ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd24b08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106109.1| Zea mays PCO077553 mRNA sequence 301 1e-78
2ref|NM_193882.1| Oryza sativa (japonica cultivar-group), predic... 270 5e-69
3dbj|AK069233.1| Oryza sativa (japonica cultivar-group) cDNA clon... 270 5e-69
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 232 1e-57
5dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic D... 232 1e-57
6emb|AJ606020.1| Triticum aestivum partial mRNA for putative cycl... 50 0.009
7emb|BX649621.5| Mouse DNA sequence from clone RP23-173F3 on chro... 50 0.009
8gb|AC105076.25| Mus musculus chromosome 3, clone RP23-258P2, com... 44 0.55
9gb|AC114268.2| Homo sapiens chromosome 19 clone LLNLR-244A1, com... 44 0.55
10emb|CR620068.1| full-length cDNA clone CS0DI056YJ24 of Placenta ... 44 0.55
11gb|AC011471.6|AC011471 Homo sapiens chromosome 19 clone CTC-503J... 44 0.55
12emb|AL161669.5|CNS01RHC Human chromosome 14 DNA sequence BAC R-7... 44 0.55
13gb|BC039309.1| Homo sapiens solute carrier family 6 (neurotransm... 42 2.2
14gb|AC123800.4| Mus musculus BAC clone RP24-343K18 from chromosom... 42 2.2
15gb|AC146680.3| Gasterosteus aculeatus clone CH213-10I3, complete... 42 2.2
16gb|AC136621.2| Homo sapiens chromosome 16 clone RP11-481F24, com... 42 2.2
17gb|AC026802.9| Homo sapiens chromosome 16 clone CTD-2545G24, com... 42 2.2
18emb|AL356782.14| Human DNA sequence from clone RP11-47D15 on chr... 42 2.2
19gb|AC116653.4| Homo sapiens BAC clone RP11-1233B13 from 4, compl... 42 2.2
20gb|AC007602.6| Homo sapiens chromosome 16 clone RP11-2D4, comple... 42 2.2
21emb|CR611590.1| full-length cDNA clone CS0DI021YL14 of Placenta ... 42 2.2
22ref|NM_001043.2| Homo sapiens solute carrier family 6 (neurotran... 42 2.2
23emb|X91119.2|HSNETEX13 Homo sapiens partial SLC6A2 gene for nore... 42 2.2
24gb|AC107634.8| Mus musculus chromosome 5, clone RP23-19G21, comp... 40 8.5
25gb|AC079956.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 8.5
26gb|AC123028.4| Mus musculus BAC clone RP24-553H21 from chromosom... 40 8.5
27ref|XM_948970.1| Theileria annulata strain Ankara hypothetical p... 40 8.5
28gb|AC104906.6| Mus musculus chromosome 10, clone RP24-374K6, com... 40 8.5
29emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome 40 8.5
30gb|AC158799.8| Mus musculus BAC RP24-430K11 (Roswell Park Cance... 40 8.5
31emb|AL731863.7| Mouse DNA sequence from clone RP23-442P4 on chro... 40 8.5
32emb|CR753866.9| Zebrafish DNA sequence from clone DKEYP-110C7 in... 40 8.5
33ref|XM_682834.1| PREDICTED: Danio rerio similar to Protein CGI-3... 40 8.5
34ref|XM_687937.1| PREDICTED: Danio rerio similar to acetyl-Coenzy... 40 8.5
35ref|XM_691916.1| PREDICTED: Danio rerio similar to Protein CGI-3... 40 8.5
36emb|BX510647.10| Zebrafish DNA sequence from clone CH211-87N9 in... 40 8.5
37gb|AC154373.2| Mus musculus BAC clone RP23-79I18 from chromosome... 40 8.5
38gb|AC159468.4| Mus musculus 10 BAC RP23-335A3 (Roswell Park Canc... 40 8.5
39emb|BX901941.5| Mouse DNA sequence from clone RP23-344H22 on chr... 40 8.5
40gb|AC084452.1|AC084452 Caenorhabditis briggsae cosmid CB024D21, ... 40 8.5
41emb|BX649564.3| Mouse DNA sequence from clone RP23-405A18 on chr... 40 8.5
42emb|AL808134.17| Mouse DNA sequence from clone RP23-135E1 on chr... 40 8.5
43gb|AC006840.17|AC006840 Homo sapiens chromosome 4 clone C0422C23... 40 8.5
44dbj|AP002748.4| Homo sapiens genomic DNA, chromosome 11 clone:CT... 40 8.5
45emb|CR405701.20| Zebrafish DNA sequence from clone CH211-45M20 i... 40 8.5
46emb|AL935115.6| Zebrafish DNA sequence from clone CH211-199D18, ... 40 8.5
47emb|AL772278.7| Mouse DNA sequence from clone RP23-416G5 on chro... 40 8.5 
>gb|AY106109.1| Zea mays PCO077553 mRNA sequence
          Length = 1615

 Score =  301 bits (152), Expect = 1e-78
 Identities = 299/348 (85%)
 Strand = Plus / Plus

                                                                       
Query: 49  aaccttgccaatgatagcttgcggacaactctttgtgtacggtttaagagtgaagtagta 108
           ||||||||||||||||||||  |||||||||| ||||| || ||||||||||||||||||
Sbjct: 562 aaccttgccaatgatagcttaaggacaactctgtgtgtgcgatttaagagtgaagtagta 621

                                                                       
Query: 109 gcatgcggagttgtgtatgctgcagctaggaggcaccgggtccccctcccagaagagcct 168
           |||||||||||||||||||||||||||||||| |||||||| ||||| || ||||| |||
Sbjct: 622 gcatgcggagttgtgtatgctgcagctaggagacaccgggttccccttcctgaagatcct 681

                                                                       
Query: 169 ccttggtggacagtctttgatgctgatgaggcagcaattcaggaagtttgcagaattctt 228
           || |||||||| ||||||||||||||||| |||| ||||||||||||||||||  |||||
Sbjct: 682 ccgtggtggactgtctttgatgctgatgaagcaggaattcaggaagtttgcagggttctt 741

                                                                       
Query: 229 gctcacctgcacagcctcccaaaggcacagtatataccagtgtataaagataatgattcc 288
           ||||||||  ||||| | || ||||| || || || ||||| |||||||| || ||||||
Sbjct: 742 gctcacctctacagcttgcccaaggcccaatacattccagtatataaagacaacgattcc 801

                                                                       
Query: 289 ttcagtgttagaagggccttggatacacacgcgtctaaggagagtccagcaagtgctgtt 348
           || | |||||  ||   ||  |||  ||| || || ||||| ||||||||||| ||||||
Sbjct: 802 tttactgttaagagaatctctgatctacaggcttcaaaggaaagtccagcaagggctgtt 861

                                                           
Query: 349 gctagtgataggggtactcctgtaccttcgagttctagccaggagaag 396
           ||||| |||| |||||| |||||||| || ||||||||||||||||||
Sbjct: 862 gctagcgataagggtacccctgtaccctcaagttctagccaggagaag 909
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>ref|NM_193882.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1284

 Score =  270 bits (136), Expect = 5e-69
 Identities = 310/368 (84%)
 Strand = Plus / Plus

                                                                       
Query: 49  aaccttgccaatgatagcttgcggacaactctttgtgtacggtttaagagtgaagtagta 108
           ||||||||||| |||||||||||||||||||| |||||| | || ||||||||||| |||
Sbjct: 526 aaccttgccaacgatagcttgcggacaactctatgtgtaagattcaagagtgaagttgta 585

                                                                       
Query: 109 gcatgcggagttgtgtatgctgcagctaggaggcaccgggtccccctcccagaagagcct 168
           ||||| |||||||||||||||||||| ||||||||  | || |||||||| ||||| |||
Sbjct: 586 gcatgtggagttgtgtatgctgcagcaaggaggcatggcgtgcccctccctgaagatcct 645

                                                                       
Query: 169 ccttggtggacagtctttgatgctgatgaggcagcaattcaggaagtttgcagaattctt 228
           || |||||||  || ||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 646 ccctggtggaatgtgtttgatgctgatgaggcaggaattcaggaagtttgcagagttctt 705

                                                                       
Query: 229 gctcacctgcacagcctcccaaaggcacagtatataccagtgtataaagataatgattcc 288
           ||||| ||  |||||||||| ||| |||| ||||||| ||||||||| || |||||||||
Sbjct: 706 gctcatctctacagcctccccaagtcacaatatatacaagtgtataaggacaatgattcc 765

                                                                       
Query: 289 ttcagtgttagaagggccttggatacacacgcgtctaaggagagtccagcaagtgctgtt 348
           ||||    ||| ||| | |  |||||| | || || ||||| ||||| ||||   |||||
Sbjct: 766 ttcacgcataggaggacttctgatacaaatgcttcaaaggaaagtcctgcaacgactgtt 825

                                                                       
Query: 349 gctagtgataggggtactcctgtaccttcgagttctagccaggagaagaattcactgacc 408
           || || |||| |||||| |||||||| || |||||||||||||| ||| || ||||||  
Sbjct: 826 gcaagcgataagggtacccctgtaccgtcaagttctagccaggaaaaggatgcactgatt 885

                   
Query: 409 aaggcagg 416
           ||||||||
Sbjct: 886 aaggcagg 893



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                     
Query: 543  ggaaagagaaagaagtagatcaagaggccgtgaccgtgata 583
            |||||||||||||  |||||||||||| || ||||||||||
Sbjct: 1020 ggaaagagaaagagatagatcaagagggcgggaccgtgata 1060
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>dbj|AK069233.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012N02, full
            insert sequence
          Length = 1842

 Score =  270 bits (136), Expect = 5e-69
 Identities = 310/368 (84%)
 Strand = Plus / Plus

                                                                        
Query: 49   aaccttgccaatgatagcttgcggacaactctttgtgtacggtttaagagtgaagtagta 108
            ||||||||||| |||||||||||||||||||| |||||| | || ||||||||||| |||
Sbjct: 823  aaccttgccaacgatagcttgcggacaactctatgtgtaagattcaagagtgaagttgta 882

                                                                        
Query: 109  gcatgcggagttgtgtatgctgcagctaggaggcaccgggtccccctcccagaagagcct 168
            ||||| |||||||||||||||||||| ||||||||  | || |||||||| ||||| |||
Sbjct: 883  gcatgtggagttgtgtatgctgcagcaaggaggcatggcgtgcccctccctgaagatcct 942

                                                                        
Query: 169  ccttggtggacagtctttgatgctgatgaggcagcaattcaggaagtttgcagaattctt 228
            || |||||||  || ||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 943  ccctggtggaatgtgtttgatgctgatgaggcaggaattcaggaagtttgcagagttctt 1002

                                                                        
Query: 229  gctcacctgcacagcctcccaaaggcacagtatataccagtgtataaagataatgattcc 288
            ||||| ||  |||||||||| ||| |||| ||||||| ||||||||| || |||||||||
Sbjct: 1003 gctcatctctacagcctccccaagtcacaatatatacaagtgtataaggacaatgattcc 1062

                                                                        
Query: 289  ttcagtgttagaagggccttggatacacacgcgtctaaggagagtccagcaagtgctgtt 348
            ||||    ||| ||| | |  |||||| | || || ||||| ||||| ||||   |||||
Sbjct: 1063 ttcacgcataggaggacttctgatacaaatgcttcaaaggaaagtcctgcaacgactgtt 1122

                                                                        
Query: 349  gctagtgataggggtactcctgtaccttcgagttctagccaggagaagaattcactgacc 408
            || || |||| |||||| |||||||| || |||||||||||||| ||| || ||||||  
Sbjct: 1123 gcaagcgataagggtacccctgtaccgtcaagttctagccaggaaaaggatgcactgatt 1182

                    
Query: 409  aaggcagg 416
            ||||||||
Sbjct: 1183 aaggcagg 1190



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                     
Query: 543  ggaaagagaaagaagtagatcaagaggccgtgaccgtgata 583
            |||||||||||||  |||||||||||| || ||||||||||
Sbjct: 1317 ggaaagagaaagagatagatcaagagggcgggaccgtgata 1357
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  232 bits (117), Expect = 1e-57
 Identities = 201/229 (87%)
 Strand = Plus / Minus

                                                                            
Query: 64       agcttgcggacaactctttgtgtacggtttaagagtgaagtagtagcatgcggagttgtg 123
                ||||||||||||||||| |||||| | || ||||||||||| |||||||| |||||||||
Sbjct: 15601449 agcttgcggacaactctatgtgtaagattcaagagtgaagttgtagcatgtggagttgtg 15601390

                                                                            
Query: 124      tatgctgcagctaggaggcaccgggtccccctcccagaagagcctccttggtggacagtc 183
                ||||||||||| ||||||||  | || |||||||| ||||| ||||| |||||||  || 
Sbjct: 15601389 tatgctgcagcaaggaggcatggcgtgcccctccctgaagatcctccctggtggaatgtg 15601330

                                                                            
Query: 184      tttgatgctgatgaggcagcaattcaggaagtttgcagaattcttgctcacctgcacagc 243
                ||||||||||||||||||| ||||||||||||||||||| |||||||||| ||  |||||
Sbjct: 15601329 tttgatgctgatgaggcaggaattcaggaagtttgcagagttcttgctcatctctacagc 15601270

                                                                 
Query: 244      ctcccaaaggcacagtatataccagtgtataaagataatgattccttca 292
                ||||| ||| |||| ||||||| ||||||||| || |||||||||||||
Sbjct: 15601269 ctccccaagtcacaatatatacaagtgtataaggacaatgattccttca 15601221



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                            
Query: 344      ctgttgctagtgataggggtactcctgtaccttcgagttctagccaggagaagaattcac 403
                ||||||| || |||| |||||| |||||||| || |||||||||||||| ||| || |||
Sbjct: 15601091 ctgttgcaagcgataagggtacccctgtaccgtcaagttctagccaggaaaaggatgcac 15601032

                             
Query: 404      tgaccaaggcagg 416
                |||  ||||||||
Sbjct: 15601031 tgattaaggcagg 15601019



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                         
Query: 543      ggaaagagaaagaagtagatcaagaggccgtgaccgtgata 583
                |||||||||||||  |||||||||||| || ||||||||||
Sbjct: 15600892 ggaaagagaaagagatagatcaagagggcgggaccgtgata 15600852
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>dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0416G11
          Length = 138858

 Score =  232 bits (117), Expect = 1e-57
 Identities = 201/229 (87%)
 Strand = Plus / Minus

                                                                         
Query: 64    agcttgcggacaactctttgtgtacggtttaagagtgaagtagtagcatgcggagttgtg 123
             ||||||||||||||||| |||||| | || ||||||||||| |||||||| |||||||||
Sbjct: 39346 agcttgcggacaactctatgtgtaagattcaagagtgaagttgtagcatgtggagttgtg 39287

                                                                         
Query: 124   tatgctgcagctaggaggcaccgggtccccctcccagaagagcctccttggtggacagtc 183
             ||||||||||| ||||||||  | || |||||||| ||||| ||||| |||||||  || 
Sbjct: 39286 tatgctgcagcaaggaggcatggcgtgcccctccctgaagatcctccctggtggaatgtg 39227

                                                                         
Query: 184   tttgatgctgatgaggcagcaattcaggaagtttgcagaattcttgctcacctgcacagc 243
             ||||||||||||||||||| ||||||||||||||||||| |||||||||| ||  |||||
Sbjct: 39226 tttgatgctgatgaggcaggaattcaggaagtttgcagagttcttgctcatctctacagc 39167

                                                              
Query: 244   ctcccaaaggcacagtatataccagtgtataaagataatgattccttca 292
             ||||| ||| |||| ||||||| ||||||||| || |||||||||||||
Sbjct: 39166 ctccccaagtcacaatatatacaagtgtataaggacaatgattccttca 39118



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                         
Query: 344   ctgttgctagtgataggggtactcctgtaccttcgagttctagccaggagaagaattcac 403
             ||||||| || |||| |||||| |||||||| || |||||||||||||| ||| || |||
Sbjct: 38988 ctgttgcaagcgataagggtacccctgtaccgtcaagttctagccaggaaaaggatgcac 38929

                          
Query: 404   tgaccaaggcagg 416
             |||  ||||||||
Sbjct: 38928 tgattaaggcagg 38916



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 543   ggaaagagaaagaagtagatcaagaggccgtgaccgtgata 583
             |||||||||||||  |||||||||||| || ||||||||||
Sbjct: 38789 ggaaagagaaagagatagatcaagagggcgggaccgtgata 38749
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>emb|AJ606020.1| Triticum aestivum partial mRNA for putative cyclin (p0416G11.6
           gene)
          Length = 442

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 62/71 (87%), Gaps = 3/71 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   taccttgcaacactcgnancccctgnaattgacacaagnaagcatggnaaccttgccaat 60
           ||||| |||||||||| | |||||| |  ||||||||| |||| ||| ||||||||||||
Sbjct: 375 tacctagcaacactcgaagcccctg-agctgacacaag-aagcgtgg-aaccttgccaat 431

                      
Query: 61  gatagcttgcg 71
           |||||||||||
Sbjct: 432 gatagcttgcg 442
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>emb|BX649621.5| Mouse DNA sequence from clone RP23-173F3 on chromosome X, complete
             sequence
          Length = 195039

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 541   gaggaaagagaaagaagtagatcaa 565
             |||||||||||||||||||||||||
Sbjct: 13127 gaggaaagagaaagaagtagatcaa 13103
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>gb|AC105076.25| Mus musculus chromosome 3, clone RP23-258P2, complete sequence
          Length = 193458

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 546   aagagaaagaagtagatcaagaggcc 571
             ||||||||||| ||||||||||||||
Sbjct: 90542 aagagaaagaaatagatcaagaggcc 90517
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>gb|AC114268.2| Homo sapiens chromosome 19 clone LLNLR-244A1, complete sequence
          Length = 25329

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 474  aaatggaaaaggaggccaggca 495
            ||||||||||||||||||||||
Sbjct: 5999 aaatggaaaaggaggccaggca 6020
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>emb|CR620068.1| full-length cDNA clone CS0DI056YJ24 of Placenta Cot 25-normalized of
            Homo sapiens (human)
          Length = 2079

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 228  tgctcacctgcacagcctccca 249
            ||||||||||||||||||||||
Sbjct: 1438 tgctcacctgcacagcctccca 1417
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>gb|AC011471.6|AC011471 Homo sapiens chromosome 19 clone CTC-503J8, complete sequence
          Length = 154702

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 474    aaatggaaaaggaggccaggca 495
              ||||||||||||||||||||||
Sbjct: 153998 aaatggaaaaggaggccaggca 154019
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>emb|AL161669.5|CNS01RHC Human chromosome 14 DNA sequence BAC R-736N17 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 192462

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 228   tgctcacctgcacagcctccca 249
             ||||||||||||||||||||||
Sbjct: 99101 tgctcacctgcacagcctccca 99122
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>gb|BC039309.1| Homo sapiens solute carrier family 6 (neurotransmitter transporter,
            noradrenalin), member 2, mRNA (cDNA clone IMAGE:5270717),
            with apparent retained intron
          Length = 3177

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 224  ttcttgctcacctgcacagcctccc 248
            ||||||| |||||||||||||||||
Sbjct: 2705 ttcttgcacacctgcacagcctccc 2729
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>gb|AC123800.4| Mus musculus BAC clone RP24-343K18 from chromosome 1, complete sequence
          Length = 177367

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 91    tttaagagtgaagtagtagca 111
             |||||||||||||||||||||
Sbjct: 62189 tttaagagtgaagtagtagca 62169
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>gb|AC146680.3| Gasterosteus aculeatus clone CH213-10I3, complete sequence
          Length = 214256

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 183   ctttgatgctgatgaggcagc 203
             |||||||||||||||||||||
Sbjct: 79213 ctttgatgctgatgaggcagc 79193
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>gb|AC136621.2| Homo sapiens chromosome 16 clone RP11-481F24, complete sequence
          Length = 186021

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 224    ttcttgctcacctgcacagcctccc 248
              ||||||| |||||||||||||||||
Sbjct: 115391 ttcttgcacacctgcacagcctccc 115415
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>gb|AC026802.9| Homo sapiens chromosome 16 clone CTD-2545G24, complete sequence
          Length = 188923

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 224   ttcttgctcacctgcacagcctccc 248
             ||||||| |||||||||||||||||
Sbjct: 32711 ttcttgcacacctgcacagcctccc 32687
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>emb|AL356782.14| Human DNA sequence from clone RP11-47D15 on chromosome 6 Contains the
             5' end of transforming protein P21A (K-RAS) (C-K-RAS)
             pseudogene, complete sequence
          Length = 128386

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 538   gttgaggaaagagaaagaagt 558
             |||||||||||||||||||||
Sbjct: 60585 gttgaggaaagagaaagaagt 60605
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>gb|AC116653.4| Homo sapiens BAC clone RP11-1233B13 from 4, complete sequence
          Length = 55968

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 540  tgaggaaagagaaagaagtag 560
            |||||||||||||||||||||
Sbjct: 5900 tgaggaaagagaaagaagtag 5920
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>gb|AC007602.6| Homo sapiens chromosome 16 clone RP11-2D4, complete sequence
          Length = 167094

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 224   ttcttgctcacctgcacagcctccc 248
             ||||||| |||||||||||||||||
Sbjct: 99146 ttcttgcacacctgcacagcctccc 99122
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>emb|CR611590.1| full-length cDNA clone CS0DI021YL14 of Placenta Cot 25-normalized of
            Homo sapiens (human)
          Length = 3203

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 224  ttcttgctcacctgcacagcctccc 248
            ||||||| |||||||||||||||||
Sbjct: 2788 ttcttgcacacctgcacagcctccc 2812
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>ref|NM_001043.2| Homo sapiens solute carrier family 6 (neurotransmitter transporter,
            noradrenalin), member 2 (SLC6A2), mRNA
          Length = 3347

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 224  ttcttgctcacctgcacagcctccc 248
            ||||||| |||||||||||||||||
Sbjct: 2894 ttcttgcacacctgcacagcctccc 2918
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>emb|X91119.2|HSNETEX13 Homo sapiens partial SLC6A2 gene for norepinephrine transporter, exon
            13-15
          Length = 4532

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 224  ttcttgctcacctgcacagcctccc 248
            ||||||| |||||||||||||||||
Sbjct: 1679 ttcttgcacacctgcacagcctccc 1703
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>gb|AC107634.8| Mus musculus chromosome 5, clone RP23-19G21, complete sequence
          Length = 201345

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 475   aatggaaaaggaggccaggc 494
             ||||||||||||||||||||
Sbjct: 47978 aatggaaaaggaggccaggc 47997
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>gb|AC079956.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-106D2, complete
              sequence
          Length = 183441

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 236    tgcacagcctcccaaaggcacagt 259
              |||||||||||||| |||||||||
Sbjct: 127400 tgcacagcctcccagaggcacagt 127377
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>gb|AC123028.4| Mus musculus BAC clone RP24-553H21 from chromosome 10, complete
            sequence
          Length = 175143

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 273  taaagataatgattccttca 292
            ||||||||||||||||||||
Sbjct: 4041 taaagataatgattccttca 4060
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>ref|XM_948970.1| Theileria annulata strain Ankara hypothetical protein (TA06635)
            partial mRNA
          Length = 2520

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 581  atattaggggtagagattct 600
            ||||||||||||||||||||
Sbjct: 1091 atattaggggtagagattct 1072
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>gb|AC104906.6| Mus musculus chromosome 10, clone RP24-374K6, complete sequence
          Length = 179312

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 465   tgctgagctaaatggaaaag 484
             ||||||||||||||||||||
Sbjct: 57819 tgctgagctaaatggaaaag 57800
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>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome
          Length = 3523383

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 592     agagattctgatcacgagag 611
               ||||||||||||||||||||
Sbjct: 1144080 agagattctgatcacgagag 1144061
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>gb|AC158799.8| Mus musculus  BAC RP24-430K11 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 161705

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 273   taaagataatgattccttca 292
             ||||||||||||||||||||
Sbjct: 88707 taaagataatgattccttca 88688
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>emb|AL731863.7| Mouse DNA sequence from clone RP23-442P4 on chromosome 11 Contains a
             CpG island, complete sequence
          Length = 39667

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   tatataccagtgtataaaga 278
             ||||||||||||||||||||
Sbjct: 22103 tatataccagtgtataaaga 22084
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>emb|CR753866.9| Zebrafish DNA sequence from clone DKEYP-110C7 in linkage group 5,
             complete sequence
          Length = 72925

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 173   ggtggacagtctttgatgctgatg 196
             ||||||||||||| ||||||||||
Sbjct: 21617 ggtggacagtcttggatgctgatg 21594
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>ref|XM_682834.1| PREDICTED: Danio rerio similar to Protein CGI-38 (LOC559490), mRNA
          Length = 830

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 173 ggtggacagtctttgatgctgatg 196
           ||||||||||||| ||||||||||
Sbjct: 78  ggtggacagtcttggatgctgatg 55
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>ref|XM_687937.1| PREDICTED: Danio rerio similar to acetyl-Coenzyme A carboxylase
           alpha isoform 1 (LOC564607), partial mRNA
          Length = 3791

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 199 gcagcaattcaggaagtttg 218
           ||||||||||||||||||||
Sbjct: 886 gcagcaattcaggaagtttg 867
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>ref|XM_691916.1| PREDICTED: Danio rerio similar to Protein CGI-38 (LOC568581), mRNA
          Length = 825

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 173 ggtggacagtctttgatgctgatg 196
           ||||||||||||| ||||||||||
Sbjct: 78  ggtggacagtcttggatgctgatg 55
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>emb|BX510647.10| Zebrafish DNA sequence from clone CH211-87N9 in linkage group 5, complete
              sequence
          Length = 198695

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 173    ggtggacagtctttgatgctgatg 196
              ||||||||||||| ||||||||||
Sbjct: 159869 ggtggacagtcttggatgctgatg 159846
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>gb|AC154373.2| Mus musculus BAC clone RP23-79I18 from chromosome 9, complete sequence
          Length = 225286

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 476    atggaaaaggaggccaggca 495
              ||||||||||||||||||||
Sbjct: 174175 atggaaaaggaggccaggca 174194
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>gb|AC159468.4| Mus musculus 10 BAC RP23-335A3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 214532

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 465    tgctgagctaaatggaaaag 484
              ||||||||||||||||||||
Sbjct: 213632 tgctgagctaaatggaaaag 213613
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>emb|BX901941.5| Mouse DNA sequence from clone RP23-344H22 on chromosome X, complete
             sequence
          Length = 138091

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 542   aggaaagagaaagaagtagatcaa 565
             |||||| |||||||||||||||||
Sbjct: 47072 aggaaaaagaaagaagtagatcaa 47095
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>gb|AC084452.1|AC084452 Caenorhabditis briggsae cosmid CB024D21, complete sequence
          Length = 93590

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 481  aaaggaggccaggcagcaaa 500
            ||||||||||||||||||||
Sbjct: 8833 aaaggaggccaggcagcaaa 8814
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>emb|BX649564.3| Mouse DNA sequence from clone RP23-405A18 on chromosome 2, complete
             sequence
          Length = 38414

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 537   tgttgaggaaagagaaagaa 556
             ||||||||||||||||||||
Sbjct: 35263 tgttgaggaaagagaaagaa 35282
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>emb|AL808134.17| Mouse DNA sequence from clone RP23-135E1 on chromosome X, complete
              sequence
          Length = 195763

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 542    aggaaagagaaagaagtagatcaa 565
              |||||| |||||||||||||||||
Sbjct: 104748 aggaaaaagaaagaagtagatcaa 104771
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>gb|AC006840.17|AC006840 Homo sapiens chromosome 4 clone C0422C23, complete sequence
          Length = 201657

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 266    cagtgtataaagataatgat 285
              ||||||||||||||||||||
Sbjct: 143978 cagtgtataaagataatgat 143959
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>dbj|AP002748.4| Homo sapiens genomic DNA, chromosome 11 clone:CTD-3074O7, complete
             sequence
          Length = 176017

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 232   cacctgcacagcctcccaaa 251
             ||||||||||||||||||||
Sbjct: 35583 cacctgcacagcctcccaaa 35564
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>emb|CR405701.20| Zebrafish DNA sequence from clone CH211-45M20 in linkage group 5,
             complete sequence
          Length = 125284

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 173   ggtggacagtctttgatgctgatg 196
             ||||||||||||| ||||||||||
Sbjct: 37388 ggtggacagtcttggatgctgatg 37411
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>emb|AL935115.6| Zebrafish DNA sequence from clone CH211-199D18, complete sequence
          Length = 187326

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 199    gcagcaattcaggaagtttg 218
              ||||||||||||||||||||
Sbjct: 156137 gcagcaattcaggaagtttg 156118
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>emb|AL772278.7| Mouse DNA sequence from clone RP23-416G5 on chromosome 4, complete
              sequence
          Length = 199565

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 291    cagtgttagaagggccttgg 310
              ||||||||||||||||||||
Sbjct: 177462 cagtgttagaagggccttgg 177481


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,423,619
Number of Sequences: 3902068
Number of extensions: 6423619
Number of successful extensions: 114732
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114582
Number of HSP's gapped (non-prelim): 150
length of query: 626
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 603
effective length of database: 17,143,297,704
effective search space: 10337408515512
effective search space used: 10337408515512
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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