ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd23l21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LX15B_RAT (Q8K4F2) Arachidonate 15-lipoxygenase type II (EC 1.13... 32 0.92
2YAC4_SCHPO (Q09818) Putative general negative regulator of trans... 31 2.1

>LX15B_RAT (Q8K4F2) Arachidonate 15-lipoxygenase type II (EC 1.13.11.33)|
           (15-LOX-2)
          Length = 677

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
 Frame = -3

Query: 444 HGQPLQAGLPQRSAKPAAWWQKPWLRLSWSPG------CHSW 337
           H  P +A LP  S  P AW+ + W  L W PG      C+ W
Sbjct: 70  HKAPPEAPLPLLSFPPDAWYCR-WFELEWLPGAALRFPCYQW 110



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>YAC4_SCHPO (Q09818) Putative general negative regulator of transcription|
           C16C9.04c
          Length = 489

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 66  MPETKTSSYELVAAPAASVQHIQ--HHQHPDATGRSSISCHRHSNSVTRWY 212
           +P TKT   E  ++PAA  QHI    H HP  +   S+S +  + SV   Y
Sbjct: 271 LPVTKTPLEEANSSPAAQNQHITTVDHVHPQVSMTPSLSTNNTATSVPAPY 321


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,028,080
Number of Sequences: 219361
Number of extensions: 835394
Number of successful extensions: 2853
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2850
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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