ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd23n05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY033628.1| Hordeum vulgare subsp. vulgare horcolin mRNA, com... 1156 0.0
2gb|AY770690.1| Hordeum vulgare horcolin gene, complete cds 743 0.0
3gb|DQ016627.1| Agrostis stolonifera Crs-1 mRNA, complete cds 44 0.59
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 2.3
5gb|AC084022.10| Oryza sativa chromosome 3 BAC OSJNBa0011H24 geno... 42 2.3
6gb|AC116585.3| Mus musculus BAC clone RP23-358A16 from chromosom... 42 2.3
7gb|BC040994.1| Homo sapiens cDNA clone IMAGE:5272574 42 2.3
8gb|AC007437.16| Homo sapiens 12q22 BAC RPCI11-541G9 (Roswell Par... 42 2.3
9gb|AC007656.2| Homo sapiens 12q22 BAC RPCI11-534P6 (Rowswell Par... 42 2.3
10gb|AC013604.9|AC013604 Homo sapiens, clone RP11-10E14, complete ... 42 2.3
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
12emb|BX001055.11| Zebrafish DNA sequence from clone CH211-87M5 in... 42 2.3
13gb|AC122883.5| Mus musculus BAC clone RP23-83N21 from chromosome... 42 2.3
14emb|AL627098.30| Mouse DNA sequence from clone RP23-108K17 on ch... 42 2.3
15gb|AC132258.3| Mus musculus BAC clone RP24-361F13 from 1, comple... 42 2.3
16gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 9.2
17gb|AC105981.10| Mus musculus chromosome 8, clone RP24-210I22, co... 40 9.2
18gb|AC167021.3| Mus musculus BAC clone RP23-152D8 from chromosome... 40 9.2
19ref|XM_472139.1| Oryza sativa (japonica cultivar-group), predic... 40 9.2
20gb|AC107702.12| Mus musculus chromosome 3, clone RP23-391G19, co... 40 9.2
21gb|AC115933.7| Mus musculus chromosome 3, clone RP24-539I8, comp... 40 9.2
22gb|AC117994.12| Mus musculus chromosome 6, clone RP23-25K2, comp... 40 9.2
23gb|AC120984.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.2
24gb|AC110168.11| Mus musculus chromosome 17, clone RP23-312F5, co... 40 9.2
25gb|AC155298.2| Mus musculus BAC clone RP24-245L7 from chromosome... 40 9.2
26gb|AC107834.13| Mus musculus chromosome 1, clone RP23-251L12, co... 40 9.2
27gb|AC115954.11| Mus musculus chromosome 16, clone RP24-62P21, co... 40 9.2
28gb|AC132429.2| Mus musculus BAC clone RP23-203O20 from chromosom... 40 9.2
29gb|AC120884.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.2
30gb|AC002550.1|HUAC002550 Human Chromosome 16 BAC clone CIT987SK-... 40 9.2
31gb|AC122467.3| Mus musculus BAC clone RP24-311K2 from chromosome... 40 9.2
32gb|AC117242.3| Mus musculus BAC clone RP24-151P1 from chromosome... 40 9.2
33gb|AC114915.3| Mus musculus BAC clone RP23-54K21 from 2, complet... 40 9.2
34gb|AC122879.3| Mus musculus BAC clone RP23-76C10 from 1, complet... 40 9.2
35gb|AC114009.4| Mus musculus BAC clone RP23-385K2 from 8, complet... 40 9.2
36gb|AC107670.10| Mus musculus chromosome 14, clone RP23-54K15, co... 40 9.2
37gb|AC116484.12| Mus musculus chromosome 16, clone RP23-425F12, c... 40 9.2
38emb|AL645730.10| Human DNA sequence from clone RP11-93G23 on chr... 40 9.2
39emb|AL512430.14| Human DNA sequence from clone RP11-346C16 on ch... 40 9.2
40emb|AL356953.17| Human DNA sequence from clone RP11-572A16 on ch... 40 9.2
41emb|AL049692.13|HSDJ74J1 Human DNA sequence from clone RP1-74J1 ... 40 9.2
42emb|AL731632.2|OSJN00275 Oryza sativa genomic DNA, chromosome 4,... 40 9.2
43gb|AC153013.3| Mus musculus BAC clone RP23-273N8 from chromosome... 40 9.2
44emb|BX547992.4| Zebrafish DNA sequence from clone DKEY-225I9 in ... 40 9.2
45dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
46dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
47gb|AC156397.5| Mus musculus 6 BAC RP24-279P24 (Roswell Park Canc... 40 9.2
48gb|AY245105.1| Homo sapiens Wilms tumor 1 (WT1) gene, complete cds 40 9.2
49gb|AC127287.4| Mus musculus BAC clone RP23-345G7 from chromosome... 40 9.2
50emb|AL606494.4| Mouse DNA sequence from clone RP23-198B6 on chro... 40 9.2
51emb|AL772281.7| Mouse DNA sequence from clone RP23-138O20 on chr... 40 9.2
52gb|AC002464.1|AC002464 Human BAC clone CTA-331P3, complete sequence 40 9.2
53gb|AC127305.5| Mus musculus BAC clone RP23-289H23 from 3, comple... 40 9.2
54emb|CR936503.1| Lactobacillus sakei strain 23K complete genome 40 9.2
55gb|AC100746.4| Mus musculus chromosome 5, clone RP24-399G21, com... 40 9.2
56gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.2
57emb|AL731587.2|OSJN00230 Oryza sativa genomic DNA, chromosome 4,... 40 9.2
58gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete ge... 40 9.2
59dbj|AP006418.1| Lotus japonicus genomic DNA, chromosome 6, clone... 40 9.2
60emb|AL844844.8| Mouse DNA sequence from clone RP23-103D7 on chro... 40 9.2
61gb|AC155239.2| Mus musculus BAC clone RP24-462F23 from chromosom... 40 9.2
62gb|AC163216.10| Mus musculus chromosome 1, clone RP23-69G5, comp... 40 9.2 
>gb|AY033628.1| Hordeum vulgare subsp. vulgare horcolin mRNA, complete cds
          Length = 665

 Score = 1156 bits (583), Expect = 0.0
 Identities = 589/591 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgagcaagcctgtgaagattgggccatggggtgggaatggtggcagcgagcgtgatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  aatgagcaagcctgtgaagattgggccatggggtgggaatggtggcagcgagcgtgatgt 134

                                                                       
Query: 61  ccagccaaagcccatccgtatggttagtatgaccgtcagtagcggagctatcgttgacgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ccagccaaagcccatccgtatggttagtatgaccgtcagtagcggagctatcgttgacgc 194

                                                                       
Query: 121 tattgcattcacctatgtgggcaccgataacgttcaacactcttccggcatcaagtgggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tattgcattcacctatgtgggcaccgataacgttcaacactcttccggcatcaagtgggg 254

                                                                       
Query: 181 tggcactggcggcacagaagatacgattaatctagacgctacgaactacgtgaccgaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tggcactggcggcacagaagatacgattaatctagacgctacgaactacgtgaccgaaat 314

                                                                       
Query: 241 ctccgggacagtgggtaaatttgggaccgacgacatcgtcacgtctcttaaaattatcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ctccgggacagtgggtaaatttgggaccgacgacatcgtcacgtctcttaaaattatcac 374

                                                                       
Query: 301 ctccaagggggttaccaggacatacggctcaggtaccggaattccattccgcgtcccggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ctccaagggggttaccaggacatacggctcaggtaccggaattccattccgcgtcccggt 434

                                                                       
Query: 361 gcttgacgggggtaagatcgccggcttctttggacgggctggtgctttcctggacgcgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gcttgacgggggtaagatcgccggcttctttggacgggctggtgctttcctggacgcgat 494

                                                                       
Query: 421 tgggttctacattactccatgaatggttggttgatatcggccggccacctctcctctgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgggttctacattactccatgaatggttggttgatatcggccggccacctctcctctgga 554

                                                                       
Query: 481 ggaaggaggtggcgtagtactaccggcagcgtctgcttgctagaataaataaacttgtga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ggaaggaggtggcgtagtactaccggcagcgtctgcttgctagaataaataaacttgtga 614

                                                              
Query: 541 agtgccttacatggcactttagcatatgtgtgtgattatgtgtgacgctgc 591
           |||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 615 agtgccttacatggcactttagcatatgtgtgggataatgtgtgacgctgc 665
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>gb|AY770690.1| Hordeum vulgare horcolin gene, complete cds
          Length = 1338

 Score =  743 bits (375), Expect = 0.0
 Identities = 384/387 (99%)
 Strand = Plus / Plus

                                                                        
Query: 205  gattaatctagacgctacgaactacgtgaccgaaatctccgggacagtgggtaaatttgg 264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952  gattaatctagacgctacgaactacgtgaccgaaatctccgggacagtgggtaaatttgg 1011

                                                                        
Query: 265  gaccgacgacatcgtcacgtctcttaaaattatcacctccaagggggttaccaggacata 324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 gaccgacgacatcgtcacgtctcttaaaattatcacctccaagggggttaccaggacata 1071

                                                                        
Query: 325  cggctcaggtaccggaattccattccgcgtcccggtgcttgacgggggtaagatcgccgg 384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1072 cggctcaggtaccggaattccattccgcgtcccggtgcttgacgggggtaagatcgccgg 1131

                                                                        
Query: 385  cttctttggacgggctggtgctttcctggacgcgattgggttctacattactccatgaat 444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1132 cttctttggacgggctggtgctttcctggacgcgattgggttctacattactccatgaat 1191

                                                                        
Query: 445  ggttggttgatatcggccggccacctctcctctggaggaaggaggtggcgtagtactacc 504
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1192 ggttggttgatatcggccggccacctctcctctggaagaaggaggtggcgtagtactacc 1251

                                                                        
Query: 505  ggcagcgtctgcttgctagaataaataaacttgtgaagtgccttacatggcactttagca 564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1252 ggcagcgtctgcttgctagaataaataaacttgtgaagtgccttacatggcactttagca 1311

                                       
Query: 565  tatgtgtgtgattatgtgtgacgctgc 591
            |||||||| ||| ||||||||||||||
Sbjct: 1312 tatgtgtgggataatgtgtgacgctgc 1338



 Score =  400 bits (202), Expect = e-108
 Identities = 202/202 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   gagcaagcctgtgaagattgggccatggggtgggaatggtggcagcgagcgtgatgtcca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gagcaagcctgtgaagattgggccatggggtgggaatggtggcagcgagcgtgatgtcca 642

                                                                       
Query: 64  gccaaagcccatccgtatggttagtatgaccgtcagtagcggagctatcgttgacgctat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gccaaagcccatccgtatggttagtatgaccgtcagtagcggagctatcgttgacgctat 702

                                                                       
Query: 124 tgcattcacctatgtgggcaccgataacgttcaacactcttccggcatcaagtggggtgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tgcattcacctatgtgggcaccgataacgttcaacactcttccggcatcaagtggggtgg 762

                                 
Query: 184 cactggcggcacagaagatacg 205
           ||||||||||||||||||||||
Sbjct: 763 cactggcggcacagaagatacg 784
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>gb|DQ016627.1| Agrostis stolonifera Crs-1 mRNA, complete cds
          Length = 1283

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 21  ttgggccatggggtgggaatgg 42
           ||||||||||||||||||||||
Sbjct: 578 ttgggccatggggtgggaatgg 599
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 458      cggccggccacctctcctctg 478
                |||||||||||||||||||||
Sbjct: 14967011 cggccggccacctctcctctg 14966991
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>gb|AC084022.10| Oryza sativa chromosome 3 BAC OSJNBa0011H24 genomic sequence, complete
             sequence
          Length = 137184

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 458   cggccggccacctctcctctg 478
             |||||||||||||||||||||
Sbjct: 75751 cggccggccacctctcctctg 75771
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>gb|AC116585.3| Mus musculus BAC clone RP23-358A16 from chromosome 3, complete sequence
          Length = 227492

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 462   cggccacctctcctctggagg 482
             |||||||||||||||||||||
Sbjct: 75473 cggccacctctcctctggagg 75453
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>gb|BC040994.1| Homo sapiens cDNA clone IMAGE:5272574
          Length = 4564

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 468  cctctcctctggaggaaggag 488
            |||||||||||||||||||||
Sbjct: 3973 cctctcctctggaggaaggag 3953
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>gb|AC007437.16| Homo sapiens 12q22 BAC RPCI11-541G9 (Roswell Park Cancer Institute
            Human BAC Library) complete sequence
          Length = 179854

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 468  cctctcctctggaggaaggag 488
            |||||||||||||||||||||
Sbjct: 3216 cctctcctctggaggaaggag 3236
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>gb|AC007656.2| Homo sapiens 12q22 BAC RPCI11-534P6 (Rowswell Park Cancer Institute Human
              BAC Library) complete sequence
          Length = 171236

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 468    cctctcctctggaggaaggag 488
              |||||||||||||||||||||
Sbjct: 147830 cctctcctctggaggaaggag 147850
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>gb|AC013604.9|AC013604 Homo sapiens, clone RP11-10E14, complete sequence
          Length = 167236

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 563   catatgtgtgtgattatgtgt 583
             |||||||||||||||||||||
Sbjct: 70683 catatgtgtgtgattatgtgt 70663
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 458      cggccggccacctctcctctg 478
                |||||||||||||||||||||
Sbjct: 14961545 cggccggccacctctcctctg 14961525
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>emb|BX001055.11| Zebrafish DNA sequence from clone CH211-87M5 in linkage group 9, complete
              sequence
          Length = 194418

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 564    atatgtgtgtgattatgtgtg 584
              |||||||||||||||||||||
Sbjct: 182016 atatgtgtgtgattatgtgtg 182036
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>gb|AC122883.5| Mus musculus BAC clone RP23-83N21 from chromosome 3, complete sequence
          Length = 230573

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 459    ggccggccacctctcctctgg 479
              |||||||||||||||||||||
Sbjct: 137343 ggccggccacctctcctctgg 137323
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>emb|AL627098.30| Mouse DNA sequence from clone RP23-108K17 on chromosome 4, complete
              sequence
          Length = 208131

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 564    atatgtgtgtgattatgtgtg 584
              |||||||||||||||||||||
Sbjct: 102197 atatgtgtgtgattatgtgtg 102177
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>gb|AC132258.3| Mus musculus BAC clone RP24-361F13 from 1, complete sequence
          Length = 130493

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 565   tatgtgtgtgattatgtgtga 585
             |||||||||||||||||||||
Sbjct: 66821 tatgtgtgtgattatgtgtga 66801
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 391     tggacgggctggtgctttcc 410
               ||||||||||||||||||||
Sbjct: 2644122 tggacgggctggtgctttcc 2644141
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>gb|AC105981.10| Mus musculus chromosome 8, clone RP24-210I22, complete sequence
          Length = 167656

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 619    agtgtgtgtggatcatatgt 638
              ||||||||||||||||||||
Sbjct: 129612 agtgtgtgtggatcatatgt 129631
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>gb|AC167021.3| Mus musculus BAC clone RP23-152D8 from chromosome 6, complete sequence
          Length = 222021

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 565    tatgtgtgtgattatgtgtg 584
              ||||||||||||||||||||
Sbjct: 187777 tatgtgtgtgattatgtgtg 187758
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>ref|XM_472139.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1434

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 16  gaagattgggccatggggtgggaa 39
           ||||||||||||||||||| ||||
Sbjct: 501 gaagattgggccatggggttggaa 524
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>gb|AC107702.12| Mus musculus chromosome 3, clone RP23-391G19, complete sequence
          Length = 219296

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 463    ggccacctctcctctggagg 482
              ||||||||||||||||||||
Sbjct: 142394 ggccacctctcctctggagg 142375
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>gb|AC115933.7| Mus musculus chromosome 3, clone RP24-539I8, complete sequence
          Length = 187920

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 565   tatgtgtgtgattatgtgtg 584
             ||||||||||||||||||||
Sbjct: 87572 tatgtgtgtgattatgtgtg 87591
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>gb|AC117994.12| Mus musculus chromosome 6, clone RP23-25K2, complete sequence
          Length = 237945

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 34     tgggaatggtggcagcgagc 53
              ||||||||||||||||||||
Sbjct: 235116 tgggaatggtggcagcgagc 235135
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>gb|AC120984.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0026G02, complete sequence
          Length = 123472

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 7     caagcctgtgaagattgggccatggggtgggaatgg 42
             ||||| ||| ||||||||||| |||||||| |||||
Sbjct: 16430 caagcttgtcaagattgggccctggggtggaaatgg 16395
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>gb|AC110168.11| Mus musculus chromosome 17, clone RP23-312F5, complete sequence
          Length = 177747

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 565   tatgtgtgtgattatgtgtg 584
             ||||||||||||||||||||
Sbjct: 41449 tatgtgtgtgattatgtgtg 41430
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>gb|AC155298.2| Mus musculus BAC clone RP24-245L7 from chromosome 13, complete sequence
          Length = 178609

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 565   tatgtgtgtgattatgtgtg 584
             ||||||||||||||||||||
Sbjct: 12918 tatgtgtgtgattatgtgtg 12899
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>gb|AC107834.13| Mus musculus chromosome 1, clone RP23-251L12, complete sequence
          Length = 180525

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 463    ggccacctctcctctggagg 482
              ||||||||||||||||||||
Sbjct: 101559 ggccacctctcctctggagg 101578
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>gb|AC115954.11| Mus musculus chromosome 16, clone RP24-62P21, complete sequence
          Length = 205819

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 565   tatgtgtgtgattatgtgtg 584
             ||||||||||||||||||||
Sbjct: 47957 tatgtgtgtgattatgtgtg 47976
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>gb|AC132429.2| Mus musculus BAC clone RP23-203O20 from chromosome 1, complete sequence
          Length = 199083

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 463    ggccacctctcctctggagg 482
              ||||||||||||||||||||
Sbjct: 112610 ggccacctctcctctggagg 112629
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>gb|AC120884.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0017D19, complete sequence
          Length = 142015

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 7     caagcctgtgaagattgggccatggggtgggaatgg 42
             ||||| ||| ||||||||||| |||||||| |||||
Sbjct: 86416 caagcttgtcaagattgggccctggggtggaaatgg 86381
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>gb|AC002550.1|HUAC002550 Human Chromosome 16 BAC clone CIT987SK-A-101F10, complete sequence
          Length = 86156

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 474   ctctggaggaaggaggtggc 493
             ||||||||||||||||||||
Sbjct: 60009 ctctggaggaaggaggtggc 59990
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>gb|AC122467.3| Mus musculus BAC clone RP24-311K2 from chromosome 6, complete sequence
          Length = 110480

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 565   tatgtgtgtgattatgtgtg 584
             ||||||||||||||||||||
Sbjct: 85953 tatgtgtgtgattatgtgtg 85934
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>gb|AC117242.3| Mus musculus BAC clone RP24-151P1 from chromosome 6, complete
            sequence
          Length = 209736

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 473  cctctggaggaaggaggtgg 492
            ||||||||||||||||||||
Sbjct: 9726 cctctggaggaaggaggtgg 9745
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>gb|AC114915.3| Mus musculus BAC clone RP23-54K21 from 2, complete sequence
          Length = 257013

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 463   ggccacctctcctctggagg 482
             ||||||||||||||||||||
Sbjct: 28046 ggccacctctcctctggagg 28027
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>gb|AC122879.3| Mus musculus BAC clone RP23-76C10 from 1, complete sequence
          Length = 250884

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 463   ggccacctctcctctggagg 482
             ||||||||||||||||||||
Sbjct: 51459 ggccacctctcctctggagg 51440
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>gb|AC114009.4| Mus musculus BAC clone RP23-385K2 from 8, complete sequence
          Length = 202089

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 555   cactttagcatatgtgtgtgatta 578
             ||||| ||||||||||||||||||
Sbjct: 59397 cacttcagcatatgtgtgtgatta 59374
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>gb|AC107670.10| Mus musculus chromosome 14, clone RP23-54K15, complete sequence
          Length = 202048

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 561   agcatatgtgtgtgattatgtgtg 584
             ||||||||||||||| ||||||||
Sbjct: 54487 agcatatgtgtgtgagtatgtgtg 54510
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>gb|AC116484.12| Mus musculus chromosome 16, clone RP23-425F12, complete sequence
          Length = 206793

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 565    tatgtgtgtgattatgtgtg 584
              ||||||||||||||||||||
Sbjct: 190934 tatgtgtgtgattatgtgtg 190953
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>emb|AL645730.10| Human DNA sequence from clone RP11-93G23 on chromosome 1 Contains the
             5' end of a the gene for a novel protein and a pseudogene
             similar to part of NADH dehydrogenase 2 (MTND2), complete
             sequence
          Length = 153702

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 468   cctctcctctggaggaagga 487
             ||||||||||||||||||||
Sbjct: 64893 cctctcctctggaggaagga 64874
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>emb|AL512430.14| Human DNA sequence from clone RP11-346C16 on chromosome 6 Contains the
             3' part of gene KIAA1028, a pseudogene similar to
             ribosomal protein S19 (RPS19), a pseudogene similar to
             protein phosphatases, a ribosomal protein S20 (RPS20)
             pseudogene and a CpG island, complete sequence
          Length = 189098

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 566   atgtgtgtgattatgtgtga 585
             ||||||||||||||||||||
Sbjct: 13205 atgtgtgtgattatgtgtga 13186
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>emb|AL356953.17| Human DNA sequence from clone RP11-572A16 on chromosome 1 Contains the
             3' end of a pseudogene similar to Mus musculus protein
             tyrosine phosphatase receptor type V Ptprv, the LGR6 gene
             for leucine-rich repeat-containing G protein-coupled
             receptor 6, the gene for a ubiquitin conjugating enzyme,
             the 5' end of the PPP1R12B gene for protein phosphatase 1
             regulatory (inhibitor) subunit 12B and four CpG islands,
             complete sequence
          Length = 177344

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 472   tcctctggaggaaggaggtg 491
             ||||||||||||||||||||
Sbjct: 25132 tcctctggaggaaggaggtg 25151
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>emb|AL049692.13|HSDJ74J1 Human DNA sequence from clone RP1-74J1 on chromosome 11p13 Contains a
             gene for Wilms' tumor associated protein, the WT1 (Wilms
             tumor 1) gene, ESTs, STSs, GSSs and CpG Islands, complete
             sequence
          Length = 127580

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 519   gctagaataaataaacttgt 538
             ||||||||||||||||||||
Sbjct: 78661 gctagaataaataaacttgt 78642
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>emb|AL731632.2|OSJN00275 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0042I07,
             complete sequence
          Length = 129198

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 16    gaagattgggccatggggtgggaa 39
             ||||||||||||||||||| ||||
Sbjct: 37771 gaagattgggccatggggttggaa 37794
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>gb|AC153013.3| Mus musculus BAC clone RP23-273N8 from chromosome 8, complete sequence
          Length = 196609

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 555    cactttagcatatgtgtgtgatta 578
              ||||| ||||||||||||||||||
Sbjct: 172840 cacttcagcatatgtgtgtgatta 172817
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>emb|BX547992.4| Zebrafish DNA sequence from clone DKEY-225I9 in linkage group 3, complete
              sequence
          Length = 181320

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 247    gacagtgggtaaatttggga 266
              ||||||||||||||||||||
Sbjct: 143579 gacagtgggtaaatttggga 143598
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 16       gaagattgggccatggggtgggaa 39
                ||||||||||||||||||| ||||
Sbjct: 17947492 gaagattgggccatggggttggaa 17947515
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 7        caagcctgtgaagattgggccatggggtgggaatgg 42
                ||||| ||| ||||||||||| |||||||| |||||
Sbjct: 22655630 caagcttgtcaagattgggccctggggtggaaatgg 22655595
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>gb|AC156397.5| Mus musculus 6 BAC RP24-279P24 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 166910

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    tgggaatggtggcagcgagc 53
             ||||||||||||||||||||
Sbjct: 51513 tgggaatggtggcagcgagc 51532
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>gb|AY245105.1| Homo sapiens Wilms tumor 1 (WT1) gene, complete cds
          Length = 50678

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 519   gctagaataaataaacttgt 538
             ||||||||||||||||||||
Sbjct: 26652 gctagaataaataaacttgt 26633
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>gb|AC127287.4| Mus musculus BAC clone RP23-345G7 from chromosome 7, complete sequence
          Length = 209901

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 557    ctttagcatatgtgtgtgattatgtgtg 584
              |||||||||||||||||| || ||||||
Sbjct: 154860 ctttagcatatgtgtgtgtttgtgtgtg 154833
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>emb|AL606494.4| Mouse DNA sequence from clone RP23-198B6 on chromosome 2, complete
              sequence
          Length = 196744

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 524    aataaataaacttgtgaagt 543
              ||||||||||||||||||||
Sbjct: 122965 aataaataaacttgtgaagt 122984
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>emb|AL772281.7| Mouse DNA sequence from clone RP23-138O20 on chromosome 4, complete
             sequence
          Length = 58409

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 462   cggccacctctcctctggag 481
             ||||||||||||||||||||
Sbjct: 50224 cggccacctctcctctggag 50243
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>gb|AC002464.1|AC002464 Human BAC clone CTA-331P3, complete sequence
          Length = 123805

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 566   atgtgtgtgattatgtgtga 585
             ||||||||||||||||||||
Sbjct: 29291 atgtgtgtgattatgtgtga 29310
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>gb|AC127305.5| Mus musculus BAC clone RP23-289H23 from 3, complete sequence
          Length = 211760

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 463   ggccacctctcctctggagg 482
             ||||||||||||||||||||
Sbjct: 92191 ggccacctctcctctggagg 92172
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>emb|CR936503.1| Lactobacillus sakei strain 23K complete genome
          Length = 1884661

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 128    ttcacctatgtgggcaccgataac 151
              |||||||| |||||||||||||||
Sbjct: 951414 ttcacctaagtgggcaccgataac 951391
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>gb|AC100746.4| Mus musculus chromosome 5, clone RP24-399G21, complete sequence
          Length = 157682

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 562   gcatatgtgtgtgattatgt 581
             ||||||||||||||||||||
Sbjct: 90397 gcatatgtgtgtgattatgt 90416
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 7        caagcctgtgaagattgggccatggggtgggaatgg 42
                ||||| ||| ||||||||||| |||||||| |||||
Sbjct: 22965541 caagcttgtcaagattgggccctggggtggaaatgg 22965506
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>emb|AL731587.2|OSJN00230 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0016N04,
              complete sequence
          Length = 164645

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 16     gaagattgggccatggggtgggaa 39
              ||||||||||||||||||| ||||
Sbjct: 144247 gaagattgggccatggggttggaa 144270
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>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome
          Length = 2905187

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 63     agccaaagcccatccgtatggtta 86
              |||||||||| |||||||||||||
Sbjct: 473494 agccaaagccaatccgtatggtta 473517
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>dbj|AP006418.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT23A02, TM0306,
             complete sequence
          Length = 62713

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 565   tatgtgtgtgattatgtgtg 584
             ||||||||||||||||||||
Sbjct: 52286 tatgtgtgtgattatgtgtg 52267
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>emb|AL844844.8| Mouse DNA sequence from clone RP23-103D7 on chromosome 2, complete
             sequence
          Length = 213953

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 463   ggccacctctcctctggagg 482
             ||||||||||||||||||||
Sbjct: 82815 ggccacctctcctctggagg 82834
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>gb|AC155239.2| Mus musculus BAC clone RP24-462F23 from chromosome 14, complete
             sequence
          Length = 170006

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 463   ggccacctctcctctggagg 482
             ||||||||||||||||||||
Sbjct: 44739 ggccacctctcctctggagg 44758
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>gb|AC163216.10| Mus musculus chromosome 1, clone RP23-69G5, complete sequence
          Length = 260188

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 463   ggccacctctcctctggagg 482
             ||||||||||||||||||||
Sbjct: 37752 ggccacctctcctctggagg 37771


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,722,118
Number of Sequences: 3902068
Number of extensions: 4722118
Number of successful extensions: 90917
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90607
Number of HSP's gapped (non-prelim): 310
length of query: 670
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 647
effective length of database: 17,143,297,704
effective search space: 11091713614488
effective search space used: 11091713614488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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