ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd24a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MTR1A_PIG (O02781) Melatonin receptor type 1A (Mel-1A-R) (Mel1a ... 30 3.9
2MURG_CHLTE (Q8KGD4) UDP-N-acetylglucosamine--N-acetylmuramyl-(pe... 30 3.9
3IAAC2_WHEAT (P16851) Alpha-amylase/trypsin inhibitor CM2 precurs... 30 5.0
4GUAA_DESVH (Q72D86) GMP synthase [glutamine-hydrolyzing] (EC 6.3... 30 6.6
5CLD9_MOUSE (Q9Z0S7) Claudin-9 30 6.6
6RS27A_AERPE (P61297) 30S ribosomal protein S27ae 29 8.6
7GCH1_BIFLO (Q8G3S1) GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I) 29 8.6
8IAAC1_WHEAT (P16850) Alpha-amylase/trypsin inhibitor CM1 precurs... 29 8.6

>MTR1A_PIG (O02781) Melatonin receptor type 1A (Mel-1A-R) (Mel1a melatonin|
           receptor) (Fragment)
          Length = 154

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -1

Query: 295 WHITRYDLCTAYMICASSSVTQI--LTVAVLHFDPVCCRCSRLWSSIHTFASSMSS 134
           W+  R  LC  ++IC  + V  +  L +  L +DP    C        TFA S+SS
Sbjct: 13  WYSNRNSLCCVFLICVLTLVAIVPNLCMGTLQYDPRIYSC--------TFAQSVSS 60



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>MURG_CHLTE (Q8KGD4) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 364

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 264 AVHKSYLVICHGVMHTVYICMSNHSVNLDKIRNLVIGTARRW--PYVNKLFHLVGCFGL 434
           A++ + L +CH +  TV +     +++ D++R  +  +A RW  PY+ ++    G   L
Sbjct: 204 AINNAVLKLCHRLEGTVNLIWQTGALDADRMRGEIGTSATRWIGPYIQEMGKAYGAADL 262



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>IAAC2_WHEAT (P16851) Alpha-amylase/trypsin inhibitor CM2 precursor|
           (Chloroform/methanol-soluble protein CM2)
          Length = 145

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 383 PGCPND*VADFIQIDRMIGHTNVYSVHYT 297
           PGCP +   DF ++    GH NV +VH T
Sbjct: 109 PGCPREPQRDFAKVLVTPGHCNVMTVHNT 137



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>GUAA_DESVH (Q72D86) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)|
           (Glutamine amidotransferase) (GMP synthetase)
          Length = 515

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +3

Query: 117 CPAWP-MELIDEAKVWIELHKRLHLQHTGSKC--STATVRICVTDDEAHIIYAV 269
           CP W  ++L   ++VW+    ++     G K    TAT+ +    DEA  IYAV
Sbjct: 116 CPLWDGLDLGTTSRVWMSHGDKVKTPPPGFKVVGRTATLEVAAMADEARRIYAV 169



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>CLD9_MOUSE (Q9Z0S7) Claudin-9|
          Length = 217

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = +3

Query: 195 TGSKCSTATVRICVTDDEAHIIYAVHKSYLVICHGVMHTVYICMSNHSVNLDKIRNLVIG 374
           TG++C+T     CV D+ A     +    L++  G++  + +C + H++  D    LV  
Sbjct: 100 TGAQCTT-----CVEDEGAKARIVLTAGVLLLLSGILVLIPVCWTAHAIIQDFYNPLVAE 154

Query: 375 TARR 386
             +R
Sbjct: 155 ALKR 158



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>RS27A_AERPE (P61297) 30S ribosomal protein S27ae|
          Length = 63

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 12  HAXYDSEXDFVVIRXAAASCPRCSSLYPYHGRP 110
           H  Y+ + +  VI+     CPRC S+  +H +P
Sbjct: 12  HKLYEVDYEKGVIKLKNRRCPRCGSIMAHHMKP 44



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>GCH1_BIFLO (Q8G3S1) GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I)|
          Length = 199

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 258 IYAVHKSYLVICHGVMHTVYICMSNHSVNLDKIRNLVIGTARR 386
           +Y+V + +L+  HGV H  YI   +  + L K+  LV   ARR
Sbjct: 85  LYSVCEHHLLPFHGVAHVGYIPAKDGVMGLSKLARLVEVYARR 127



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>IAAC1_WHEAT (P16850) Alpha-amylase/trypsin inhibitor CM1 precursor|
           (Chloroform/methanol-soluble protein CM1)
          Length = 145

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 383 PGCPND*VADFIQIDRMIGHTNVYSVH 303
           PGCP +   DF ++    GH NV +VH
Sbjct: 109 PGCPREPQRDFAKVLVTSGHCNVMTVH 135


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,165,437
Number of Sequences: 219361
Number of extensions: 2121381
Number of successful extensions: 4992
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4990
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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