| Clone Name | basd23l08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK065464.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013020H24, full insert sequence Length = 2893 Score = 363 bits (183), Expect = 3e-97 Identities = 378/443 (85%) Strand = Plus / Plus Query: 2 cagattgctttcacgacggttgtgttcccatgtcttcttttgcaatatactggtcaagct 61 |||||||||||||| ||||||||||||||| |||||| |||||||||||||||| ||| Sbjct: 1394 cagattgctttcactgtggttgtgttcccatgccttcttctgcaatatactggtcaggct 1453 Query: 62 gcctatatagccacgcacaaagacaaagtctcccactccttctatttttctcttccagag 121 || | |||||| | ||| | || ||||| ||| |||||||| | || ||||||| Sbjct: 1454 gcgtttatagctgcaaacacaaaccaagtcagccatgccttctatatctcccttccagct 1513 Query: 122 cgtatactttggccagcatttgttgttgcaacggctgctgcaatagtttctagccaggca 181 | |||||||||||||||||||| |||||||| || |||||||||||| |||| ||||| Sbjct: 1514 cctatactttggccagcatttgccgttgcaacagcagctgcaatagttgctagtcaggcc 1573 Query: 182 actatttccgcaacatactcaatcatcaagcaagcgcttgcggtgggctgcttccccaga 241 ||||| || |||||||| || || ||||||||||| ||||| | || ||||| ||| || Sbjct: 1574 actatatctgcaacatattcgattatcaagcaagcacttgccctagggtgctttccccga 1633 Query: 242 gtgaagatcatccatacttccaagaagtatcttggccagatatacagccccgatattaat 301 |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct: 1634 gtgaagatcatccatacttccaagaagtatctcggccagatatacagccctgatattaac 1693 Query: 302 tggatcctcctgattctctgtattgccgtcacggctgggttcaagaatcagtcccagatt 361 ||||||||| || || |||| || || ||||| || |||||||| || || ||||||||| Sbjct: 1694 tggatcctcatggttttctgcatagctgtcactgcagggttcaaaaaccaatcccagatt 1753 Query: 362 gcaaatgcttatggtacagctgtgataatggttatgcttgtgacgacatttctcatgatc 421 |||||||| |||||||| |||||||| ||||||||||||||||| |||||||| |||||| Sbjct: 1754 gcaaatgcatatggtactgctgtgatcatggttatgcttgtgacaacatttctgatgatc 1813 Query: 422 cccataatgctgctggtatggcg 444 ||||| ||||||||||| ||||| Sbjct: 1814 cccatcatgctgctggtgtggcg 1836
>gb|AY108668.1| Zea mays PCO064352 mRNA sequence Length = 1690 Score = 343 bits (173), Expect = 3e-91 Identities = 377/445 (84%) Strand = Plus / Plus Query: 1 gcagattgctttcacgacggttgtgttcccatgtcttcttttgcaatatactggtcaagc 60 |||||||||||||||| ||||||||| ||||||||||||||||| ||||| || ||||| Sbjct: 100 gcagattgctttcacggtggttgtgtttccatgtcttcttttgcagtatacaggccaagc 159 Query: 61 tgcctatatagccacgcacaaagacaaagtctcccactccttctatttttctcttccaga 120 |||||||||||| | ||||||| | |||||||| ||||||||||||| |||||||| Sbjct: 160 tgcctatatagctcagaacaaagatcatgtctcccatgccttctatttttcccttccaga 219 Query: 121 gcgtatactttggccagcatttgttgttgcaacggctgctgcaatagtttctagccaggc 180 | |||| |||||| |||| |||||||||| ||||||||||||||| |||| ||||| Sbjct: 220 ttctgtactctggccatcattcattgttgcaacagctgctgcaatagttgctagtcaggc 279 Query: 181 aactatttccgcaacatactcaatcatcaagcaagcgcttgcggtgggctgcttccccag 240 |||||| || ||||| || || ||||||||||| ||||| | || ||||||||||| Sbjct: 280 aactatatcgatgacatattcgattatcaagcaagcacttgctctagggtgcttccccag 339 Query: 241 agtgaagatcatccatacttccaagaagtatcttggccagatatacagccccgatattaa 300 ||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 340 agtgagaattatccatacttccaagaagtatctaggccagatatacagtcccgatattaa 399 Query: 301 ttggatcctcctgattctctgtattgccgtcacggctgggttcaagaatcagtcccagat 360 ||||||||| ||| | |||| ||||| ||||| ||||| || || || || |||||| Sbjct: 400 ttggatccttctggtattctgcattgctgtcactgctggatttaaaaaccaaagccagat 459 Query: 361 tgcaaatgcttatggtacagctgtgataatggttatgcttgtgacgacatttctcatgat 420 |||||||| || ||||| || ||||||||||||||||||||||| |||||||||||||| Sbjct: 460 agcaaatgcatacggtactgccgtgataatggttatgcttgtgacaacatttctcatgat 519 Query: 421 ccccataatgctgctggtatggcgc 445 ||| ||||||||| |||| |||||| Sbjct: 520 ccctataatgctgttggtgtggcgc 544
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 234 bits (118), Expect = 2e-58 Identities = 220/254 (86%) Strand = Plus / Minus Query: 124 tatactttggccagcatttgttgttgcaacggctgctgcaatagtttctagccaggcaac 183 |||||||||||||||||||| |||||||| || |||||||||||| |||| ||||| || Sbjct: 22067971 tatactttggccagcatttgccgttgcaacagcagctgcaatagttgctagtcaggccac 22067912 Query: 184 tatttccgcaacatactcaatcatcaagcaagcgcttgcggtgggctgcttccccagagt 243 ||| || |||||||| || || ||||||||||| ||||| | || ||||| ||| |||| Sbjct: 22067911 tatatctgcaacatattcgattatcaagcaagcacttgccctagggtgctttccccgagt 22067852 Query: 244 gaagatcatccatacttccaagaagtatcttggccagatatacagccccgatattaattg 303 |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| || Sbjct: 22067851 gaagatcatccatacttccaagaagtatctcggccagatatacagccctgatattaactg 22067792 Query: 304 gatcctcctgattctctgtattgccgtcacggctgggttcaagaatcagtcccagattgc 363 ||||||| || || |||| || || ||||| || |||||||| || || ||||||||||| Sbjct: 22067791 gatcctcatggttttctgcatagctgtcactgcagggttcaaaaaccaatcccagattgc 22067732 Query: 364 aaatgcttatggta 377 |||||| ||||||| Sbjct: 22067731 aaatgcatatggta 22067718 Score = 93.7 bits (47), Expect = 5e-16 Identities = 65/71 (91%) Strand = Plus / Minus Query: 374 ggtacagctgtgataatggttatgcttgtgacgacatttctcatgatccccataatgctg 433 ||||| |||||||| ||||||||||||||||| |||||||| ||||||||||| |||||| Sbjct: 22067611 ggtactgctgtgatcatggttatgcttgtgacaacatttctgatgatccccatcatgctg 22067552 Query: 434 ctggtatggcg 444 ||||| ||||| Sbjct: 22067551 ctggtgtggcg 22067541 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 2 cagattgctttcacgacggttgtgttcccatgtcttcttttgcaatatactggtcaagct 61 |||||||||||||| ||||||||||||||| |||||| |||||||||||||||| ||| Sbjct: 22068210 cagattgctttcactgtggttgtgttcccatgccttcttctgcaatatactggtcaggct 22068151 Query: 62 gcctatatagc 72 || | |||||| Sbjct: 22068150 gcgtttatagc 22068140
>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0635G10 Length = 146728 Score = 234 bits (118), Expect = 2e-58 Identities = 220/254 (86%) Strand = Plus / Minus Query: 124 tatactttggccagcatttgttgttgcaacggctgctgcaatagtttctagccaggcaac 183 |||||||||||||||||||| |||||||| || |||||||||||| |||| ||||| || Sbjct: 110035 tatactttggccagcatttgccgttgcaacagcagctgcaatagttgctagtcaggccac 109976 Query: 184 tatttccgcaacatactcaatcatcaagcaagcgcttgcggtgggctgcttccccagagt 243 ||| || |||||||| || || ||||||||||| ||||| | || ||||| ||| |||| Sbjct: 109975 tatatctgcaacatattcgattatcaagcaagcacttgccctagggtgctttccccgagt 109916 Query: 244 gaagatcatccatacttccaagaagtatcttggccagatatacagccccgatattaattg 303 |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| || Sbjct: 109915 gaagatcatccatacttccaagaagtatctcggccagatatacagccctgatattaactg 109856 Query: 304 gatcctcctgattctctgtattgccgtcacggctgggttcaagaatcagtcccagattgc 363 ||||||| || || |||| || || ||||| || |||||||| || || ||||||||||| Sbjct: 109855 gatcctcatggttttctgcatagctgtcactgcagggttcaaaaaccaatcccagattgc 109796 Query: 364 aaatgcttatggta 377 |||||| ||||||| Sbjct: 109795 aaatgcatatggta 109782 Score = 93.7 bits (47), Expect = 5e-16 Identities = 65/71 (91%) Strand = Plus / Minus Query: 374 ggtacagctgtgataatggttatgcttgtgacgacatttctcatgatccccataatgctg 433 ||||| |||||||| ||||||||||||||||| |||||||| ||||||||||| |||||| Sbjct: 109675 ggtactgctgtgatcatggttatgcttgtgacaacatttctgatgatccccatcatgctg 109616 Query: 434 ctggtatggcg 444 ||||| ||||| Sbjct: 109615 ctggtgtggcg 109605 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 2 cagattgctttcacgacggttgtgttcccatgtcttcttttgcaatatactggtcaagct 61 |||||||||||||| ||||||||||||||| |||||| |||||||||||||||| ||| Sbjct: 110274 cagattgctttcactgtggttgtgttcccatgccttcttctgcaatatactggtcaggct 110215 Query: 62 gcctatatagc 72 || | |||||| Sbjct: 110214 gcgtttatagc 110204
>ref|NM_102850.2| Arabidopsis thaliana KUP10; potassium ion transporter AT1G31120 (KUP10) mRNA, complete cds Length = 3135 Score = 58.0 bits (29), Expect = 3e-05 Identities = 179/229 (78%) Strand = Plus / Plus Query: 147 ttgcaacggctgctgcaatagtttctagccaggcaactatttccgcaacatactcaatca 206 ||||||| ||||||||||||||| | ||||| || || || |||||||||| ||| | | Sbjct: 1797 ttgcaactgctgctgcaatagttgcaagccaagctacaatatccgcaacattctcgttga 1856 Query: 207 tcaagcaagcgcttgcggtgggctgcttccccagagtgaagatcatccatacttccaaga 266 |||||||||| ||||| || || ||||| ||||| || || | ||||||||| || Sbjct: 1857 tcaagcaagctcttgctcatggatgtttcccgagagttaaagtcgtgcatacttcccgga 1916 Query: 267 agtatcttggccagatatacagccccgatattaattggatcctcctgattctctgtattg 326 | | ||||| ||||| ||| || || || |||||||||||| |||| || || || | Sbjct: 1917 aattccttggtcagatttacgttccagacatcaattggatcctcatgatcctttgcatag 1976 Query: 327 ccgtcacggctgggttcaagaatcagtcccagattgcaaatgcttatgg 375 | ||||| ||||| |||||||| ||| |||||| | |||||||||||| Sbjct: 1977 ctgtcactgctggattcaagaaccagaaccagataggaaatgcttatgg 2025
>gb|AC004793.2|F28K20 Arabidopsis thaliana chromosome 1 BAC F28K20 sequence, complete sequence Length = 76458 Score = 58.0 bits (29), Expect = 3e-05 Identities = 179/229 (78%) Strand = Plus / Minus Query: 147 ttgcaacggctgctgcaatagtttctagccaggcaactatttccgcaacatactcaatca 206 ||||||| ||||||||||||||| | ||||| || || || |||||||||| ||| | | Sbjct: 16778 ttgcaactgctgctgcaatagttgcaagccaagctacaatatccgcaacattctcgttga 16719 Query: 207 tcaagcaagcgcttgcggtgggctgcttccccagagtgaagatcatccatacttccaaga 266 |||||||||| ||||| || || ||||| ||||| || || | ||||||||| || Sbjct: 16718 tcaagcaagctcttgctcatggatgtttcccgagagttaaagtcgtgcatacttcccgga 16659 Query: 267 agtatcttggccagatatacagccccgatattaattggatcctcctgattctctgtattg 326 | | ||||| ||||| ||| || || || |||||||||||| |||| || || || | Sbjct: 16658 aattccttggtcagatttacgttccagacatcaattggatcctcatgatcctttgcatag 16599 Query: 327 ccgtcacggctgggttcaagaatcagtcccagattgcaaatgcttatgg 375 | ||||| ||||| |||||||| ||| |||||| | |||||||||||| Sbjct: 16598 ctgtcactgctggattcaagaaccagaaccagataggaaatgcttatgg 16550
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 392 gttatgcttgtgacgacatttctcatgatccccataatgctgctggtatgg 442 |||||||| || ||||||||||||||| |||| ||||||||| | |||||| Sbjct: 6203790 gttatgctggtcacgacatttctcatggtcccaataatgctgttagtatgg 6203840
>dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1119_C05 Length = 126112 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 392 gttatgcttgtgacgacatttctcatgatccccataatgctgctggtatgg 442 |||||||| || ||||||||||||||| |||| ||||||||| | |||||| Sbjct: 67183 gttatgctggtcacgacatttctcatggtcccaataatgctgttagtatgg 67233
>emb|AJ427981.1|OSA427981 Oryza sativa HAK12 gene for putative potasium transporter, exons 1-9 Length = 5418 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 392 gttatgcttgtgacgacatttctcatgatccccataatgctgctggtatgg 442 |||||||| || ||||||||||||||| |||| ||||||||| | |||||| Sbjct: 3885 gttatgctggtcacgacatttctcatggtcccaataatgctgttagtatgg 3935
>dbj|AK069377.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012J20, full insert sequence Length = 3200 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 392 gttatgcttgtgacgacatttctcatgatccccataatgctgctggtatgg 442 |||||||| || ||||||||||||||| |||| ||||||||| | |||||| Sbjct: 1915 gttatgctggtcacgacatttctcatggtcccaataatgctgttagtatgg 1965
>ref|XM_473875.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2217 Score = 48.1 bits (24), Expect = 0.025 Identities = 237/308 (76%) Strand = Plus / Plus Query: 131 tggccagcatttgttgttgcaacggctgctgcaatagtttctagccaggcaactatttcc 190 |||||||||||||| | ||||| || || ||||||||| | |||||||| || || || Sbjct: 925 tggccagcatttgtcatagcaactgcagcagcaatagttgcaagccaggccaccatatct 984 Query: 191 gcaacatactcaatcatcaagcaagcgcttgcggtgggctgcttccccagagtgaagatc 250 || || ||||| || || |||||||| ||||| | |||||||| ||| | || ||||| Sbjct: 985 gcgacttactcgataataaagcaagctcttgcactaggctgctttccccgtgtaaagata 1044 Query: 251 atccatacttccaagaagtatcttggccagatatacagccccgatattaattggatcctc 310 | || || || ||||| | ||||| ||||| |||| ||| || || |||||| |||| Sbjct: 1045 gtgcacacctcgaagaaattccttgggcagatctacatccctgacatcaattgggtcctt 1104 Query: 311 ctgattctctgtattgccgtcacggctgggttcaagaatcagtcccagattgcaaatgct 370 || ||||| || ||||| || || ||||| |||||||| || ||||| | |||||| Sbjct: 1105 ctaattctttgcattgctgtgactgctggattcaagaaccaaagtcagataggaaatgca 1164 Query: 371 tatggtacagctgtgataatggttatgcttgtgacgacatttctcatgatccccataatg 430 ||||| || || ||| | || |||||||| || || |||||||| ||| | || |||||| Sbjct: 1165 tatggaactgcggtggttatagttatgctagtcacaacatttctgatggtaccaataatg 1224 Query: 431 ctgctggt 438 ||||||| Sbjct: 1225 ttgctggt 1232
>dbj|AK072123.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122K08, full insert sequence Length = 3453 Score = 48.1 bits (24), Expect = 0.025 Identities = 237/308 (76%) Strand = Plus / Plus Query: 131 tggccagcatttgttgttgcaacggctgctgcaatagtttctagccaggcaactatttcc 190 |||||||||||||| | ||||| || || ||||||||| | |||||||| || || || Sbjct: 1952 tggccagcatttgtcatagcaactgcagcagcaatagttgcaagccaggccaccatatct 2011 Query: 191 gcaacatactcaatcatcaagcaagcgcttgcggtgggctgcttccccagagtgaagatc 250 || || ||||| || || |||||||| ||||| | |||||||| ||| | || ||||| Sbjct: 2012 gcgacttactcgataataaagcaagctcttgcactaggctgctttccccgtgtaaagata 2071 Query: 251 atccatacttccaagaagtatcttggccagatatacagccccgatattaattggatcctc 310 | || || || ||||| | ||||| ||||| |||| ||| || || |||||| |||| Sbjct: 2072 gtgcacacctcgaagaaattccttgggcagatctacatccctgacatcaattgggtcctt 2131 Query: 311 ctgattctctgtattgccgtcacggctgggttcaagaatcagtcccagattgcaaatgct 370 || ||||| || ||||| || || ||||| |||||||| || ||||| | |||||| Sbjct: 2132 ctaattctttgcattgctgtgactgctggattcaagaaccaaagtcagataggaaatgca 2191 Query: 371 tatggtacagctgtgataatggttatgcttgtgacgacatttctcatgatccccataatg 430 ||||| || || ||| | || |||||||| || || |||||||| ||| | || |||||| Sbjct: 2192 tatggaactgcggtggttatagttatgctagtcacaacatttctgatggtaccaataatg 2251 Query: 431 ctgctggt 438 ||||||| Sbjct: 2252 ttgctggt 2259
>gb|AC115055.9| Mus musculus chromosome 3, clone RP24-346I12, complete sequence Length = 204367 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 127 actttggccagcatttgttgtt 148 |||||||||||||||||||||| Sbjct: 103057 actttggccagcatttgttgtt 103036
>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17, complete sequence Length = 160484 Score = 44.1 bits (22), Expect = 0.38 Identities = 169/218 (77%) Strand = Plus / Minus Query: 131 tggccagcatttgttgttgcaacggctgctgcaatagtttctagccaggcaactatttcc 190 |||||||||||||| | ||||| || || ||||||||| | |||||||| || || || Sbjct: 146234 tggccagcatttgtcatagcaactgcagcagcaatagttgcaagccaggccaccatatct 146175 Query: 191 gcaacatactcaatcatcaagcaagcgcttgcggtgggctgcttccccagagtgaagatc 250 || || ||||| || || |||||||| ||||| | |||||||| ||| | || ||||| Sbjct: 146174 gcgacttactcgataataaagcaagctcttgcactaggctgctttccccgtgtaaagata 146115 Query: 251 atccatacttccaagaagtatcttggccagatatacagccccgatattaattggatcctc 310 | || || || ||||| | ||||| ||||| |||| ||| || || |||||| |||| Sbjct: 146114 gtgcacacctcgaagaaattccttgggcagatctacatccctgacatcaattgggtcctt 146055 Query: 311 ctgattctctgtattgccgtcacggctgggttcaagaa 348 || ||||| || ||||| || || ||||| |||||||| Sbjct: 146054 ctaattctttgcattgctgtgactgctggattcaagaa 146017
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.38 Identities = 169/218 (77%) Strand = Plus / Minus Query: 131 tggccagcatttgttgttgcaacggctgctgcaatagtttctagccaggcaactatttcc 190 |||||||||||||| | ||||| || || ||||||||| | |||||||| || || || Sbjct: 31164153 tggccagcatttgtcatagcaactgcagcagcaatagttgcaagccaggccaccatatct 31164094 Query: 191 gcaacatactcaatcatcaagcaagcgcttgcggtgggctgcttccccagagtgaagatc 250 || || ||||| || || |||||||| ||||| | |||||||| ||| | || ||||| Sbjct: 31164093 gcgacttactcgataataaagcaagctcttgcactaggctgctttccccgtgtaaagata 31164034 Query: 251 atccatacttccaagaagtatcttggccagatatacagccccgatattaattggatcctc 310 | || || || ||||| | ||||| ||||| |||| ||| || || |||||| |||| Sbjct: 31164033 gtgcacacctcgaagaaattccttgggcagatctacatccctgacatcaattgggtcctt 31163974 Query: 311 ctgattctctgtattgccgtcacggctgggttcaagaa 348 || ||||| || ||||| || || ||||| |||||||| Sbjct: 31163973 ctaattctttgcattgctgtgactgctggattcaagaa 31163936
>dbj|AK174627.1| Ciona intestinalis cDNA, clone:cigd044o11, full insert sequence Length = 803 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 124 tatactttggccagcatttgtt 145 |||||||||||||||||||||| Sbjct: 589 tatactttggccagcatttgtt 610
>emb|AJ427980.1|OSA427980 Oryza sativa HAK11 gene for putative potasium transporter, exons 1-9 Length = 4562 Score = 44.1 bits (22), Expect = 0.38 Identities = 169/218 (77%) Strand = Plus / Plus Query: 131 tggccagcatttgttgttgcaacggctgctgcaatagtttctagccaggcaactatttcc 190 |||||||||||||| | ||||| || || ||||||||| | |||||||| || || || Sbjct: 2360 tggccagcatttgtcatagcaactgcagcagcaatagttgcaagccaggccaccatatct 2419 Query: 191 gcaacatactcaatcatcaagcaagcgcttgcggtgggctgcttccccagagtgaagatc 250 || || ||||| || || |||||||| ||||| | |||||||| ||| | || ||||| Sbjct: 2420 gcgacttactcgataataaagcaagctcttgcactaggctgctttccccgtgtaaagata 2479 Query: 251 atccatacttccaagaagtatcttggccagatatacagccccgatattaattggatcctc 310 | || || || ||||| | ||||| ||||| |||| ||| || || |||||| |||| Sbjct: 2480 gtgcacacctcgaagaaattccttgggcagatctacatccctgacatcaattgggtcctt 2539 Query: 311 ctgattctctgtattgccgtcacggctgggttcaagaa 348 || ||||| || ||||| || || ||||| |||||||| Sbjct: 2540 ctaattctttgcattgctgtgactgctggattcaagaa 2577
>emb|Z99128.1|HS422H11 Human DNA sequence from clone RP3-422H11 on chromosome 6p21.1-22.2 Contains the 3' end of a novel gene, the SRPK1 gene for SFRS protein kinase 1 and two CpG islands, complete sequence Length = 112984 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 32 tgtcttcttttgcaatatact 52 ||||||||||||||||||||| Sbjct: 96455 tgtcttcttttgcaatatact 96435
>emb|AL390248.10| Human DNA sequence from clone RP11-492M23 on chromosome 10 Contains the gene for a novel protein and a ribosomal protein L21 (RPL21)(L21) pseudogene, complete sequence Length = 125798 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 96 actccttctatttttctcttc 116 ||||||||||||||||||||| Sbjct: 8917 actccttctatttttctcttc 8937
>emb|AL356952.18| Human DNA sequence from clone RP11-809M12 on chromosome 10 Contains a novel gene and a CpG island, complete sequence Length = 129950 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 gctgctgcaatagtttctagc 175 ||||||||||||||||||||| Sbjct: 43112 gctgctgcaatagtttctagc 43132
>gb|AC119899.8| Mus musculus chromosome 5, clone RP24-235E5, complete sequence Length = 210751 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 agtatcttggccagatatac 286 |||||||||||||||||||| Sbjct: 75024 agtatcttggccagatatac 75043
>gb|AC105773.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1562_H01, complete sequence Length = 88352 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 cccatgtcttcttttgcaat 47 |||||||||||||||||||| Sbjct: 27340 cccatgtcttcttttgcaat 27359
>gb|DQ114786.1| Schistosoma mansoni CREB-binding protein mRNA, complete cds Length = 7479 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 ttgttgcaacggctgctgcaatag 167 |||||||||| ||||||||||||| Sbjct: 4591 ttgttgcaaccgctgctgcaatag 4568
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 cccatgtcttcttttgcaat 47 |||||||||||||||||||| Sbjct: 18721937 cccatgtcttcttttgcaat 18721956
>gb|AC068492.2| Homo sapiens BAC clone RP11-809C23 from 2, complete sequence Length = 172281 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 tccttctatttttctcttcc 117 |||||||||||||||||||| Sbjct: 164784 tccttctatttttctcttcc 164803
>gb|AC007564.10| Homo sapiens 12 BAC RP11-513P18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 194397 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 ctccttctatttttctcttc 116 |||||||||||||||||||| Sbjct: 174136 ctccttctatttttctcttc 174155
>gb|AC091951.3| Homo sapiens chromosome 5 clone RP11-404K5, complete sequence Length = 160174 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 atactttggccagcatttgt 144 |||||||||||||||||||| Sbjct: 14772 atactttggccagcatttgt 14791
>dbj|AP003126.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-684F2, complete sequence Length = 183583 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 aattggatcctcctgattct 318 |||||||||||||||||||| Sbjct: 179131 aattggatcctcctgattct 179112 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,390,312 Number of Sequences: 3902068 Number of extensions: 4390312 Number of successful extensions: 79931 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79771 Number of HSP's gapped (non-prelim): 157 length of query: 445 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 423 effective length of database: 17,147,199,772 effective search space: 7253265503556 effective search space used: 7253265503556 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)