Clone Information

BLAST Search Result

Clone Name	basd23p11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_476650.1\| Oryza sativa (japonica cultivar-group), mRNA	315	1e-82
2	dbj\|AK073749.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	315	1e-82
3	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	184	3e-43
4	dbj\|AP003703.4\| Oryza sativa (japonica cultivar-group) genomic D...	184	3e-43
5	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	66	2e-07
6	gb\|AC133340.4\| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17...	66	2e-07
7	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	66	2e-07
8	dbj\|AK102218.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	66	2e-07
9	dbj\|AK063754.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	66	2e-07
10	gb\|AY108127.1\| Zea mays PCO088339 mRNA sequence	58	4e-05
11	ref\|NM_204276.1\| Gallus gallus breast cancer 2, early onset (BRC...	48	0.040
12	gb\|AY083934.1\| Gallus gallus breast cancer susceptibility protei...	48	0.040
13	dbj\|AB066374.1\| Gallus gallus brca2 mRNA for tumor suppressor BR...	48	0.040
14	ref\|NM_101582.2\| Arabidopsis thaliana unknown protein AT1G17210 ...	42	2.5
15	gb\|AC007651.2\| Arabidopsis thaliana chromosome I BAC F20D23 geno...	42	2.5
16	gb\|AC098722.3\| Mus musculus BAC clone RP23-3B20 from 14, complet...	42	2.5
17	emb\|AL162851.10\| Human DNA sequence from clone RP11-186M12 on ch...	42	2.5
18	dbj\|BA000004.3\| Bacillus halodurans C-125 DNA, complete genome	42	2.5
19	emb\|BX072566.10\| Human DNA sequence from clone RP11-25L22 on chr...	42	2.5
20	dbj\|BS000002.1\| Pan troglodytes chromosome 22 clone:PTB-056N14, ...	42	2.5
21	emb\|AL163204.2\|HS21C004 Homo sapiens chromosome 21 segment HS21C004	42	2.5
22	emb\|AL050303.4\|HS214G14 Homo sapiens chromosome 21 PAC RPCIP704G...	42	2.5
23	dbj\|AP005670.1\| Homo sapiens genomic DNA, chromosome 18 clone:RP...	42	2.5
24	gb\|AC154387.2\| Mus musculus BAC clone RP23-10K1 from chromosome ...	40	9.8
25	gb\|AC158397.2\| Mus musculus BAC clone RP23-274H19 from chromosom...	40	9.8
26	gb\|AY267200.1\| Penaeus monodon hemocyte kazal-type proteinase in...	40	9.8
27	gb\|AC122354.4\| Mus musculus BAC clone RP23-401A2 from chromosome...	40	9.8
28	emb\|AL138885.21\| Human DNA sequence from clone RP1-290I10 on chr...	40	9.8
29	gb\|AC096845.2\| Takifugu rubripes clone 214J14, complete sequence	40	9.8
30	emb\|AL049561.17\|HSDA109P7 Human DNA sequence from clone RP6-109P...	40	9.8
31	ref\|XM_964459.1\| PREDICTED: Tribolium castaneum similar to CG152...	40	9.8
32	gb\|AC068205.25\| Homo sapiens chromosome 11, clone RP11-472I20, c...	40	9.8
33	emb\|AL672169.13\| Mouse DNA sequence from clone RP23-357I18 on ch...	40	9.8
34	gb\|AC004615.1\|AC004615 Homo sapiens BAC clone GS1-405L21 from 5p...	40	9.8
35	emb\|Z73418.1\|HSU55E4 Human DNA sequence from clone LL0XNC01-55E4...	40	9.8

>ref|XM_476650.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3250

 Score =  315 bits (159), Expect = 1e-82
 Identities = 427/515 (82%), Gaps = 6/515 (1%)
 Strand = Plus / Plus

                                                                        
Query: 87   gtggttcaactaaagctgattcggtcgagagtggagagaagatgagccatgccagaggcc 146
            |||||||||||||||||||||| || ||||||||||||||||||||||||| || ||| |
Sbjct: 2407 gtggttcaactaaagctgattctgttgagagtggagagaagatgagccatggcataggtc 2466

                                                                        
Query: 147  aggagagtaacctgcaacattccctttcttgcaatgcaagagtttattctggcattgatt 206
            | ||||||||||| || |||||||||||| ||||||| ||||||||||||||||||||| 
Sbjct: 2467 atgagagtaacctacagcattccctttctcgcaatgctagagtttattctggcattgatc 2526

                                                                        
Query: 207  tatctaaagatgaagtgacccagactggtaaaatgctgacgaaggacgagtatgacccag 266
            | ||||||||||| ||||| |||| || |||| |||   | || ||||| ||||| ||||
Sbjct: 2527 tgtctaaagatgaggtgacacagattgctaaattgccagcaaatgacgactatgatccag 2586

                                                                        
Query: 267  gaaatgatcttggagcaacgaatggggaaaatgattctgaaacgggtcttccagagtttg 326
            || ||||||||| ||||   || |||| |||||| | |||| | ||||||||||| ||||
Sbjct: 2587 gagatgatcttgcagca---aacgggggaaatgactatgaagcaggtcttccagaatttg 2643

                                                                        
Query: 327  atccaatcaagcatcacaacaactattgtccatgggttaatggatatgttgccactgctt 386
            | ||||| |  ||||||||||| ||||| |||||||| |||||| |||||||  | ||||
Sbjct: 2644 acccaattagtcatcacaacaattattgcccatgggtaaatggacatgttgctgcggctt 2703

                                                                        
Query: 387  gcactatgaatactggttccagcacaaatagtgcagcattttgtggctggcagcttacag 446
            ||  ||| |||||||||||||||||   |||| | | | |||  ||||||||||||||||
Sbjct: 2704 gctgtatcaatactggttccagcac---tagtaccggactttccggctggcagcttacag 2760

                                                                        
Query: 447  tagatgcacttgagactgtccagtctcttggtcaaaaccagtatcaagccatgaagtctg 506
            |||||||||| || ||| |||||||||||| ||||  |||  |||||   |||  |||||
Sbjct: 2761 tagatgcactggaaactatccagtctcttgctcaagcccaaaatcaaattatgccgtctg 2820

                                                                        
Query: 507  attctgcggcatcactatataaggatgaccacgccgcacctagccacaagctgctgaaaa 566
            | |||||||||||||| |||||||||||||| |  || ||||||| ||||||| ||||||
Sbjct: 2821 actctgcggcatcactgtataaggatgaccatgtggcgcctagccgcaagctgttgaaaa 2880

                                               
Query: 567  ggccaaaacacagcaagtgctaactgaagcgcctc 601
            || | |  |||||||| || ||| |||||| ||||
Sbjct: 2881 gggctagccacagcaaatgttaattgaagctcctc 2915



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 70/79 (88%)
 Strand = Plus / Plus

                                                                        
Query: 17   gatgctggtcgagaagagcctcagggtgatagccacgatgtggcatctcagttagtgggt 76
            |||| ||| |||||||| ||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 2322 gatgttggccgagaagaacctcagggtgatagccaagatgtggcatctcggttagtgggt 2381

                               
Query: 77   cgagtggacagtggttcaa 95
             |||  |||||||| ||||
Sbjct: 2382 agagctgacagtggctcaa 2400

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>dbj|AK073749.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070M17, full
            insert sequence
          Length = 3250

 Score =  315 bits (159), Expect = 1e-82
 Identities = 427/515 (82%), Gaps = 6/515 (1%)
 Strand = Plus / Plus

                                                                        
Query: 87   gtggttcaactaaagctgattcggtcgagagtggagagaagatgagccatgccagaggcc 146
            |||||||||||||||||||||| || ||||||||||||||||||||||||| || ||| |
Sbjct: 2407 gtggttcaactaaagctgattctgttgagagtggagagaagatgagccatggcataggtc 2466

                                                                        
Query: 147  aggagagtaacctgcaacattccctttcttgcaatgcaagagtttattctggcattgatt 206
            | ||||||||||| || |||||||||||| ||||||| ||||||||||||||||||||| 
Sbjct: 2467 atgagagtaacctacagcattccctttctcgcaatgctagagtttattctggcattgatc 2526

                                                                        
Query: 207  tatctaaagatgaagtgacccagactggtaaaatgctgacgaaggacgagtatgacccag 266
            | ||||||||||| ||||| |||| || |||| |||   | || ||||| ||||| ||||
Sbjct: 2527 tgtctaaagatgaggtgacacagattgctaaattgccagcaaatgacgactatgatccag 2586

                                                                        
Query: 267  gaaatgatcttggagcaacgaatggggaaaatgattctgaaacgggtcttccagagtttg 326
            || ||||||||| ||||   || |||| |||||| | |||| | ||||||||||| ||||
Sbjct: 2587 gagatgatcttgcagca---aacgggggaaatgactatgaagcaggtcttccagaatttg 2643

                                                                        
Query: 327  atccaatcaagcatcacaacaactattgtccatgggttaatggatatgttgccactgctt 386
            | ||||| |  ||||||||||| ||||| |||||||| |||||| |||||||  | ||||
Sbjct: 2644 acccaattagtcatcacaacaattattgcccatgggtaaatggacatgttgctgcggctt 2703

                                                                        
Query: 387  gcactatgaatactggttccagcacaaatagtgcagcattttgtggctggcagcttacag 446
            ||  ||| |||||||||||||||||   |||| | | | |||  ||||||||||||||||
Sbjct: 2704 gctgtatcaatactggttccagcac---tagtaccggactttccggctggcagcttacag 2760

                                                                        
Query: 447  tagatgcacttgagactgtccagtctcttggtcaaaaccagtatcaagccatgaagtctg 506
            |||||||||| || ||| |||||||||||| ||||  |||  |||||   |||  |||||
Sbjct: 2761 tagatgcactggaaactatccagtctcttgctcaagcccaaaatcaaattatgccgtctg 2820

                                                                        
Query: 507  attctgcggcatcactatataaggatgaccacgccgcacctagccacaagctgctgaaaa 566
            | |||||||||||||| |||||||||||||| |  || ||||||| ||||||| ||||||
Sbjct: 2821 actctgcggcatcactgtataaggatgaccatgtggcgcctagccgcaagctgttgaaaa 2880

                                               
Query: 567  ggccaaaacacagcaagtgctaactgaagcgcctc 601
            || | |  |||||||| || ||| |||||| ||||
Sbjct: 2881 gggctagccacagcaaatgttaattgaagctcctc 2915



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                        
Query: 26   cgagaagagcctcagggtgatagccacgatgtggcatctcagttagtgggtcgagtggac 85
            |||||||| |||||| |||||||||| ||||||||||||| |||||||||| |||  |||
Sbjct: 2331 cgagaagaacctcagagtgatagccaagatgtggcatctcggttagtgggtagagctgac 2390

                      
Query: 86   agtggttcaa 95
            ||||| ||||
Sbjct: 2391 agtggctcaa 2400

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  184 bits (93), Expect = 3e-43
 Identities = 168/193 (87%)
 Strand = Plus / Minus

                                                                           
Query: 87      gtggttcaactaaagctgattcggtcgagagtggagagaagatgagccatgccagaggcc 146
               |||||||||||||||||||||| || ||||||||||||||||||||||||| || ||| |
Sbjct: 2667940 gtggttcaactaaagctgattctgttgagagtggagagaagatgagccatggcataggtc 2667881

                                                                           
Query: 147     aggagagtaacctgcaacattccctttcttgcaatgcaagagtttattctggcattgatt 206
               | ||||||||||| || |||||||||||| ||||||| ||||||||||||||||||||| 
Sbjct: 2667880 atgagagtaacctacagcattccctttctcgcaatgctagagtttattctggcattgatc 2667821

                                                                           
Query: 207     tatctaaagatgaagtgacccagactggtaaaatgctgacgaaggacgagtatgacccag 266
               | ||||||||||| ||||| |||| || |||| |||   | || ||||| ||||| ||||
Sbjct: 2667820 tgtctaaagatgaggtgacacagattgctaaattgccagcaaatgacgactatgatccag 2667761

                            
Query: 267     gaaatgatcttgg 279
               || ||||||||||
Sbjct: 2667760 gagatgatcttgg 2667748



 Score =  125 bits (63), Expect = 2e-25
 Identities = 197/241 (81%), Gaps = 3/241 (1%)
 Strand = Plus / Minus

                                                                           
Query: 290     ggggaaaatgattctgaaacgggtcttccagagtttgatccaatcaagcatcacaacaac 349
               |||| |||||| | |||| | ||||||||||| ||||| ||||| |  ||||||||||| 
Sbjct: 2667418 gggggaaatgactatgaagcaggtcttccagaatttgacccaattagtcatcacaacaat 2667359

                                                                           
Query: 350     tattgtccatgggttaatggatatgttgccactgcttgcactatgaatactggttccagc 409
               ||||| |||||||| |||||| |||||||  | ||||||  ||| |||||||||||||||
Sbjct: 2667358 tattgcccatgggtaaatggacatgttgctgcggcttgctgtatcaatactggttccagc 2667299

                                                                           
Query: 410     acaaatagtgcagcattttgtggctggcagcttacagtagatgcacttgagactgtccag 469
               ||   |||| | | | |||  |||||||||||||||||||||||||| || ||| |||||
Sbjct: 2667298 ac---tagtaccggactttccggctggcagcttacagtagatgcactggaaactatccag 2667242

                                                                           
Query: 470     tctcttggtcaaaaccagtatcaagccatgaagtctgattctgcggcatcactatataag 529
               ||||||| ||||  |||  |||||   |||  |||||| |||||||||||||| ||||||
Sbjct: 2667241 tctcttgctcaagcccaaaatcaaattatgccgtctgactctgcggcatcactgtataag 2667182

                
Query: 530     g 530
               |
Sbjct: 2667181 g 2667181



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 70/79 (88%)
 Strand = Plus / Minus

                                                                           
Query: 17      gatgctggtcgagaagagcctcagggtgatagccacgatgtggcatctcagttagtgggt 76
               |||| ||| |||||||| ||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 2668025 gatgttggccgagaagaacctcagggtgatagccaagatgtggcatctcggttagtgggt 2667966

                                  
Query: 77      cgagtggacagtggttcaa 95
                |||  |||||||| ||||
Sbjct: 2667965 agagctgacagtggctcaa 2667947

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>dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1027_G06
          Length = 121885

 Score =  184 bits (93), Expect = 3e-43
 Identities = 168/193 (87%)
 Strand = Plus / Minus

                                                                         
Query: 87    gtggttcaactaaagctgattcggtcgagagtggagagaagatgagccatgccagaggcc 146
             |||||||||||||||||||||| || ||||||||||||||||||||||||| || ||| |
Sbjct: 93658 gtggttcaactaaagctgattctgttgagagtggagagaagatgagccatggcataggtc 93599

                                                                         
Query: 147   aggagagtaacctgcaacattccctttcttgcaatgcaagagtttattctggcattgatt 206
             | ||||||||||| || |||||||||||| ||||||| ||||||||||||||||||||| 
Sbjct: 93598 atgagagtaacctacagcattccctttctcgcaatgctagagtttattctggcattgatc 93539

                                                                         
Query: 207   tatctaaagatgaagtgacccagactggtaaaatgctgacgaaggacgagtatgacccag 266
             | ||||||||||| ||||| |||| || |||| |||   | || ||||| ||||| ||||
Sbjct: 93538 tgtctaaagatgaggtgacacagattgctaaattgccagcaaatgacgactatgatccag 93479

                          
Query: 267   gaaatgatcttgg 279
             || ||||||||||
Sbjct: 93478 gagatgatcttgg 93466



 Score =  125 bits (63), Expect = 2e-25
 Identities = 197/241 (81%), Gaps = 3/241 (1%)
 Strand = Plus / Minus

                                                                         
Query: 290   ggggaaaatgattctgaaacgggtcttccagagtttgatccaatcaagcatcacaacaac 349
             |||| |||||| | |||| | ||||||||||| ||||| ||||| |  ||||||||||| 
Sbjct: 93136 gggggaaatgactatgaagcaggtcttccagaatttgacccaattagtcatcacaacaat 93077

                                                                         
Query: 350   tattgtccatgggttaatggatatgttgccactgcttgcactatgaatactggttccagc 409
             ||||| |||||||| |||||| |||||||  | ||||||  ||| |||||||||||||||
Sbjct: 93076 tattgcccatgggtaaatggacatgttgctgcggcttgctgtatcaatactggttccagc 93017

                                                                         
Query: 410   acaaatagtgcagcattttgtggctggcagcttacagtagatgcacttgagactgtccag 469
             ||   |||| | | | |||  |||||||||||||||||||||||||| || ||| |||||
Sbjct: 93016 ac---tagtaccggactttccggctggcagcttacagtagatgcactggaaactatccag 92960

                                                                         
Query: 470   tctcttggtcaaaaccagtatcaagccatgaagtctgattctgcggcatcactatataag 529
             ||||||| ||||  |||  |||||   |||  |||||| |||||||||||||| ||||||
Sbjct: 92959 tctcttgctcaagcccaaaatcaaattatgccgtctgactctgcggcatcactgtataag 92900

              
Query: 530   g 530
             |
Sbjct: 92899 g 92899



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 70/79 (88%)
 Strand = Plus / Minus

                                                                         
Query: 17    gatgctggtcgagaagagcctcagggtgatagccacgatgtggcatctcagttagtgggt 76
             |||| ||| |||||||| ||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 93743 gatgttggccgagaagaacctcagggtgatagccaagatgtggcatctcggttagtgggt 93684

                                
Query: 77    cgagtggacagtggttcaa 95
              |||  |||||||| ||||
Sbjct: 93683 agagctgacagtggctcaa 93665

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 78/93 (83%)
 Strand = Plus / Minus

                                                                            
Query: 278      ggagcaacgaatggggaaaatgattctgaaacgggtcttccagagtttgatccaatcaag 337
                |||||||| ||||| |||||||||| |||| | || |||||||| ||||||||  | |||
Sbjct: 32288750 ggagcaacaaatggagaaaatgattttgaatcaggacttccagaatttgatcctgttaag 32288691

                                                 
Query: 338      catcacaacaactattgtccatgggttaatgga 370
                ||||||||||  || || |||||||| ||||||
Sbjct: 32288690 catcacaacagttactgcccatgggtaaatgga 32288658



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                          
Query: 88       tggttcaactaaagctgattcggtcgagagtggagagaagat 129
                |||||| |||||||||||||| || ||||||||||| |||||
Sbjct: 32289479 tggttccactaaagctgattctgttgagagtggagaaaagat 32289438

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>gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence
          Length = 102751

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 78/93 (83%)
 Strand = Plus / Minus

                                                                         
Query: 278   ggagcaacgaatggggaaaatgattctgaaacgggtcttccagagtttgatccaatcaag 337
             |||||||| ||||| |||||||||| |||| | || |||||||| ||||||||  | |||
Sbjct: 22517 ggagcaacaaatggagaaaatgattttgaatcaggacttccagaatttgatcctgttaag 22458

                                              
Query: 338   catcacaacaactattgtccatgggttaatgga 370
             ||||||||||  || || |||||||| ||||||
Sbjct: 22457 catcacaacagttactgcccatgggtaaatgga 22425



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                       
Query: 88    tggttcaactaaagctgattcggtcgagagtggagagaagat 129
             |||||| |||||||||||||| || ||||||||||| |||||
Sbjct: 23246 tggttccactaaagctgattctgttgagagtggagaaaagat 23205

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 78/93 (83%)
 Strand = Plus / Minus

                                                                            
Query: 278      ggagcaacgaatggggaaaatgattctgaaacgggtcttccagagtttgatccaatcaag 337
                |||||||| ||||| |||||||||| |||| | || |||||||| ||||||||  | |||
Sbjct: 32379260 ggagcaacaaatggagaaaatgattttgaatcaggacttccagaatttgatcctgttaag 32379201

                                                 
Query: 338      catcacaacaactattgtccatgggttaatgga 370
                ||||||||||  || || |||||||| ||||||
Sbjct: 32379200 catcacaacagttactgcccatgggtaaatgga 32379168



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                          
Query: 88       tggttcaactaaagctgattcggtcgagagtggagagaagat 129
                |||||| |||||||||||||| || ||||||||||| |||||
Sbjct: 32379989 tggttccactaaagctgattctgttgagagtggagaaaagat 32379948

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>dbj|AK102218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087L08, full
            insert sequence
          Length = 3325

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 78/93 (83%)
 Strand = Plus / Plus

                                                                        
Query: 278  ggagcaacgaatggggaaaatgattctgaaacgggtcttccagagtttgatccaatcaag 337
            |||||||| ||||| |||||||||| |||| | || |||||||| ||||||||  | |||
Sbjct: 2591 ggagcaacaaatggagaaaatgattttgaatcaggacttccagaatttgatcctgttaag 2650

                                             
Query: 338  catcacaacaactattgtccatgggttaatgga 370
            ||||||||||  || || |||||||| ||||||
Sbjct: 2651 catcacaacagttactgcccatgggtaaatgga 2683



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                      
Query: 88   tggttcaactaaagctgattcggtcgagagtggagagaagat 129
            |||||| |||||||||||||| || ||||||||||| |||||
Sbjct: 2380 tggttccactaaagctgattctgttgagagtggagaaaagat 2421

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>dbj|AK063754.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-A04, full
           insert sequence
          Length = 577

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 78/93 (83%)
 Strand = Plus / Plus

                                                                       
Query: 278 ggagcaacgaatggggaaaatgattctgaaacgggtcttccagagtttgatccaatcaag 337
           |||||||| ||||| |||||||||| |||| | || |||||||| ||||||||  | |||
Sbjct: 166 ggagcaacaaatggagaaaatgattttgaatcaggacttccagaatttgatcctgttaag 225

                                            
Query: 338 catcacaacaactattgtccatgggttaatgga 370
           ||||||||||  || || |||||||| ||||||
Sbjct: 226 catcacaacagttactgcccatgggtaaatgga 258

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>gb|AY108127.1| Zea mays PCO088339 mRNA sequence
          Length = 666

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 110/137 (80%)
 Strand = Plus / Plus

                                                                       
Query: 431 ggctggcagcttacagtagatgcacttgagactgtccagtctcttggtcaaaaccagtat 490
           ||||||||||| || ||||||||  | |||||| | ||||||||||||||   |||  ||
Sbjct: 81  ggctggcagctcacggtagatgccatcgagactctgcagtctcttggtcaggcccaaaat 140

                                                                       
Query: 491 caagccatgaagtctgattctgcggcatcactatataaggatgaccacgccgcacctagc 550
           ||  | ||| |||| || |||||||| ||| |||||||||| || |||| | | ||||||
Sbjct: 141 cagacgatgcagtcagactctgcggcttcattatataaggacgatcacgtcccgcctagc 200

                            
Query: 551 cacaagctgctgaaaag 567
           |  ||||||||||||||
Sbjct: 201 cggaagctgctgaaaag 217

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>ref|NM_204276.1| Gallus gallus breast cancer 2, early onset (BRCA2), mRNA
          Length = 10310

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 276  ttggagcaacgaatggggaaaatgattctgaa 307
            ||||||||||||||| |||||||| |||||||
Sbjct: 3320 ttggagcaacgaatgtggaaaatgcttctgaa 3351

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>gb|AY083934.1| Gallus gallus breast cancer susceptibility protein (BRCA2) mRNA,
            complete cds
          Length = 10197

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 276  ttggagcaacgaatggggaaaatgattctgaa 307
            ||||||||||||||| |||||||| |||||||
Sbjct: 3323 ttggagcaacgaatgtggaaaatgcttctgaa 3354

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>dbj|AB066374.1| Gallus gallus brca2 mRNA for tumor suppressor BRCA2, complete cds
          Length = 10310

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 276  ttggagcaacgaatggggaaaatgattctgaa 307
            ||||||||||||||| |||||||| |||||||
Sbjct: 3320 ttggagcaacgaatgtggaaaatgcttctgaa 3351

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>ref|NM_101582.2| Arabidopsis thaliana unknown protein AT1G17210 mRNA, complete cds
          Length = 3348

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 208  atctaaagatgaagtgacccagact 232
            ||||||||| |||||||||||||||
Sbjct: 2565 atctaaagaagaagtgacccagact 2589

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>gb|AC007651.2| Arabidopsis thaliana chromosome I BAC F20D23 genomic sequence, complete
             sequence
          Length = 114935

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 208   atctaaagatgaagtgacccagact 232
             ||||||||| |||||||||||||||
Sbjct: 42342 atctaaagaagaagtgacccagact 42366

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>gb|AC098722.3| Mus musculus BAC clone RP23-3B20 from 14, complete sequence
          Length = 197946

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 621   ctaaacttggatccagctcaa 641
             |||||||||||||||||||||
Sbjct: 38267 ctaaacttggatccagctcaa 38287

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>emb|AL162851.10| Human DNA sequence from clone RP11-186M12 on chromosome 22, complete
             sequence
          Length = 172545

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 121   agagaagatgagccatgccag 141
             |||||||||||||||||||||
Sbjct: 42112 agagaagatgagccatgccag 42092

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>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome
          Length = 4202352

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 251     gacgagtatgacccaggaaatgatc 275
               ||||||||||||| |||||||||||
Sbjct: 2664768 gacgagtatgaccgaggaaatgatc 2664792

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>emb|BX072566.10| Human DNA sequence from clone RP11-25L22 on chromosome 22, complete
             sequence
          Length = 164239

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 121   agagaagatgagccatgccag 141
             |||||||||||||||||||||
Sbjct: 51688 agagaagatgagccatgccag 51708

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>dbj|BS000002.1| Pan troglodytes chromosome 22 clone:PTB-056N14, map 22, complete
             sequences
          Length = 168180

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 121   agagaagatgagccatgccag 141
             |||||||||||||||||||||
Sbjct: 74347 agagaagatgagccatgccag 74327

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>emb|AL163204.2|HS21C004 Homo sapiens chromosome 21 segment HS21C004
          Length = 340000

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 121   agagaagatgagccatgccag 141
             |||||||||||||||||||||
Sbjct: 56441 agagaagatgagccatgccag 56421

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>emb|AL050303.4|HS214G14 Homo sapiens chromosome 21 PAC RPCIP704G14214Q2, complete sequence
          Length = 166239

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 121   agagaagatgagccatgccag 141
             |||||||||||||||||||||
Sbjct: 51855 agagaagatgagccatgccag 51835

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>dbj|AP005670.1| Homo sapiens genomic DNA, chromosome 18 clone:RP11-72P4, complete
             sequence
          Length = 184770

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 121   agagaagatgagccatgccag 141
             |||||||||||||||||||||
Sbjct: 50377 agagaagatgagccatgccag 50397

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>gb|AC154387.2| Mus musculus BAC clone RP23-10K1 from chromosome 16, complete sequence
          Length = 212628

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 407    agcacaaatagtgcagcatt 426
              ||||||||||||||||||||
Sbjct: 120753 agcacaaatagtgcagcatt 120734

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>gb|AC158397.2| Mus musculus BAC clone RP23-274H19 from chromosome 16, complete sequence
          Length = 197843

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 358    atgggttaatggatatgttg 377
              ||||||||||||||||||||
Sbjct: 175427 atgggttaatggatatgttg 175446

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>gb|AY267200.1| Penaeus monodon hemocyte kazal-type proteinase inhibitor mRNA,
           complete cds
          Length = 1748

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   attcggcacgagggaggatg 20
           ||||||||||||||||||||
Sbjct: 171 attcggcacgagggaggatg 152

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>gb|AC122354.4| Mus musculus BAC clone RP23-401A2 from chromosome 12, complete sequence
          Length = 192581

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 555    agctgctgaaaaggccaaaa 574
              ||||||||||||||||||||
Sbjct: 132151 agctgctgaaaaggccaaaa 132132

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>emb|AL138885.21| Human DNA sequence from clone RP1-290I10 on chromosome 6 Contains a
            ribosomal protein L7 (RPL7) pseudogene, the TFAP2A gene
            for transcription factor AP-2 alpha (activating
            enhancer-binding protein 2 alpha), four novel genes, a
            mitochondrial ribosomal protein L47 (MRPL47) pseudogene
            and 11 CpG islands, complete sequence
          Length = 180133

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 568  gccaaaacacagcaagtgct 587
            ||||||||||||||||||||
Sbjct: 9717 gccaaaacacagcaagtgct 9698

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>gb|AC096845.2| Takifugu rubripes clone 214J14, complete sequence
          Length = 134105

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 557   ctgctgaaaaggccaaaaca 576
             ||||||||||||||||||||
Sbjct: 20447 ctgctgaaaaggccaaaaca 20428

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>emb|AL049561.17|HSDA109P7 Human DNA sequence from clone RP6-109P7 on chromosome Xq25-26.3,
             complete sequence
          Length = 103989

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 389   actatgaatactggttccag 408
             ||||||||||||||||||||
Sbjct: 41589 actatgaatactggttccag 41570

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>ref|XM_964459.1| PREDICTED: Tribolium castaneum similar to CG15288-PB, isoform B
            (LOC658046), mRNA
          Length = 9483

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 461  actgtccagtctcttggtca 480
            ||||||||||||||||||||
Sbjct: 2782 actgtccagtctcttggtca 2763

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>gb|AC068205.25| Homo sapiens chromosome 11, clone RP11-472I20, complete sequence
          Length = 205069

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 205    tttatctaaagatgaagtga 224
              ||||||||||||||||||||
Sbjct: 181284 tttatctaaagatgaagtga 181265

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>emb|AL672169.13| Mouse DNA sequence from clone RP23-357I18 on chromosome X, complete
             sequence
          Length = 217552

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 477   gtcaaaaccagtatcaagccatga 500
             ||||||||||||||||| ||||||
Sbjct: 84040 gtcaaaaccagtatcaaaccatga 84017

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>gb|AC004615.1|AC004615 Homo sapiens BAC clone GS1-405L21 from 5p15.2, complete sequence
          Length = 235141

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 156   acctgcaacattccctttcttgca 179
             ||||||||||||||| ||||||||
Sbjct: 48910 acctgcaacattcccattcttgca 48933

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>emb|Z73418.1|HSU55E4 Human DNA sequence from clone LL0XNC01-55E4 on chromosome X, complete
             sequence
          Length = 46930

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 389   actatgaatactggttccag 408
             ||||||||||||||||||||
Sbjct: 41599 actatgaatactggttccag 41580


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,017,464
Number of Sequences: 3902068
Number of extensions: 6017464
Number of successful extensions: 113137
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112929
Number of HSP's gapped (non-prelim): 206
length of query: 719
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 696
effective length of database: 17,143,297,704
effective search space: 11931735201984
effective search space used: 11931735201984
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result