ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd23p11 |
|---|---|
| Clone Library Name | barley_pub |
>NIPA_PONPY (Q5R8V9) Nuclear-interacting partner of ALK (Nuclear-interacting| partner of anaplastic lymphoma kinase) (Zinc finger C3HC-type protein 1) Length = 502 Score = 33.9 bits (76), Expect = 0.52 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Frame = +2 Query: 323 FDPIKHHNNYCPWVNGYVATACTMNTGSSTNSAAFC--GWQLTVDAL 457 FDP H ++CPWVN + N G+ +++A GW+ + L Sbjct: 419 FDPTSQHRDWCPWVNVTLGKESRENGGTEPDASAPAEPGWKAVLTIL 465
>NIPA_HUMAN (Q86WB0) Nuclear-interacting partner of ALK (Nuclear-interacting| partner of anaplastic lymphoma kinase) (hNIPA) (Zinc finger C3HC-type protein 1) Length = 502 Score = 33.5 bits (75), Expect = 0.67 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Frame = +2 Query: 323 FDPIKHHNNYCPWVNGYVATACTMNTGSSTNSAAFC--GWQLTVDAL 457 FDP H ++CPWVN + N G+ +++A GW+ + L Sbjct: 419 FDPTSQHRDWCPWVNITLGKESRENGGTEPDASAPAEPGWKAVLTIL 465
>NIPA_XENTR (Q5M8S7) NIPA-like protein (Zinc finger C3HC-type protein 1-like)| Length = 478 Score = 32.7 bits (73), Expect = 1.2 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%) Frame = +2 Query: 323 FDPIKHHNNYCPWVNGYVATACTMNTGSSTNSAAF---CGWQLTVDALETVQSLGQNQYQ 493 FDP+ H ++CPWVN A+ T GS A GW+ ++ L L + + Sbjct: 391 FDPLSQHRSWCPWVNVCQASE-TSTLGSEIQEEASRKEYGWKEVLNVL-----LAEENSR 444 Query: 494 AMKSDSAASLYKDDH 538 + +S+ + H Sbjct: 445 TLSDPDTSSVPEKSH 459
>NIPA_XENLA (Q6P7H4) NIPA-like protein (Zinc finger C3HC-type protein 1-like)| Length = 477 Score = 32.0 bits (71), Expect = 2.0 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = +2 Query: 323 FDPIKHHNNYCPWVNGYVATACTMNTGSS 409 FDP+ H ++CPWVN V A NT S Sbjct: 394 FDPLSQHRSWCPWVN--VCQASGTNTMGS 420
>MARK4_HUMAN (Q96L34) MAP/microtubule affinity-regulating kinase 4 (EC 2.7.11.1)| (MAP/microtubule affinity-regulating kinase-like 1) Length = 752 Score = 31.6 bits (70), Expect = 2.6 Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 8/112 (7%) Frame = +2 Query: 23 GREEPQGDSHDVASQLVGRVDSGSTKADSVESGEKMSHARGQESN-------LQHSLSCN 181 GR+ +G + RV + S + S + SH++GQ S+ +HS C Sbjct: 368 GRKTEEGGDRGAPGLALARVRAPSDTTNGTSSSKGTSHSKGQRSSSSTYHRQRRHSDFCG 427 Query: 182 ARVYSGIDL-SKDEVTQTGKMLTKDEYDPGNDLGATNGENDSETGLPEFDPI 334 S L K T TG+ K+E PG + + S GLP P+ Sbjct: 428 P---SPAPLHPKRSPTSTGEAELKEERLPGRKASCSTAGSGSR-GLPPSSPM 475
>U888_DEIRA (Q9RVY3) Protein DR0888| Length = 253 Score = 31.2 bits (69), Expect = 3.3 Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 13/111 (11%) Frame = +2 Query: 56 VASQLVGRVDSGSTKADSVESGEKMSHARG-----QESNLQHSLSCNARVYSGIDLSKDE 220 V S + G + + D ++SG + RG E L L+ + SG+D+S Sbjct: 127 VLSAIRGNGELANNPIDVLQSGNSVI-LRGAVDSDHELRLAEQLARGVQGVSGVDISGLR 185 Query: 221 VTQTGKMLTKDEYDPGNDLGATNGENDSETGLP--------EFDPIKHHNN 349 V Q K L KD+ + D T DS + + E+ I H+NN Sbjct: 186 VAQGAKELAKDKDEDTGDTVYTVKPGDSLSKIAEHYYGDQMEYKKIAHYNN 236
>MYST3_HUMAN (Q92794) Histone acetyltransferase MYST3 (EC 2.3.1.48) (EC 2.3.1.-)| (MYST protein 3) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein 3) (Runt-related transcription factor-binding protein 2) (Monocytic leukemia zinc finger protein) (Zinc finger protei Length = 2004 Score = 31.2 bits (69), Expect = 3.3 Identities = 49/192 (25%), Positives = 73/192 (38%), Gaps = 15/192 (7%) Frame = +2 Query: 14 EDAGREEPQGDSHDVASQLVGRVDSGSTKADSVESGEKMSHARGQESNLQHSLSCNARVY 193 EDA E Q D HD + G ++ STK +E + +E +Q S +A + Sbjct: 1302 EDAAAETAQNDDHDADDEDDGHLE--STKKKELEEQPTREDVK-EEPGVQESF-LDANMQ 1357 Query: 194 SGIDLSKD-EVTQTGKMLTKDEYDPGNDLGAT---------NGENDSET-----GLPEFD 328 + KD E T+ L +E P +D + E DS T L E + Sbjct: 1358 KSREKIKDKEETE----LDSEEEQPSHDTSVVSEQMAGSEDDHEEDSHTKEELIELKEEE 1413 Query: 329 PIKHHNNYCPWVNGYVATACTMNTGSSTNSAAFCGWQLTVDALETVQSLGQNQYQAMKSD 508 I H V A SS + A+ + T+ A +T+QS Y D Sbjct: 1414 EIPHSELDLETVQ---AVQSLTQEESSEHEGAYQDCEETLAACQTLQS-----YTQADED 1465 Query: 509 SAASLYKDDHAA 544 S+ +D HA+ Sbjct: 1466 PQMSMVEDCHAS 1477
>SYL_HAEIN (P43827) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 861 Score = 30.8 bits (68), Expect = 4.4 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +2 Query: 200 IDLSKDEVTQTGKMLTKDEYDPGNDLGATNGEND 301 IDL+K + GK++ DE+D N GA NG D Sbjct: 368 IDLTKQAFVEHGKLVNSDEFDGKNFDGAFNGIAD 401
>VLTF_BPT5 (P13390) L-shaped tail fiber protein (Protein ltf)| Length = 1396 Score = 30.4 bits (67), Expect = 5.7 Identities = 21/74 (28%), Positives = 33/74 (44%) Frame = -1 Query: 269 FLGHTRPSSAFYQSGSLHL*INQCQNKLLHCKKGNVAGYSPGLWHGSSSLHSRPNQL*LN 90 ++G T+P S FY S H + +G+VA S G W +S+ P Q+ L Sbjct: 1164 YIGATQPGSTFYIGASGH------DGEKFDSMRGSVAIKSAGGWGPTST----PTQVVLE 1213 Query: 89 HCPLDPLTEMPHRG 48 C ++ +P G Sbjct: 1214 TCESGSISRLPRWG 1227
>FBX42_PONPY (Q5RDA9) F-box only protein 42| Length = 717 Score = 30.0 bits (66), Expect = 7.5 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = +2 Query: 371 YVATACTMNTGSSTNSAAFCGWQLTVDALETVQSLGQNQYQAMKSDSAASLYKD 532 YV CT SS N+A W+L +++ E ++ L Y + K+ + +YKD Sbjct: 134 YVFGGCTQ---SSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLVVYKD 184
>FBX42_MOUSE (Q6PDJ6) F-box only protein 42| Length = 717 Score = 30.0 bits (66), Expect = 7.5 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = +2 Query: 371 YVATACTMNTGSSTNSAAFCGWQLTVDALETVQSLGQNQYQAMKSDSAASLYKD 532 YV CT SS N+A W+L +++ E ++ L Y + K+ + +YKD Sbjct: 134 YVFGGCTQ---SSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLVVYKD 184
>FBX42_HUMAN (Q6P3S6) F-box only protein 42| Length = 717 Score = 30.0 bits (66), Expect = 7.5 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = +2 Query: 371 YVATACTMNTGSSTNSAAFCGWQLTVDALETVQSLGQNQYQAMKSDSAASLYKD 532 YV CT SS N+A W+L +++ E ++ L Y + K+ + +YKD Sbjct: 134 YVFGGCTQ---SSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLVVYKD 184
>NIPA_MOUSE (Q80YV2) Nuclear-interacting partner of ALK (Nuclear-interacting| partner of anaplastic lymphoma kinase) (mNIPA) (Zinc finger C3HC-type protein 1) Length = 501 Score = 30.0 bits (66), Expect = 7.5 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +2 Query: 323 FDPIKHHNNYCPWVN 367 FDP H ++CPWVN Sbjct: 418 FDPTSQHRDWCPWVN 432
>SCRL1_ORYSA (Q84TX2) SCAR-like protein 1| Length = 2097 Score = 29.6 bits (65), Expect = 9.7 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 7/96 (7%) Frame = +2 Query: 26 REEPQGDSHDVASQLVGRVDSGSTKADSVESGEKMSHARGQESNLQHSLSCNARVYSGID 205 R+E + + H S+L +DS DS GE H++S N +SG+D Sbjct: 439 RDEGENERHTEFSELGHVIDSSPWLNDSYNGGEP-----------NHAISSNTN-FSGVD 486 Query: 206 LSKDE-------VTQTGKMLTKDEYDPGNDLGATNG 292 + DE + + + + ND+ TNG Sbjct: 487 CTNDEEPSNDVDLMEMDVSSSSSVFSDDNDVFRTNG 522
>GAL1_FUSNN (Q8RHD0) Galactokinase (EC 2.7.1.6) (Galactose kinase)| Length = 389 Score = 29.6 bits (65), Expect = 9.7 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Frame = +2 Query: 107 SVESGEKMSHARGQESNLQ---HSLSCNARVYSGID-LSKDEVTQTGKMLTKDEYDPGND 274 +V EK+ H E L+ H+++ N R ++ L KD++ + GK++ K +D Sbjct: 252 TVTEFEKVKHYITDEEQLKRATHAVTENERAKIAVEFLKKDDIAEFGKLMNKSHTSLRDD 311 Query: 275 LGATNGENDS 304 T E DS Sbjct: 312 YEVTGLELDS 321 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,268,754 Number of Sequences: 219361 Number of extensions: 2154101 Number of successful extensions: 5510 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 5300 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5502 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7366267610 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
