| Clone Name | basd23l03 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055C08, complete sequence Length = 145670 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 gcgaggtgaggccgtgaggga 168 ||||||||||||||||||||| Sbjct: 25791 gcgaggtgaggccgtgaggga 25771
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 gcgaggtgaggccgtgaggga 168 ||||||||||||||||||||| Sbjct: 19243961 gcgaggtgaggccgtgaggga 19243941
>emb|AL663115.11| Mouse DNA sequence from clone RP23-452C23 on chromosome 11 Contains the gene for a novel protein simialr to cell division cycle associated 4 Cdca4, a ribosomal protein L15 (Rpl15) pseudogene, the 3' end of a novel gene and two CpG islands, complete sequence Length = 183089 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 gccccctccctccctctaga 76 |||||||||||||||||||| Sbjct: 41986 gccccctccctccctctaga 42005
>dbj|AP003281.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0560B06 Length = 161720 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 ttctccgattcgccgtcccc 241 |||||||||||||||||||| Sbjct: 155201 ttctccgattcgccgtcccc 155220
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 gccccctccctccctctagaggtc 80 |||||||||||||||| ||||||| Sbjct: 2033846 gccccctccctccctcaagaggtc 2033823
>gb|AC011806.1|AC011806 Genomic Sequence For Oryza sativa Clone 10P20, Lemont Strain, Complete Sequence, complete sequence Length = 105198 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 ttctccgattcgccgtcccc 241 |||||||||||||||||||| Sbjct: 92812 ttctccgattcgccgtcccc 92831
>gb|AC005300.10| Homo sapiens chromosome 22 clone p143i13 map 22q11, complete sequence Length = 101269 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 232 cgccgtccccatcgaatcgccgcc 255 ||||||||||| |||||||||||| Sbjct: 62834 cgccgtccccagcgaatcgccgcc 62857
>gb|AC006946.20| Homo sapiens Chromosome 22q11 Pac Clone p109l3 in CES region, complete sequence Length = 193159 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 232 cgccgtccccatcgaatcgccgcc 255 ||||||||||| |||||||||||| Sbjct: 191205 cgccgtccccagcgaatcgccgcc 191228
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 cgaggtgaggccgtgaggga 168 |||||||||||||||||||| Sbjct: 4207578 cgaggtgaggccgtgaggga 4207559
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 ttctccgattcgccgtcccc 241 |||||||||||||||||||| Sbjct: 15139149 ttctccgattcgccgtcccc 15139168
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ctgcggaaggccaccgaatc 56 |||||||||||||||||||| Sbjct: 3630057 ctgcggaaggccaccgaatc 3630038
>dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0043B10 Length = 167399 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 ttctccgattcgccgtcccc 241 |||||||||||||||||||| Sbjct: 111115 ttctccgattcgccgtcccc 111134
>dbj|AP003826.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1361_E02 Length = 100168 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 cgaggtgaggccgtgaggga 168 |||||||||||||||||||| Sbjct: 91200 cgaggtgaggccgtgaggga 91181
>dbj|AP003800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1014_E09 Length = 184624 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 cgaggtgaggccgtgaggga 168 |||||||||||||||||||| Sbjct: 28632 cgaggtgaggccgtgaggga 28613
>emb|Z79928.1|HS304F4 H.sapiens chromosome 22 CpG island DNA genomic Mse1 fragment, clone 304f4, complete read Length = 596 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 232 cgccgtccccatcgaatcgccgcc 255 ||||||||||| |||||||||||| Sbjct: 45 cgccgtccccagcgaatcgccgcc 22
>dbj|AB070940.1| Streptomyces avermitilis oligomycin biosynthetic gene cluster Length = 104326 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ctgcggaaggccaccgaatc 56 |||||||||||||||||||| Sbjct: 7748 ctgcggaaggccaccgaatc 7767 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,642,675 Number of Sequences: 3902068 Number of extensions: 2642675 Number of successful extensions: 80314 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80153 Number of HSP's gapped (non-prelim): 161 length of query: 322 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 300 effective length of database: 17,147,199,772 effective search space: 5144159931600 effective search space used: 5144159931600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)