query: 200 NEIRELGVRPNEITYSVLCVACERNGEAQLALDLFEQLKVDGIGLNP-----TIVGCL-- 358 +++ N TY L + + ++ LD+F+++ G + ++GC+ Sbjct: 234 QQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTEETFSFLLMGCIQD 293 Query: 359 --TGL--CLQMFSCDLSLG 403 TG LQ++ LSLG Sbjct: 294 KKTGFRYALQVWRLMLSLG 312
>PTCD1_MOUSE (Q8C2E4) Pentatricopeptide repeat protein 1| Length = 695 Score = 36.6 bits (83), Expect = 0.059 Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 15/139 (10%) Frame = +2 Query: 32 YSSCMGACCNAKDWKKALQLFEEIKAIKLIPTVPMMNALITSLCDN---DQVIKSA-EVL 199 Y+ +G C KKA +LF ++K L P+ AL ++ D ++SA ++ Sbjct: 174 YTVLIGGCGRVGYLKKAFRLFNDMKKRDLEPSDATYTALFNVCAESPWKDSALQSALKLR 233 Query: 200 NEIRELGVRPNEITYSVLCVACERNGEAQLALDLFEQLKVDGIGLNP-----TIVGCL-- 358 +++ + N TY L + + +L LD+F+++ G + +VGC+ Sbjct: 234 QQLQARNFQLNLKTYHALLKVAAKCADLRLCLDVFKEIIQRGHAVTEETFCFLLVGCIQD 293 Query: 359 --TGL--CLQMFSCDLSLG 403 TG +Q++ LSLG Sbjct: 294 KKTGFRQAMQVWRQMLSLG 312
>LPPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP130)| (Leucine-rich PPR motif-containing protein) Length = 1273 Score = 33.9 bits (76), Expect = 0.38 Identities = 21/97 (21%), Positives = 41/97 (42%) Frame = +2 Query: 26 MAYSSCMGACCNAKDWKKALQLFEEIKAIKLIPTVPMMNALITSLCDNDQVIKSAEVLNE 205 + Y + + CN D + A ++ +K L T + +AL+T + + +L Sbjct: 77 VTYQRLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDMENAENILTV 136 Query: 206 IRELGVRPNEITYSVLCVACERNGEAQLALDLFEQLK 316 +R+ G+ P TY L A G+ E+++ Sbjct: 137 MRDAGIEPGPDTYLALLNAYAEKGDIDHVKQTLEKVE 173 Score = 30.8 bits (68), Expect = 3.3 Identities = 17/93 (18%), Positives = 41/93 (44%) Frame = +2 Query: 80 ALQLFEEIKAIKLIPTVPMMNALITSLCDNDQVIKSAEVLNEIRELGVRPNEITYSVLCV 259 A ++++ ++ + + V NAL+ N+ + L ++ E ++PN +TY L Sbjct: 25 AHRIWDTLQKLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIA 84 Query: 260 ACERNGEAQLALDLFEQLKVDGIGLNPTIVGCL 358 + G+ + A + +K + + + L Sbjct: 85 SYCNVGDIEGASKILGFMKTKDLPVTEAVFSAL 117
>MYCPP_HUMAN (Q7Z401) C-myc promoter-binding protein| Length = 1863 Score = 33.1 bits (74), Expect = 0.66 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Frame = +2 Query: 74 KKALQLFEEIKAIKLIPTVPMMNALITSLCDN-DQVIKSAEVLNEIRELGVRPNEITY 244 K A + +++++ K+ P + ++ LC DQ + + VL E+++ G+ PN ITY Sbjct: 791 KTAYDVLKKMQSKKMDPPDEVCYRILMQLCGQYDQPVLAVRVLFEMQKAGIDPNAITY 848
>PTCD1_HUMAN (O75127) Pentatricopeptide repeat protein 1| Length = 700 Score = 32.7 bits (73), Expect = 0.86 Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 15/139 (10%) Frame = +2 Query: 32 YSSCMGACCNAKDWKKALQLFEEIKAIKLIPTVPMMNALITSLCDN---DQVIKSA-EVL 199 Y+ +G C KKA L+ ++K L P+ AL ++ D ++SA ++ Sbjct: 176 YTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFNVCAESPWKDSALQSALKLR 235 Query: 200 NEIRELGVRPNEITYSVLCVACERNGEAQLALDLFEQLKVDGIGLNP-----TIVGCL-- 358 +++ N TY L + + ++ LD+F+++ G + ++GC+ Sbjct: 236 QQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTEETFSFLLMGCIQD 295 Query: 359 --TGL--CLQMFSCDLSLG 403 TG LQ++ LSLG Sbjct: 296 KKTGFRYALQVWRLMLSLG 314
>RENT1_FUGRU (Q98TR3) Putative regulator of nonsense transcripts 1 (EC 3.6.1.-)| (ATP-dependent helicase RENT1) Length = 1097 Score = 31.2 bits (69), Expect = 2.5 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 3/42 (7%) Frame = +2 Query: 212 ELGVRP---NEITYSVLCVACERNGEAQLALDLFEQLKVDGI 328 ELG + EIT S CV C++ +A L+ LFE+L V GI Sbjct: 633 ELGAKQLILGEITASWSCVMCKKAAKAGLSQSLFERLVVLGI 674
>MNS1_YEAST (P32906) Endoplasmic reticulum mannosyl-oligosaccharide| 1,2-alpha-mannosidase (EC 3.2.1.113) (ER alpha-1,2-mannosidase) (Man(9)-alpha-mannosidase) Length = 549 Score = 30.0 bits (66), Expect = 5.6 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 8/94 (8%) Frame = +2 Query: 356 LTGLCLQMFSCDLS-LGNIIVRFNQGKPQIDNKWTSSAIMVFRQAITAGLLPSSDVLSQV 532 +T C QM+ S L IV FN G + D W SS F + + L + + + Sbjct: 381 ITDTCYQMYKQSSSGLAPEIVVFNDGNIKQDGWWRSSVGDFFVKPLDRHNLQRPETVESI 440 Query: 533 LGCLRFPHD-------SSLKNTFIYNMGISCDMP 613 + HD + + +F N + C+ P Sbjct: 441 MFMYHLSHDHKYREWGAEIATSFFENTCVDCNDP 474
>AEP3_ASHGO (Q750L0) ATPase expression protein 3| Length = 536 Score = 29.6 bits (65), Expect = 7.2 Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 1/89 (1%) Frame = +2 Query: 41 CMGACCNAKDWKKALQLFEEIKAIKLIPTVPMMNALITSLCDNDQVIKSAEVLNEIR-EL 217 C+ C ++ A QL + + T +N L+ + + ++ + N ++ +L Sbjct: 358 CISKLCKEYKFESAWQLLTSLCRSTDVVTTGSVNILLNAAAEKGRLDLAVLTYNSMKVQL 417 Query: 218 GVRPNEITYSVLCVACERNGEAQLALDLF 304 GV P+ T+ ++ A RNG + D++ Sbjct: 418 GVTPDLRTHRLIFKAMARNGYHENFQDVY 446 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,337,600 Number of Sequences: 219361 Number of extensions: 1707795 Number of successful extensions: 4458 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4322 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4457 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
