ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd24a19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1V002_FOWPV (Q9ICF9) Hypothetical protein FPV002/FPV259 30 1.3
2DEOC_PELCD (Q3A247) Deoxyribose-phosphate aldolase (EC 4.1.2.4) ... 28 8.7

>V002_FOWPV (Q9ICF9) Hypothetical protein FPV002/FPV259|
          Length = 222

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +2

Query: 62  SWIRRQCIELFIWSWDAVCIPPPC*ISVIGFRTVMDVVTKK 184
           +W+   C +L +W W   C    C       RT+ D  TKK
Sbjct: 160 TWVNDWCEDLCVWIWSPCCYVKRC------IRTMCDTFTKK 194



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>DEOC_PELCD (Q3A247) Deoxyribose-phosphate aldolase (EC 4.1.2.4)|
           (Phosphodeoxyriboaldolase) (Deoxyriboaldolase) (DERA)
          Length = 221

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 68  IRRQCIELFIWSWDAVCIPP 127
           IR+ C+E   W + +VCIPP
Sbjct: 22  IRQLCLEAAHWQFASVCIPP 41


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,820,069
Number of Sequences: 219361
Number of extensions: 394638
Number of successful extensions: 893
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 80,573,946
effective HSP length: 38
effective length of database: 72,238,228
effective search space used: 1733717472
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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