ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd23l03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4,... 42 1.1
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
3emb|AL663115.11| Mouse DNA sequence from clone RP23-452C23 on ch... 40 4.2
4dbj|AP003281.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
5gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 4.2
6gb|AC011806.1|AC011806 Genomic Sequence For Oryza sativa Clone 1... 40 4.2
7gb|AC005300.10| Homo sapiens chromosome 22 clone p143i13 map 22q... 40 4.2
8gb|AC006946.20| Homo sapiens Chromosome 22q11 Pac Clone p109l3 i... 40 4.2
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
11dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 4.2
12dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
13dbj|AP003826.4| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
14dbj|AP003800.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
15emb|Z79928.1|HS304F4 H.sapiens chromosome 22 CpG island DNA geno... 40 4.2
16dbj|AB070940.1| Streptomyces avermitilis oligomycin biosynthetic... 40 4.2

>emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055C08,
             complete sequence
          Length = 145670

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 148   gcgaggtgaggccgtgaggga 168
             |||||||||||||||||||||
Sbjct: 25791 gcgaggtgaggccgtgaggga 25771



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 148      gcgaggtgaggccgtgaggga 168
                |||||||||||||||||||||
Sbjct: 19243961 gcgaggtgaggccgtgaggga 19243941



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>emb|AL663115.11| Mouse DNA sequence from clone RP23-452C23 on chromosome 11 Contains the
             gene for a novel protein simialr to cell division cycle
             associated 4 Cdca4, a ribosomal protein L15 (Rpl15)
             pseudogene, the 3' end of a novel gene and two CpG
             islands, complete sequence
          Length = 183089

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    gccccctccctccctctaga 76
             ||||||||||||||||||||
Sbjct: 41986 gccccctccctccctctaga 42005



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>dbj|AP003281.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0560B06
          Length = 161720

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 222    ttctccgattcgccgtcccc 241
              ||||||||||||||||||||
Sbjct: 155201 ttctccgattcgccgtcccc 155220



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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 57      gccccctccctccctctagaggtc 80
               |||||||||||||||| |||||||
Sbjct: 2033846 gccccctccctccctcaagaggtc 2033823



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>gb|AC011806.1|AC011806 Genomic Sequence For Oryza sativa Clone 10P20, Lemont Strain, Complete
             Sequence, complete sequence
          Length = 105198

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   ttctccgattcgccgtcccc 241
             ||||||||||||||||||||
Sbjct: 92812 ttctccgattcgccgtcccc 92831



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>gb|AC005300.10| Homo sapiens chromosome 22 clone p143i13 map 22q11, complete sequence
          Length = 101269

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 232   cgccgtccccatcgaatcgccgcc 255
             ||||||||||| ||||||||||||
Sbjct: 62834 cgccgtccccagcgaatcgccgcc 62857



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>gb|AC006946.20| Homo sapiens Chromosome 22q11 Pac Clone p109l3 in CES region, complete
              sequence
          Length = 193159

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 232    cgccgtccccatcgaatcgccgcc 255
              ||||||||||| ||||||||||||
Sbjct: 191205 cgccgtccccagcgaatcgccgcc 191228



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 149     cgaggtgaggccgtgaggga 168
               ||||||||||||||||||||
Sbjct: 4207578 cgaggtgaggccgtgaggga 4207559



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 222      ttctccgattcgccgtcccc 241
                ||||||||||||||||||||
Sbjct: 15139149 ttctccgattcgccgtcccc 15139168



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 37      ctgcggaaggccaccgaatc 56
               ||||||||||||||||||||
Sbjct: 3630057 ctgcggaaggccaccgaatc 3630038



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>dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0043B10
          Length = 167399

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 222    ttctccgattcgccgtcccc 241
              ||||||||||||||||||||
Sbjct: 111115 ttctccgattcgccgtcccc 111134



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>dbj|AP003826.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1361_E02
          Length = 100168

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   cgaggtgaggccgtgaggga 168
             ||||||||||||||||||||
Sbjct: 91200 cgaggtgaggccgtgaggga 91181



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>dbj|AP003800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1014_E09
          Length = 184624

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   cgaggtgaggccgtgaggga 168
             ||||||||||||||||||||
Sbjct: 28632 cgaggtgaggccgtgaggga 28613



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>emb|Z79928.1|HS304F4 H.sapiens chromosome 22 CpG island DNA genomic Mse1 fragment, clone
           304f4,  complete read
          Length = 596

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 232 cgccgtccccatcgaatcgccgcc 255
           ||||||||||| ||||||||||||
Sbjct: 45  cgccgtccccagcgaatcgccgcc 22



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>dbj|AB070940.1| Streptomyces avermitilis oligomycin biosynthetic gene cluster
          Length = 104326

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   ctgcggaaggccaccgaatc 56
            ||||||||||||||||||||
Sbjct: 7748 ctgcggaaggccaccgaatc 7767


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,642,675
Number of Sequences: 3902068
Number of extensions: 2642675
Number of successful extensions: 80314
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80153
Number of HSP's gapped (non-prelim): 161
length of query: 322
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 300
effective length of database: 17,147,199,772
effective search space: 5144159931600
effective search space used: 5144159931600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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