ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd24e02 |
|---|---|
| Clone Library Name | barley_pub |
>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 30.4 bits (67), Expect = 2.9 Identities = 17/37 (45%), Positives = 20/37 (54%) Frame = +1 Query: 4 APSAIGVVGRRQRNPGGNNASPSAAATGPVGLAGARG 114 AP A G VG +N P+ A GP+G AGARG Sbjct: 1039 APGAPGPVGPAGKNGDRGETGPAGPA-GPIGPAGARG 1074
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 30.4 bits (67), Expect = 2.9 Identities = 17/37 (45%), Positives = 20/37 (54%) Frame = +1 Query: 4 APSAIGVVGRRQRNPGGNNASPSAAATGPVGLAGARG 114 AP A G VG +N P+ A GP+G AGARG Sbjct: 1039 APGAPGPVGPAGKNGDRGETGPAGPA-GPIGPAGARG 1074
>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)| (LC collagen) Length = 2944 Score = 29.6 bits (65), Expect = 4.9 Identities = 13/36 (36%), Positives = 17/36 (47%) Frame = -1 Query: 400 PEPTETRGKKNEGPIPNLGGGTGEKREEAC*NPPGP 293 P P +G+K E P +GG G + PPGP Sbjct: 2691 PGPKGDQGEKGERGTPGIGGFPGPSGNDGSAGPPGP 2726
>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 29.6 bits (65), Expect = 4.9 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = -1 Query: 385 TRGKKNEGPIPNLGGGTGEKREEAC*NPPGPRPE 284 T+G+K E P G G K + PPGPR E Sbjct: 806 TKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGE 839
>CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 29.6 bits (65), Expect = 4.9 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = -1 Query: 385 TRGKKNEGPIPNLGGGTGEKREEAC*NPPGPRPE 284 T+G+K E P G G K + PPGPR E Sbjct: 806 TKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGE 839
>CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 29.6 bits (65), Expect = 4.9 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = -1 Query: 385 TRGKKNEGPIPNLGGGTGEKREEAC*NPPGPRPE 284 T+G+K E P G G K + PPGPR E Sbjct: 808 TKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGE 841
>CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 29.6 bits (65), Expect = 4.9 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = -1 Query: 385 TRGKKNEGPIPNLGGGTGEKREEAC*NPPGPRPE 284 T+G+K E P G G K + PPGPR E Sbjct: 808 TKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGE 841
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 28.9 bits (63), Expect = 8.3 Identities = 17/37 (45%), Positives = 20/37 (54%) Frame = +1 Query: 4 APSAIGVVGRRQRNPGGNNASPSAAATGPVGLAGARG 114 AP A G VG ++ P+ A GPVG AGARG Sbjct: 1050 APGAPGPVGPAGKSGDRGETGPAGPA-GPVGPAGARG 1085
>CO4A3_BOVIN (Q28084) Collagen alpha-3(IV) chain (Fragment)| Length = 471 Score = 28.9 bits (63), Expect = 8.3 Identities = 14/36 (38%), Positives = 16/36 (44%) Frame = -1 Query: 400 PEPTETRGKKNEGPIPNLGGGTGEKREEAC*NPPGP 293 P P +GK E P G TGEK + C GP Sbjct: 184 PGPCGPKGKPGEDGPPGTPGPTGEKGNKGCKGEQGP 219
>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) (RPB1) (Fragment) Length = 467 Score = 28.9 bits (63), Expect = 8.3 Identities = 21/66 (31%), Positives = 27/66 (40%) Frame = +3 Query: 291 RGPGGF*QASSLFSPVPPPRLGIGPSFFFPLVSVGSGINQDPSFKLYRPVLHTSYCTSLR 470 R PGG+ S +SP P PS+ + N P+ Y P SY + Sbjct: 100 RSPGGYTPQSPSYSPTSPSYSPTSPSY------SPTSPNYSPTSPSYSPT-SPSYSPTSP 152 Query: 471 SYIPTS 488 SY PTS Sbjct: 153 SYSPTS 158
>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor| Length = 1460 Score = 28.9 bits (63), Expect = 8.3 Identities = 16/37 (43%), Positives = 19/37 (51%) Frame = +1 Query: 4 APSAIGVVGRRQRNPGGNNASPSAAATGPVGLAGARG 114 AP A G VG +N P+ A GP+G GARG Sbjct: 1046 APGAPGPVGPAGKNGDRGETGPAGPA-GPIGPVGARG 1081
>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RPB1) Length = 1970 Score = 28.9 bits (63), Expect = 8.3 Identities = 21/66 (31%), Positives = 27/66 (40%) Frame = +3 Query: 291 RGPGGF*QASSLFSPVPPPRLGIGPSFFFPLVSVGSGINQDPSFKLYRPVLHTSYCTSLR 470 R PGG+ S +SP P PS+ + N P+ Y P SY + Sbjct: 1603 RSPGGYTPQSPSYSPTSPSYSPTSPSY------SPTSPNYSPTSPSYSPT-SPSYSPTSP 1655 Query: 471 SYIPTS 488 SY PTS Sbjct: 1656 SYSPTS 1661
>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RPB1) Length = 1970 Score = 28.9 bits (63), Expect = 8.3 Identities = 21/66 (31%), Positives = 27/66 (40%) Frame = +3 Query: 291 RGPGGF*QASSLFSPVPPPRLGIGPSFFFPLVSVGSGINQDPSFKLYRPVLHTSYCTSLR 470 R PGG+ S +SP P PS+ + N P+ Y P SY + Sbjct: 1603 RSPGGYTPQSPSYSPTSPSYSPTSPSY------SPTSPNYSPTSPSYSPT-SPSYSPTSP 1655 Query: 471 SYIPTS 488 SY PTS Sbjct: 1656 SYSPTS 1661 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,113,386 Number of Sequences: 219361 Number of extensions: 914485 Number of successful extensions: 3342 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2741 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3332 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3696665728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
