ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd23o19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence 135 2e-28
2emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 48 0.031
3gb|AE009409.1| Agrobacterium tumefaciens str. C58 linear chromos... 46 0.12
4gb|AE008205.1| Agrobacterium tumefaciens str. C58 linear chromos... 46 0.12
5gb|AY325563.1| Uncultured bacterium clone GA54 putative dissimil... 46 0.12
6gb|AE012358.1| Xanthomonas campestris pv. campestris str. ATCC 3... 46 0.12
7gb|DQ010708.1| Unidentified bacterium clone 19g65 membrane bound... 46 0.12
8gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 46 0.12
9gb|AY955184.1| Uncultured bacterium clone GRAMJ4 putative dissim... 46 0.12
10gb|DQ233276.1| Uncultured bacterium clone 3_21 dissimilatory nit... 44 0.49
11gb|AY453381.1| Uncultured bacterium clone F89 dissimilatory memb... 44 0.49
12gb|DQ481169.1| Uncultured bacterium clone LT-075_12 membrane bou... 44 0.49
13gb|AF377946.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
14gb|AC147426.2| Oryza sativa chromosome 3 B1377B10 genomic seque... 42 1.9
15gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.9
16ref|XM_538685.2| PREDICTED: Canis familiaris similar to Cyclin-d... 42 1.9
17gb|CP000133.1| Rhizobium etli CFN 42, complete genome 42 1.9
18dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
19ref|NM_214098.1| Sus scrofa interleukin-18 receptor alpha chain ... 42 1.9
20dbj|AK120822.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
21emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 42 1.9
22dbj|AB079258.1| Sus scrofa IL-18Ra mRNA for interleukin-18 recep... 42 1.9
23ref|NM_197234.1| Oryza sativa (japonica cultivar-group) hypothet... 40 7.6
24gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome... 40 7.6
25gb|AE009008.1| Agrobacterium tumefaciens str. C58 circular chrom... 40 7.6
26gb|DQ481148.1| Uncultured bacterium clone LT-600_05 membrane bou... 40 7.6
27emb|CR732210.2|CNS0GRX3 Tetraodon nigroviridis full-length cDNA 40 7.6
28emb|CR650047.2|CNS0F0JP Tetraodon nigroviridis full-length cDNA 40 7.6
29emb|CR639895.2|CNS0ESPP Tetraodon nigroviridis full-length cDNA 40 7.6
30gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 7.6
31gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 7.6
32gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 geno... 40 7.6
33emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 40 7.6
34dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 7.6
35gb|AE011933.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 7.6
36gb|AE012387.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 7.6
37gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 40 7.6
38gb|DP000053.1| Oryctolagus cuniculus target 126 genomic scaffold 40 7.6
39dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
40dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
41dbj|AP005741.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
42gb|AF191325.1|AF191325 Mus musculus SRY-related protein SOX 8 (S... 40 7.6
43emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 7.6
44dbj|AK060316.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.6
45gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 7.6
46gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.6
47gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 7.6
48gb|AC154418.2| Mus musculus BAC clone RP24-209I7 from chromosome... 40 7.6 
>gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence
          Length = 152439

 Score =  135 bits (68), Expect = 2e-28
 Identities = 155/184 (84%)
 Strand = Plus / Minus

                                                                          
Query: 17     ccgctgctggtgctccacggcgccgacgacatggtgaccgacccggaggggtcgcggcgg 76
              |||||||||||| | ||||||||||||||| |||||||||||||  |||| ||||||  |
Sbjct: 108732 ccgctgctggtgatgcacggcgccgacgacctggtgaccgaccccaagggctcgcgggcg 108673

                                                                          
Query: 77     ctgcaccgggaggcctccaccccggacaaggccatccggctctacgacggcctgctgcac 136
              ||| ||  | |||||||| || |||||||| || ||  |||||||||||| |||||||||
Sbjct: 108672 ctgtacgagcaggcctcctccgcggacaagtccctcaagctctacgacgggctgctgcac 108613

                                                                          
Query: 137    gacctcctcatcgagcccgagaaggaggcggtgctgggcgacatcgtcgactggctgcgc 196
              |||||||| |||||||||||||||||   |||| ||| ||||||||| |  |||||| ||
Sbjct: 108612 gacctcctgatcgagcccgagaaggacaaggtgatggacgacatcgtggcgtggctgagc 108553

                  
Query: 197    ccca 200
              ||||
Sbjct: 108552 ccca 108549
to top
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                               
Query: 16      gccgctgctggtgctccacggcgccgacgaca 47
               |||||||||||||||| |||| ||||||||||
Sbjct: 3475573 gccgctgctggtgctcaacggtgccgacgaca 3475542
to top
>gb|AE009409.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 179 of
            187 of the complete sequence
          Length = 12457

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 164  gcggtgctgggcgacatcgtcga 186
            |||||||||||||||||||||||
Sbjct: 5958 gcggtgctgggcgacatcgtcga 5936
to top
>gb|AE008205.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 9 of
            187 of the complete sequence
          Length = 12850

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 164  gcggtgctgggcgacatcgtcga 186
            |||||||||||||||||||||||
Sbjct: 3714 gcggtgctgggcgacatcgtcga 3736
to top
>gb|AY325563.1| Uncultured bacterium clone GA54 putative dissimilatory
           membrane-bound nitrate reductase (narG) gene, partial
           cds
          Length = 653

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 216 cgcgccggccggtccgtgggatg 238
           |||||||||||||||||||||||
Sbjct: 168 cgcgccggccggtccgtgggatg 190
to top
>gb|AE012358.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 266
            of 460 of the complete genome
          Length = 11304

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 120  acgacggcctgctgcacgacctc 142
            |||||||||||||||||||||||
Sbjct: 3763 acgacggcctgctgcacgacctc 3741
to top
>gb|DQ010708.1| Unidentified bacterium clone 19g65 membrane bound nitrate reductase
           (narG) gene, partial cds
          Length = 653

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 216 cgcgccggccggtccgtgggatg 238
           |||||||||||||||||||||||
Sbjct: 168 cgcgccggccggtccgtgggatg 190
to top
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 120     acgacggcctgctgcacgacctc 142
               |||||||||||||||||||||||
Sbjct: 1980049 acgacggcctgctgcacgacctc 1980071



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 16      gccgctgctggtgctccacggcgccgacgaca 47
               |||| ||||||||||| |||||||||| ||||
Sbjct: 1663014 gccggtgctggtgctcaacggcgccgatgaca 1663045
to top
>gb|AY955184.1| Uncultured bacterium clone GRAMJ4 putative dissimilatory
           membrane-bound nitrate reductase (narG) gene, partial
           cds
          Length = 653

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 216 cgcgccggccggtccgtgggatg 238
           |||||||||||||||||||||||
Sbjct: 168 cgcgccggccggtccgtgggatg 190
to top
>gb|DQ233276.1| Uncultured bacterium clone 3_21 dissimilatory nitrate-reductase
           (narG) gene, partial cds
          Length = 653

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 217 gcgccggccggtccgtgggatg 238
           ||||||||||||||||||||||
Sbjct: 169 gcgccggccggtccgtgggatg 190
to top
>gb|AY453381.1| Uncultured bacterium clone F89 dissimilatory membrane-bound nitrate
           reductase (narG) gene, partial cds
          Length = 655

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 217 gcgccggccggtccgtgggatg 238
           ||||||||||||||||||||||
Sbjct: 169 gcgccggccggtccgtgggatg 190
to top
>gb|DQ481169.1| Uncultured bacterium clone LT-075_12 membrane bound nitrate
           reductase (narG) gene, partial cds
          Length = 654

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 217 gcgccggccggtccgtgggatg 238
           ||||||||||||||||||||||
Sbjct: 169 gcgccggccggtccgtgggatg 190
to top
>gb|AF377946.3| Oryza sativa (japonica cultivar-group) chromosome 3, BAC clone
              OSJNBa0031O09, complete sequence
          Length = 161339

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 143    ctcatcgagcccgagaaggag 163
              |||||||||||||||||||||
Sbjct: 122323 ctcatcgagcccgagaaggag 122303
to top
>gb|AC147426.2| Oryza sativa chromosome 3  B1377B10 genomic sequence, complete sequence
          Length = 184366

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 143   ctcatcgagcccgagaaggag 163
             |||||||||||||||||||||
Sbjct: 40306 ctcatcgagcccgagaaggag 40286
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 143      ctcatcgagcccgagaaggag 163
                |||||||||||||||||||||
Sbjct: 28857011 ctcatcgagcccgagaaggag 28856991
to top
>ref|XM_538685.2| PREDICTED: Canis familiaris similar to Cyclin-dependent kinase 4
          inhibitor A (CDK4I) (p16-INK4) (p16-INK4a) (Multiple
          tumor suppressor 1) (MTS1) (LOC481563), mRNA
          Length = 255

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 19 gctgctggtgctccacggcgccgac 43
          ||||||| |||||||||||||||||
Sbjct: 27 gctgctgctgctccacggcgccgac 51
to top
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 173     ggcgacatcgtcgactggctg 193
               |||||||||||||||||||||
Sbjct: 3183803 ggcgacatcgtcgactggctg 3183783
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 143      ctcatcgagcccgagaaggag 163
                |||||||||||||||||||||
Sbjct: 28948433 ctcatcgagcccgagaaggag 28948413
to top
>ref|NM_214098.1| Sus scrofa interleukin-18 receptor alpha chain (IL-18RA), mRNA
          Length = 1620

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 486  gacagagatttctctgctttc 506
            |||||||||||||||||||||
Sbjct: 1514 gacagagatttctctgctttc 1494
to top
>dbj|AK120822.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019A20, full
            insert sequence
          Length = 1702

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 143  ctcatcgagcccgagaaggag 163
            |||||||||||||||||||||
Sbjct: 1188 ctcatcgagcccgagaaggag 1208
to top
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 162    aggcggtgctgggcgacatcgtcgactgg 190
              |||||| |||||||| |||||||||||||
Sbjct: 304384 aggcggcgctgggcgtcatcgtcgactgg 304356
to top
>dbj|AB079258.1| Sus scrofa IL-18Ra mRNA for interleukin-18 receptor alpha chain,
            complete cds
          Length = 1620

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 486  gacagagatttctctgctttc 506
            |||||||||||||||||||||
Sbjct: 1514 gacagagatttctctgctttc 1494
to top
>ref|NM_197234.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBb0073N24.18), mRNA
          Length = 414

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 31  ccacggcgccgacgacatgg 50
           ||||||||||||||||||||
Sbjct: 367 ccacggcgccgacgacatgg 348
to top
>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0062C05 map S21174S, complete sequence
          Length = 178867

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    ccacggcgccgacgacatgg 50
             ||||||||||||||||||||
Sbjct: 33972 ccacggcgccgacgacatgg 33953
to top
>gb|AE009008.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 34 of
            256 of the complete sequence
          Length = 11218

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 123  acggcctgctgcacgacctc 142
            ||||||||||||||||||||
Sbjct: 7879 acggcctgctgcacgacctc 7860
to top
>gb|DQ481148.1| Uncultured bacterium clone LT-600_05 membrane bound nitrate
           reductase (narG) gene, partial cds
          Length = 651

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 217 gcgccggccggtccgtggga 236
           ||||||||||||||||||||
Sbjct: 169 gcgccggccggtccgtggga 188
to top
>emb|CR732210.2|CNS0GRX3 Tetraodon nigroviridis full-length cDNA
          Length = 1312

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 25  ggtgctccacggcgccgacg 44
           ||||||||||||||||||||
Sbjct: 468 ggtgctccacggcgccgacg 487
to top
>emb|CR650047.2|CNS0F0JP Tetraodon nigroviridis full-length cDNA
          Length = 1236

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 25  ggtgctccacggcgccgacg 44
           ||||||||||||||||||||
Sbjct: 571 ggtgctccacggcgccgacg 590
to top
>emb|CR639895.2|CNS0ESPP Tetraodon nigroviridis full-length cDNA
          Length = 1265

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 25  ggtgctccacggcgccgacg 44
           ||||||||||||||||||||
Sbjct: 434 ggtgctccacggcgccgacg 453
to top
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 12     cggtgccgctgctggtgctc 31
              ||||||||||||||||||||
Sbjct: 562131 cggtgccgctgctggtgctc 562112
to top
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    aggcggtgctgggcgacatc 181
              ||||||||||||||||||||
Sbjct: 240609 aggcggtgctgggcgacatc 240628
to top
>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete
             sequence
          Length = 130058

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    ccacggcgccgacgacatgg 50
             ||||||||||||||||||||
Sbjct: 99830 ccacggcgccgacgacatgg 99811
to top
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    ctggtgctccacggcgccgacgac 46
             |||||||||||||||| |||||||
Sbjct: 63193 ctggtgctccacggcgacgacgac 63170
to top
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 16      gccgctgctggtgctccacggcgccgacgaca 47
               |||| ||||||||||| |||| ||||||||||
Sbjct: 1442845 gccgttgctggtgctcaacggtgccgacgaca 1442876
to top
>gb|AE011933.1| Xanthomonas axonopodis pv. citri str. 306,  section 311 of 469 of the
            complete genome
          Length = 11242

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 20   ctgctggtgctccacggcgccgacgaca 47
            |||||||||||| |||| ||||||||||
Sbjct: 2354 ctgctggtgctcaacggtgccgacgaca 2327
to top
>gb|AE012387.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 295
           of 460 of the complete genome
          Length = 9939

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 16  gccgctgctggtgctccacggcgccgacgaca 47
           |||| ||||||||||| |||||||||| ||||
Sbjct: 363 gccggtgctggtgctcaacggcgccgatgaca 332
to top
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    acggcctgctgcacgacctc 142
              ||||||||||||||||||||
Sbjct: 368438 acggcctgctgcacgacctc 368419
to top
>gb|DP000053.1| Oryctolagus cuniculus target 126 genomic scaffold
          Length = 470930

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 19     gctgctggtgctccacggcgccga 42
              ||||||| ||||||||||||||||
Sbjct: 299273 gctgctgctgctccacggcgccga 299250



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 19     gctgctggtgctccacggcgccga 42
              ||||||| ||||||||||||||||
Sbjct: 259591 gctgctgctgctccacggcgccga 259568
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 31       ccacggcgccgacgacatgg 50
                ||||||||||||||||||||
Sbjct: 18738552 ccacggcgccgacgacatgg 18738533
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 384     cggcggaggaggctgctgcg 403
               ||||||||||||||||||||
Sbjct: 2633855 cggcggaggaggctgctgcg 2633874
to top
>dbj|AP005741.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0470H09
          Length = 141257

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 384   cggcggaggaggctgctgcg 403
             ||||||||||||||||||||
Sbjct: 12136 cggcggaggaggctgctgcg 12155
to top
>gb|AF191325.1|AF191325 Mus musculus SRY-related protein SOX 8 (Sox8) gene, partial cds
          Length = 4519

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 280 cgggagaaacctcccctctccgac 303
           |||||||||| |||||||||||||
Sbjct: 302 cgggagaaacgtcccctctccgac 325
to top
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 11      acggtgccgctgctggtgct 30
               ||||||||||||||||||||
Sbjct: 3582487 acggtgccgctgctggtgct 3582506
to top
>dbj|AK060316.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-E04, full
           insert sequence
          Length = 1361

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 384 cggcggaggaggctgctgcg 403
           ||||||||||||||||||||
Sbjct: 233 cggcggaggaggctgctgcg 252
to top
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 16      gccgctgctggtgctccacggcgccgacgaca 47
               |||| ||||||||||| |||| ||||||||||
Sbjct: 1467339 gccgttgctggtgctcaacggtgccgacgaca 1467370
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 31       ccacggcgccgacgacatgg 50
                ||||||||||||||||||||
Sbjct: 18749405 ccacggcgccgacgacatgg 18749386
to top
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 163     ggcggtgctgggcgacatcgtcga 186
               |||||||||| |||||||||||||
Sbjct: 1107031 ggcggtgctgagcgacatcgtcga 1107054
to top
>gb|AC154418.2| Mus musculus BAC clone RP24-209I7 from chromosome 17, complete sequence
          Length = 195475

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 280    cgggagaaacctcccctctccgac 303
              |||||||||| |||||||||||||
Sbjct: 124312 cgggagaaacgtcccctctccgac 124289


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,847,928
Number of Sequences: 3902068
Number of extensions: 3847928
Number of successful extensions: 74384
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73151
Number of HSP's gapped (non-prelim): 1233
length of query: 560
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 537
effective length of database: 17,143,297,704
effective search space: 9205950867048
effective search space used: 9205950867048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top