ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd24e13 |
|---|---|
| Clone Library Name | barley_pub |
>TOPB1_MOUSE (Q6ZQF0) DNA topoisomerase II-binding protein 1 (DNA topoisomerase| IIbeta-binding protein 1) (TopBP1) Length = 1515 Score = 45.1 bits (105), Expect(2) = 1e-05 Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Frame = +2 Query: 104 GGDYSGSLHP-KCTHLVVQSFAGRKFEHALKHGPRNGLFVVTLGWFVDCVRRNMRLDESL 280 GG Y G L +CTHL+VQ G+K+E A R + VTL WF D + + DES+ Sbjct: 226 GGQYMGQLKMNECTHLIVQEPKGQKYECA----RRWNVHCVTLQWFHDSIEKGFCQDESI 281 Query: 281 Y 283 Y Sbjct: 282 Y 282 Score = 34.3 bits (77), Expect = 0.31 Identities = 18/61 (29%), Positives = 26/61 (42%) Frame = +2 Query: 101 LGGDYSGSLHPKCTHLVVQSFAGRKFEHALKHGPRNGLFVVTLGWFVDCVRRNMRLDESL 280 LG +Y S TH + Q A K G+ +V+ W ++C + L ESL Sbjct: 932 LGAEYRWSFDETVTHFIYQGRANDS-NREYKSAKERGVHIVSEHWLLECAQEYKHLPESL 990 Query: 281 Y 283 Y Sbjct: 991 Y 991 Score = 31.2 bits (69), Expect = 2.6 Identities = 17/52 (32%), Positives = 26/52 (50%) Frame = +2 Query: 140 THLVVQSFAGRKFEHALKHGPRNGLFVVTLGWFVDCVRRNMRLDESLYSIKN 295 THL+V+ G K+E A K L V + W ++ R R DE+ + + N Sbjct: 696 THLIVKEPTGSKYEAAKKW----SLPAVNISWLLETARIGKRADENHFLVDN 743 Score = 23.5 bits (49), Expect(2) = 1e-05 Identities = 10/33 (30%), Positives = 16/33 (48%) Frame = +1 Query: 25 FAGLVVCVTGLSXXRGSQVKEAAEXAGRRLQRQ 123 F G ++CVTGL+ V++ G + Q Sbjct: 200 FLGCIICVTGLNGIHRKTVQQLTAKHGGQYMGQ 232
>TOPB1_HUMAN (Q92547) DNA topoisomerase 2-binding protein 1 (DNA topoisomerase| II-binding protein 1) (DNA topoisomerase IIbeta-binding protein 1) (TopBP1) Length = 1522 Score = 44.7 bits (104), Expect(2) = 2e-05 Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 11/133 (8%) Frame = +2 Query: 104 GGDYSGSLHP-KCTHLVVQSFAGRKFEHALKHGPRNGLFVVTLGWFVDCVRRNMRLDESL 280 GG Y G L +CTHL+VQ G+K+E A R + VT WF D + + DES+ Sbjct: 226 GGQYMGQLKMNECTHLIVQEPKGQKYECA----KRWNVHCVTTQWFFDSIEKGFCQDESI 281 Query: 281 Y------SIKNIGENGLPLGEYNRLVGLPVNEKSCLPPM---IFQDKACSGTTHKHQLQP 433 Y K + + P + N + +++ S + + + C+ K L+P Sbjct: 282 YKTEPRPEAKTMPNSSTPTSQINTIDSRTLSDVSNISNINASCVSESICNSLNSK--LEP 339 Query: 434 HREEPEH-DVFVF 469 E E+ DV F Sbjct: 340 TLENLENLDVSAF 352 Score = 35.4 bits (80), Expect = 0.14 Identities = 19/52 (36%), Positives = 28/52 (53%) Frame = +2 Query: 140 THLVVQSFAGRKFEHALKHGPRNGLFVVTLGWFVDCVRRNMRLDESLYSIKN 295 THL+++ G K+E A K L VT+ W ++ R R DES + I+N Sbjct: 693 THLILKERGGSKYEAAKKWN----LPAVTIAWLLETARTGKRADESHFLIEN 740 Score = 33.9 bits (76), Expect = 0.40 Identities = 19/61 (31%), Positives = 25/61 (40%) Frame = +2 Query: 101 LGGDYSGSLHPKCTHLVVQSFAGRKFEHALKHGPRNGLFVVTLGWFVDCVRRNMRLDESL 280 LG DY S TH + Q K G+ +V+ W +DC + L ESL Sbjct: 930 LGADYRWSFDETVTHFIYQG-RPNDTNREYKSVKERGVHIVSEHWLLDCAQECKHLPESL 988 Query: 281 Y 283 Y Sbjct: 989 Y 989 Score = 22.7 bits (47), Expect(2) = 2e-05 Identities = 10/33 (30%), Positives = 16/33 (48%) Frame = +1 Query: 25 FAGLVVCVTGLSXXRGSQVKEAAEXAGRRLQRQ 123 F G ++CVTGL +V++ G + Q Sbjct: 200 FLGCIICVTGLCGLDRKEVQQLTVKHGGQYMGQ 232
>RAD4_SCHPO (P32372) S-M checkpoint control protein rad4 (Protein cut5) (P74)| Length = 648 Score = 38.5 bits (88), Expect = 0.016 Identities = 25/78 (32%), Positives = 39/78 (50%) Frame = +2 Query: 104 GGDYSGSLHPKCTHLVVQSFAGRKFEHALKHGPRNGLFVVTLGWFVDCVRRNMRLDESLY 283 GG + L THL+ + +GRK+E+ALK + VV + W ++RN L+ + Sbjct: 128 GGTFCPDLTRDVTHLIAGTSSGRKYEYALKW----KINVVCVEWLWQSIQRNAVLEPQYF 183 Query: 284 SIKNIGENGLPLGEYNRL 337 + E + LG Y RL Sbjct: 184 QLDMPAEK-IGLGAYVRL 200
>RT107_YEAST (P38850) Regulator of Ty1 transposition protein 107| Length = 1070 Score = 37.0 bits (84), Expect = 0.047 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Frame = +2 Query: 101 LGGDYSGSLHPKCTHLVVQSFAGRKFEHALKHG--PRNGLFVVTLGWFVDCVRRNMRLD 271 LGG + L K THL+ +S G+KF+ A K P+N + V W C N +L+ Sbjct: 402 LGGLSTPELTRKNTHLITKSTIGKKFKVAKKWSLDPQNAIIVTNHMWLEQCYMNNSKLN 460
>ECT2_MOUSE (Q07139) ECT2 protein (Epithelial cell-transforming sequence 2| oncogene) Length = 738 Score = 33.1 bits (74), Expect = 0.68 Identities = 19/60 (31%), Positives = 28/60 (46%) Frame = +2 Query: 104 GGDYSGSLHPKCTHLVVQSFAGRKFEHALKHGPRNGLFVVTLGWFVDCVRRNMRLDESLY 283 GG Y +CTHL+V+ + L P LFVV WF ++ + R E++Y Sbjct: 122 GGSYLPVGDERCTHLIVEENTVKD----LPFEPSKKLFVVKQEWFWGSIQMDARAGETMY 177
>BRC1_SCHPO (Q10337) BRCT-containing protein 1| Length = 878 Score = 32.3 bits (72), Expect = 1.2 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = +2 Query: 134 KCTHLVV-QSFAGRKFEHALKHGPRNGLFVVTLGWFVDCVRRNMRLDESLYSIKNIGENG 310 KCTHL+ + KF ++ +GP VVT+ W C++ + +DE Y + N E Sbjct: 696 KCTHLIAPRILRTSKFLCSIPYGP----CVVTMDWINSCLKTHEIVDEEPY-LLNDPEKE 750 Query: 311 LPLG 322 L LG Sbjct: 751 LELG 754 Score = 30.8 bits (68), Expect = 3.4 Identities = 18/64 (28%), Positives = 28/64 (43%) Frame = +2 Query: 104 GGDYSGSLHPKCTHLVVQSFAGRKFEHALKHGPRNGLFVVTLGWFVDCVRRNMRLDESLY 283 GG +S L THL S G K + L P + ++ W +DC++ +D+ Y Sbjct: 136 GGRFSKGLMKSMTHLFTYSGMGAKCKKVLDK-PSLSIKLIHPQWLLDCLQFGQLIDQDPY 194 Query: 284 SIKN 295 N Sbjct: 195 LFPN 198
>CAT8_YEAST (P39113) Regulatory protein CAT8| Length = 1433 Score = 32.3 bits (72), Expect = 1.2 Identities = 18/55 (32%), Positives = 27/55 (49%) Frame = +2 Query: 317 LGEYNRLVGLPVNEKSCLPPMIFQDKACSGTTHKHQLQPHREEPEHDVFVFTNDT 481 L YNRL+GLP + L P+ S + RE PEH+ +++ ND+ Sbjct: 918 LNYYNRLMGLPPATTTSLKPLFGSQSKNSLENRQRTPNVKRENPEHE-YLYGNDS 971
>ECT2_HUMAN (Q9H8V3) ECT2 protein (Epithelial cell-transforming sequence 2| oncogene) Length = 883 Score = 32.0 bits (71), Expect = 1.5 Identities = 19/60 (31%), Positives = 27/60 (45%) Frame = +2 Query: 104 GGDYSGSLHPKCTHLVVQSFAGRKFEHALKHGPRNGLFVVTLGWFVDCVRRNMRLDESLY 283 GG Y +CTHLVV+ L P L+VV WF ++ + R E++Y Sbjct: 266 GGKYLPLGDERCTHLVVE----ENIVKDLPFEPSKKLYVVKQEWFWGSIQMDARAGETMY 321
>CINA_CLOTE (Q898T5) CinA-like protein| Length = 409 Score = 31.2 bits (69), Expect = 2.6 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 388 LKNHWWKA*LLINRKSNKPVVFPKRQAVLPNVLDTVQGFI 269 +KN++ K ++N + K FP++ +LPN T G I Sbjct: 99 IKNYFKKQGKILNENNEKQAYFPEKSTILPNNFGTAPGCI 138
>CLPC_CHLPN (Q9Z8A6) Probable ATP-dependent Clp protease ATP-binding subunit| Length = 845 Score = 30.8 bits (68), Expect = 3.4 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = +2 Query: 437 REEPEHDVFVFTNDTIYIDPGISGDMKKKISDAATSEDAKLLDHWFIG 580 R+E E + +Y DP ++G +KK A +E+A LL+H ++G Sbjct: 60 RQEVERLIGYGPEIQVYGDPALTGRVKKSFESA--NEEASLLEHNYVG 105
>ILVC_PHOPR (Q6LVZ5) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 494 Score = 30.8 bits (68), Expect = 3.4 Identities = 17/48 (35%), Positives = 22/48 (45%) Frame = +2 Query: 197 GPRNGLFVVTLGWFVDCVRRNMRLDESLYSIKNIGENGLPLGEYNRLV 340 G GL + G V R +DE S KN ENG +G Y +L+ Sbjct: 49 GLNQGLNMRDSGLDVSYALRQAAIDEQRQSYKNAKENGFDVGSYEQLI 96
>Y2149_BRAJA (Q45221) Hypothetical protein blr2149 (ORF7)| Length = 516 Score = 29.3 bits (64), Expect = 9.9 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 5/35 (14%) Frame = +1 Query: 85 EAAEXAGRRLQRQPAPQMH-----SPRGAELRRPQ 174 +A + A R LQRQP P H +P GAEL PQ Sbjct: 93 DAVQTATRFLQRQPDPYAHAVPEDAPIGAELILPQ 127
>PARP4_HUMAN (Q9UKK3) Poly [ADP-ribose] polymerase 4 (EC 2.4.2.30) (PARP-4)| (Vault poly(ADP-ribose) polymerase) (VPARP) (193-kDa vault protein) (PARP-related/IalphaI-related H5/proline-rich) (PH5P) Length = 1724 Score = 29.3 bits (64), Expect = 9.9 Identities = 16/60 (26%), Positives = 30/60 (50%) Frame = +2 Query: 104 GGDYSGSLHPKCTHLVVQSFAGRKFEHALKHGPRNGLFVVTLGWFVDCVRRNMRLDESLY 283 GG +S SL+P+CTH+++ + A ++ L +N + + + +R LD Y Sbjct: 34 GGKFSFSLNPQCTHIILDN-ADVLSQYQLNSIQKNHVHIANPDFIWKSIREKRLLDVKNY 92
>ILVC_VIBVY (Q7MQH3) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 494 Score = 29.3 bits (64), Expect = 9.9 Identities = 17/48 (35%), Positives = 21/48 (43%) Frame = +2 Query: 197 GPRNGLFVVTLGWFVDCVRRNMRLDESLYSIKNIGENGLPLGEYNRLV 340 G GL + G V R +DE S KN ENG +G Y L+ Sbjct: 49 GLNQGLNMRDSGLDVAYALRQAAIDEQRQSYKNAKENGFEVGSYETLI 96
>ILVC_VIBVU (Q8DDC8) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 494 Score = 29.3 bits (64), Expect = 9.9 Identities = 17/48 (35%), Positives = 21/48 (43%) Frame = +2 Query: 197 GPRNGLFVVTLGWFVDCVRRNMRLDESLYSIKNIGENGLPLGEYNRLV 340 G GL + G V R +DE S KN ENG +G Y L+ Sbjct: 49 GLNQGLNMRDSGLDVAYALRQAAIDEQRQSYKNAKENGFEVGSYETLI 96
>ILVC_VIBPA (Q87TN4) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 494 Score = 29.3 bits (64), Expect = 9.9 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = +2 Query: 197 GPRNGLFVVTLGWFVDCVRRNMRLDESLYSIKNIGENGLPLGEYNRLV 340 G GL + G V R +DE S KN +NG +G Y L+ Sbjct: 49 GLNQGLNMRDSGLDVSYALRQAAIDEQRQSFKNAKDNGFEVGSYETLI 96 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,704,610 Number of Sequences: 219361 Number of extensions: 1886807 Number of successful extensions: 5603 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5165 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5574 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5710231900 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
