| Clone Name | basd24a11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK098979.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093C17, full insert sequence Length = 1120 Score = 125 bits (63), Expect = 2e-25 Identities = 150/177 (84%), Gaps = 4/177 (2%) Strand = Plus / Plus Query: 34 aagattttgtggtcataaggnaggccgctgcttcttgcccaaggtgctccagcctatatc 93 |||||||||||||||||||| ||||| || || |||||||||||||||| || ||| | Sbjct: 624 aagattttgtggtcataagg-aggccacttctggttgcccaaggtgctcccgcttatctt 682 Query: 94 cctaccacggccgacccaagaggtgcccagcctggcctatggagctcatcgatgaggcaa 153 |||||||| ||||| | |||||| ||| || ||||||||||||||| ||||| || Sbjct: 683 cctaccaccgccgatactagaggtttccatccaggcctatggagctcaagaatgagacac 742 Query: 154 aagtatggattgaactccacaagcgactacacctacaacacactggatcaaaatgca 210 |||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| Sbjct: 743 aagtatggattgaact---caagcaactacacctacaacacactggatccaaatgca 796
>dbj|AK120175.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013033B05, full insert sequence Length = 1693 Score = 117 bits (59), Expect = 4e-23 Identities = 149/177 (84%), Gaps = 4/177 (2%) Strand = Plus / Plus Query: 34 aagattttgtggtcataaggnaggccgctgcttcttgcccaaggtgctccagcctatatc 93 |||||||||||||||||||| ||||| || || |||||||||||||||| || ||| | Sbjct: 752 aagattttgtggtcataagg-aggccacttctggttgcccaaggtgctcccgcttatctt 810 Query: 94 cctaccacggccgacccaagaggtgcccagcctggcctatggagctcatcgatgaggcaa 153 |||||||| ||||| | |||||| ||| || | ||||||||||||| ||||| || Sbjct: 811 cctaccaccgccgatactagaggtttccatccagacctatggagctcaagaatgagacac 870 Query: 154 aagtatggattgaactccacaagcgactacacctacaacacactggatcaaaatgca 210 |||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| Sbjct: 871 aagtatggattgaact---caagcaactacacctacaacacactggatccaaatgca 924
>dbj|AK065285.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M13, full insert sequence Length = 1136 Score = 117 bits (59), Expect = 4e-23 Identities = 149/177 (84%), Gaps = 4/177 (2%) Strand = Plus / Plus Query: 34 aagattttgtggtcataaggnaggccgctgcttcttgcccaaggtgctccagcctatatc 93 |||||||||||||||||||| ||||| || || |||||||||||||||| || ||| | Sbjct: 624 aagattttgtggtcataagg-aggccacttctggttgcccaaggtgctcccgcttatctt 682 Query: 94 cctaccacggccgacccaagaggtgcccagcctggcctatggagctcatcgatgaggcaa 153 |||||||| ||||| | |||||| ||| || | ||||||||||||| ||||| || Sbjct: 683 cctaccaccgccgatactagaggtttccatccagacctatggagctcaagaatgagacac 742 Query: 154 aagtatggattgaactccacaagcgactacacctacaacacactggatcaaaatgca 210 |||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| Sbjct: 743 aagtatggattgaact---caagcaactacacctacaacacactggatccaaatgca 796
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 67.9 bits (34), Expect = 4e-08 Identities = 51/56 (91%), Gaps = 3/56 (5%) Strand = Plus / Plus Query: 155 agtatggattgaactccacaagcgactacacctacaacacactggatcaaaatgca 210 |||||||||||||||| |||| |||||||||||||||||||||||| ||||||| Sbjct: 30668005 agtatggattgaactc---aagcaactacacctacaacacactggatccaaatgca 30668057 Score = 63.9 bits (32), Expect = 5e-07 Identities = 90/108 (83%), Gaps = 1/108 (0%) Strand = Plus / Plus Query: 34 aagattttgtggtcataaggnaggccgctgcttcttgcccaaggtgctccagcctatatc 93 |||||||||||||||||||| ||||| || || |||||||||||||||| || ||| | Sbjct: 30666795 aagattttgtggtcataagg-aggccacttctggttgcccaaggtgctcccgcttatctt 30666853 Query: 94 cctaccacggccgacccaagaggtgcccagcctggcctatggagctca 141 |||||||| ||||| | |||||| ||| || | ||||||||||||| Sbjct: 30666854 cctaccaccgccgatactagaggtttccatccagacctatggagctca 30666901
>dbj|AP006616.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1206D04 Length = 130176 Score = 67.9 bits (34), Expect = 4e-08 Identities = 51/56 (91%), Gaps = 3/56 (5%) Strand = Plus / Plus Query: 155 agtatggattgaactccacaagcgactacacctacaacacactggatcaaaatgca 210 |||||||||||||||| |||| |||||||||||||||||||||||| ||||||| Sbjct: 70661 agtatggattgaactc---aagcaactacacctacaacacactggatccaaatgca 70713 Score = 63.9 bits (32), Expect = 5e-07 Identities = 90/108 (83%), Gaps = 1/108 (0%) Strand = Plus / Plus Query: 34 aagattttgtggtcataaggnaggccgctgcttcttgcccaaggtgctccagcctatatc 93 |||||||||||||||||||| ||||| || || |||||||||||||||| || ||| | Sbjct: 69451 aagattttgtggtcataagg-aggccacttctggttgcccaaggtgctcccgcttatctt 69509 Query: 94 cctaccacggccgacccaagaggtgcccagcctggcctatggagctca 141 |||||||| ||||| | |||||| ||| || | ||||||||||||| Sbjct: 69510 cctaccaccgccgatactagaggtttccatccagacctatggagctca 69557
>gb|AC131761.4| Mus musculus BAC clone RP24-228J4 from chromosome 18, complete sequence Length = 167442 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 gcccagcctggcctatggagc 138 ||||||||||||||||||||| Sbjct: 158490 gcccagcctggcctatggagc 158470
>gb|AC124393.5| Mus musculus BAC clone RP24-331E1 from chromosome 18, complete sequence Length = 171769 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 118 gcccagcctggcctatggagc 138 ||||||||||||||||||||| Sbjct: 137227 gcccagcctggcctatggagc 137247
>gb|AC161511.3| Mus musculus chromosome 18, clone RP23-37O16, complete sequence Length = 186860 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 gcccagcctggcctatggagc 138 ||||||||||||||||||||| Sbjct: 18662 gcccagcctggcctatggagc 18642
>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome Length = 2799802 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 tgtgactgatgacgaagcaca 253 ||||||||||||||||||||| Sbjct: 2035858 tgtgactgatgacgaagcaca 2035838
>gb|AF424783.1| Staphylococcus aureus phage phi 13, complete genome Length = 42722 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 tgtgactgatgacgaagcaca 253 ||||||||||||||||||||| Sbjct: 32782 tgtgactgatgacgaagcaca 32802
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 373 ggacagccaggaggtggccgt 393 ||||||||||||||||||||| Sbjct: 2964315 ggacagccaggaggtggccgt 2964335
>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome Length = 2878529 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 tgtgactgatgacgaagcaca 253 ||||||||||||||||||||| Sbjct: 2093520 tgtgactgatgacgaagcaca 2093500
>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome Length = 2821361 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 tgtgactgatgacgaagcaca 253 ||||||||||||||||||||| Sbjct: 2041851 tgtgactgatgacgaagcaca 2041831
>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2 Length = 2820462 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 tgtgactgatgacgaagcaca 253 ||||||||||||||||||||| Sbjct: 2056612 tgtgactgatgacgaagcaca 2056592
>emb|AL163636.7|CNS01RIK Human chromosome 14 DNA sequence BAC R-903H12 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 202337 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 ttctgtcaatctggataaaat 355 ||||||||||||||||||||| Sbjct: 128789 ttctgtcaatctggataaaat 128769
>gb|AC135928.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0686B10, complete sequence Length = 159672 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 542 gtaatgctagtacaattttcattt 565 ||||||||||||||||||| |||| Sbjct: 21159 gtaatgctagtacaatttttattt 21136
>ref|XM_745050.1| Aspergillus fumigatus Af293 translation regulator Cya5 (Afu1g03930) partial mRNA Length = 3888 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 tgtgactgatgacgaagcac 252 |||||||||||||||||||| Sbjct: 3516 tgtgactgatgacgaagcac 3535
>gb|AC154334.2| Mus musculus BAC clone RP24-497L7 from chromosome 14, complete sequence Length = 127819 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 474 ggaatggaagtatttgcatt 493 |||||||||||||||||||| Sbjct: 19910 ggaatggaagtatttgcatt 19929
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 acatatcatatatgcagtac 270 |||||||||||||||||||| Sbjct: 1925469 acatatcatatatgcagtac 1925488
>emb|AL355775.1|ATF12M12 Arabidopsis thaliana DNA chromosome 3, BAC clone F12M12 Length = 106730 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 255 atcatatatgcagtacataagtca 278 ||||||||||||||||||| |||| Sbjct: 86980 atcatatatgcagtacataggtca 87003
>emb|CR938201.1| Single read from an extremity of a full-length cDNA clone made from Aedes aegypti total adult females. 5-prime end of clone KW0AAA2YH06AAM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 903 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 410 ccatcttgttggatgttttgggct 433 |||||||| ||||||||||||||| Sbjct: 81 ccatcttgctggatgttttgggct 58
>emb|CR938178.1| Single read from an extremity of a full-length cDNA clone made from Aedes aegypti total adult females. 5-prime end of clone KW0AAA2YH20AAM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 904 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 410 ccatcttgttggatgttttgggct 433 |||||||| ||||||||||||||| Sbjct: 81 ccatcttgctggatgttttgggct 58
>emb|CR938166.1| Single read from an extremity of a full-length cDNA clone made from Aedes aegypti total adult females. 5-prime end of clone KW0AAA2YI05AAM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 910 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 410 ccatcttgttggatgttttgggct 433 |||||||| ||||||||||||||| Sbjct: 81 ccatcttgctggatgttttgggct 58
>emb|CR938016.1| Single read from an extremity of a full-length cDNA clone made from Aedes aegypti total adult females. 5-prime end of clone KW0AAA2YN08AAM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 882 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 410 ccatcttgttggatgttttgggct 433 |||||||| ||||||||||||||| Sbjct: 58 ccatcttgctggatgttttgggct 35
>emb|BX005459.6| Zebrafish DNA sequence from clone CH211-214N22 in linkage group 6, complete sequence Length = 211210 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 tatttgcattggatgtgtat 503 |||||||||||||||||||| Sbjct: 189053 tatttgcattggatgtgtat 189072
>emb|BX511190.8| Zebrafish DNA sequence from clone RP71-80D18 in linkage group 5, complete sequence Length = 156408 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 cactgtatacatttgtatgt 327 |||||||||||||||||||| Sbjct: 81142 cactgtatacatttgtatgt 81123
>ref|XM_691600.1| PREDICTED: Danio rerio similar to spinster-like (LOC568280), mRNA Length = 1179 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 tagtcggagagatggatgag 471 |||||||||||||||||||| Sbjct: 217 tagtcggagagatggatgag 198
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 gttagtaaaagaacattata 539 |||||||||||||||||||| Sbjct: 4128420 gttagtaaaagaacattata 4128401
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 542 gtaatgctagtacaattttcattt 565 ||||||||||||||||||| |||| Sbjct: 17223847 gtaatgctagtacaatttttattt 17223824
>gb|AC116849.11| Mus musculus chromosome 19, clone RP24-395F1, complete sequence Length = 168486 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 acaacacactggatcaaaat 207 |||||||||||||||||||| Sbjct: 78921 acaacacactggatcaaaat 78940
>dbj|AP005606.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1590_E05 Length = 148205 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 gttagtaaaagaacattata 539 |||||||||||||||||||| Sbjct: 28043 gttagtaaaagaacattata 28024
>emb|BX005059.4| Zebrafish DNA sequence from clone CH211-138A6, complete sequence Length = 194603 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 tagtcggagagatggatgag 471 |||||||||||||||||||| Sbjct: 107520 tagtcggagagatggatgag 107501
>dbj|AP005501.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0458D06 Length = 166038 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 gttagtaaaagaacattata 539 |||||||||||||||||||| Sbjct: 121533 gttagtaaaagaacattata 121514
>gb|AF109296.1|AF109296 Leishmania donovani proton motive P-type ATPase gene locus, complete sequence Length = 15413 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 tgcttcttgcccaaggtgct 81 |||||||||||||||||||| Sbjct: 11342 tgcttcttgcccaaggtgct 11361 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,828,067 Number of Sequences: 3902068 Number of extensions: 5828067 Number of successful extensions: 100229 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99941 Number of HSP's gapped (non-prelim): 278 length of query: 583 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 560 effective length of database: 17,143,297,704 effective search space: 9600246714240 effective search space used: 9600246714240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)