ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd24a09 |
|---|---|
| Clone Library Name | barley_pub |
>TNKS1_HUMAN (O95271) Tankyrase 1 (EC 2.4.2.30) (TANK1) (Tankyrase I) (TNKS-1)| (TRF1-interacting ankyrin-related ADP-ribose polymerase) Length = 1327 Score = 34.7 bits (78), Expect = 0.20 Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 4/52 (7%) Frame = +2 Query: 65 PSPPLIPASTLLPVPAT-TQXGRAP---PRHGRVRPRRQAERDPQDQQQPGD 208 P PPL P PA+ T G AP PRHG P RDP D+ + D Sbjct: 31 PPPPLSPGLAPGTTPASPTASGLAPFASPRHGLALPEGDGSRDPPDRPRSPD 82
>TBCD5_MOUSE (Q80XQ2) TBC1 domain family member 5| Length = 815 Score = 33.9 bits (76), Expect = 0.34 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 11/68 (16%) Frame = +2 Query: 56 RQWPSPPLIPASTLLPVPAT-----------TQXGRAPPRHGRVRPRRQAERDPQDQQQP 202 R+ SP P S PVP T+ PRH ++ ++Q + Q QQQP Sbjct: 466 RKLISPASAPGSMGGPVPGNNSSSSFSAAIPTRTSTEAPRHHLLQQQQQQQHQQQQQQQP 525 Query: 203 GDHRQAHQ 226 +Q HQ Sbjct: 526 QQQQQQHQ 533
>CBPA_DICDI (P35085) Calcium-binding protein| Length = 467 Score = 33.1 bits (74), Expect = 0.58 Identities = 18/49 (36%), Positives = 23/49 (46%) Frame = +2 Query: 65 PSPPLIPASTLLPVPATTQXGRAPPRHGRVRPRRQAERDPQDQQQPGDH 211 P P P S L P P T Q G AP G+ P++ + PQ PG + Sbjct: 48 PQQPGAPGSNLPPYPGTQQPG-APGAPGQYPPQQPGQYPPQQPGAPGQY 95
>MMPS3_MYCTU (P65378) Putative membrane protein mmpS3| Length = 299 Score = 32.0 bits (71), Expect = 1.3 Identities = 14/25 (56%), Positives = 15/25 (60%) Frame = +2 Query: 65 PSPPLIPASTLLPVPATTQXGRAPP 139 P PP PA+T P PATT APP Sbjct: 178 PPPPPPPATTTAPPPATTTTAAAPP 202
>MMPS3_MYCBO (P65379) Putative membrane protein mmpS3| Length = 299 Score = 32.0 bits (71), Expect = 1.3 Identities = 14/25 (56%), Positives = 15/25 (60%) Frame = +2 Query: 65 PSPPLIPASTLLPVPATTQXGRAPP 139 P PP PA+T P PATT APP Sbjct: 178 PPPPPPPATTTAPPPATTTTAAAPP 202
>DHH1_CRYNE (Q5KJI2) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)| Length = 625 Score = 32.0 bits (71), Expect = 1.3 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%) Frame = +2 Query: 44 PALXRQWPSPPLIPASTLLPVPATTQXGRAP---PRHGRVRPRRQAERDPQDQQQPGDHR 214 P+ +Q P+ PA P PA + +AP P G++ P Q Q QQQPG Sbjct: 513 PSYSQQAPTQAQGPAPVQSPPPAPSTQPQAPAQTPIQGQIPPT-QPRAQQQGQQQPGQPG 571 Query: 215 QA 220 QA Sbjct: 572 QA 573
>FIBB_PETMA (P02678) Fibrinogen beta chain [Contains: Fibrinopeptide B]| (Fragments) Length = 477 Score = 30.8 bits (68), Expect = 2.9 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +2 Query: 101 PVPATTQXGRAPPRHGRVRPRRQAERDPQDQQQPGDHRQA 220 P+P+ T+ R P RH R+ P RDP +P + ++A Sbjct: 38 PLPSGTRVRRPPLRHRRLAPGAVMSRDPPASPRPQEAQKA 77
>EMS_DROME (P18488) Homeotic protein empty spiracles| Length = 497 Score = 30.4 bits (67), Expect = 3.7 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Frame = +2 Query: 68 SPPLIPASTLLPVPATTQXG-RAPPRHGRVRPRRQAERDPQDQQQPGDHRQA 220 SPP P +TL +P + APP HG P P QQQ H QA Sbjct: 63 SPPQTPPATLTLIPGSPPHHLMAPPAHGLPYPH------PHAQQQQQQHLQA 108
>SSY21_ORYSA (Q7XE48) Soluble starch synthase 2-1, chloroplast precursor (EC| 2.4.1.21) (Soluble starch synthase II-1) Length = 749 Score = 30.0 bits (66), Expect = 4.9 Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 8/61 (13%) Frame = -1 Query: 207 SPGC--CWSCGSRSA--CLRGRTRPWRGGARPXWVVAGTGR----SVDAGISGGDGHCRX 52 SPGC CW G R RP ARP W V R V+A SG CR Sbjct: 18 SPGCHSCWGPGPGGGRRLPSPRRRPITAAARPTWAVPRRSRLEWGRVEAQNSGARTSCRA 77 Query: 51 S 49 + Sbjct: 78 A 78
>SHC2_MOUSE (Q8BMC3) SHC transforming protein 2 (SH2 domain protein C2) (Src| homology 2 domain-containing transforming protein C2) (Protein Sck) (Protein Sli) Length = 548 Score = 29.6 bits (65), Expect = 6.4 Identities = 19/45 (42%), Positives = 22/45 (48%) Frame = +2 Query: 44 PALXRQWPSPPLIPASTLLPVPATTQXGRAPPRHGRVRPRRQAER 178 P L QWPSPP A P Q + P HGR+ RR AE+ Sbjct: 425 PPLEDQWPSPPTRRAPI---APTEEQLRQEPWYHGRM-SRRAAEK 465
>HXT2_YEAST (P23585) High-affinity glucose transporter HXT2| Length = 541 Score = 29.6 bits (65), Expect = 6.4 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +3 Query: 441 ASYHTLLCYMVFRRFGGFTYPWISSLMLSGIYRNTD 548 A+Y T++C + FGGF + W + +SG TD Sbjct: 51 AAYWTVICLCLMIAFGGFVFGWDTG-TISGFVNQTD 85
>ARHG7_RAT (O55043) Rho guanine nucleotide exchange factor 7 (PAK-interacting| exchange factor beta) (Beta-Pix) Length = 646 Score = 29.3 bits (64), Expect = 8.3 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +2 Query: 65 PSPPLIPASTLLPVPATTQXGRAPPRHGRVRPRRQAERDPQDQQ 196 P+PPL P++ L R+P ++ P+R+ ER P D++ Sbjct: 479 PAPPLRPSAALC---YKEDLSRSPKTMKKLLPKRKPERKPSDEE 519
>CLIC6_HUMAN (Q96NY7) Chloride intracellular channel 6| Length = 704 Score = 29.3 bits (64), Expect = 8.3 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = +2 Query: 125 GRAPPRHGRVRPRRQAERDPQDQQQPGDHRQAHQ 226 G +P R + PR +A+R+P+D P +A Q Sbjct: 110 GASPGRGAQGEPRGEAQREPEDSAAPERQEEAEQ 143 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,380,731 Number of Sequences: 219361 Number of extensions: 1098973 Number of successful extensions: 4454 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4035 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4423 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
