Clone Information

BLAST Search Result

Clone Name	basd23j23
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK119708.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	214	2e-52
2	dbj\|AK060981.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	214	2e-52
3	gb\|AY103814.1\| Zea mays PCO099562 mRNA sequence	194	2e-46
4	gb\|AC134924.2\| Oryza sativa (japonica cultivar-group) chromosome...	178	1e-41
5	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	178	1e-41
6	dbj\|AK111295.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	178	1e-41
7	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	178	1e-41
8	gb\|AF467730.1\| Oryza sativa putative dormancy-asociated protein ...	174	2e-40
9	gb\|AC169374.2\| Sorghum bicolor clone SB_BBc0019I06, complete seq...	139	1e-29
10	gb\|AY973621.1\| Manihot esculenta auxin-repressed protein-like pr...	76	1e-10
11	gb\|AY973620.1\| Manihot esculenta auxin-repressed protein-like pr...	76	1e-10
12	gb\|L15194.1\| Malus x domestica unknown mRNA	56	1e-04
13	gb\|AF336307.1\|AF336307 Malus x domestica auxin-repressed protein...	56	1e-04
14	ref\|NM_128942.2\| Arabidopsis thaliana unknown protein AT2G33830 ...	52	0.002
15	ref\|NM_179889.1\| Arabidopsis thaliana unknown protein AT2G33830 ...	52	0.002
16	gb\|AF361846.1\| Arabidopsis thaliana At2g33830/T1B8.13 mRNA, comp...	52	0.002
17	gb\|AY066049.1\| Arabidopsis thaliana At2g33830/T1B8.13 mRNA, comp...	52	0.002
18	gb\|AY085689.1\| Arabidopsis thaliana clone 1711 mRNA, complete se...	52	0.002
19	dbj\|AB050786.1\| Arabidopsis thaliana mRNA for Dormancy-associate...	52	0.002
20	gb\|AY185352.1\| Brassica rapa subsp. pekinensis auxin-repressed p...	48	0.030
21	emb\|AJ867392.1\| Triticum aestivum mRNA for glycosyltransferase (...	44	0.46
22	emb\|CR396593.6\| Zebrafish DNA sequence from clone CH211-194G1 in...	44	0.46
23	ref\|NM_170650.2\| Drosophila melanogaster Myosin heavy chain-like...	44	0.46
24	ref\|NM_169703.1\| Drosophila melanogaster Myosin heavy chain-like...	44	0.46
25	ref\|NM_169701.1\| Drosophila melanogaster Myosin heavy chain-like...	44	0.46
26	ref\|NM_169700.1\| Drosophila melanogaster Myosin heavy chain-like...	44	0.46
27	ref\|NM_169699.1\| Drosophila melanogaster Myosin heavy chain-like...	44	0.46
28	gb\|AY069747.1\| Drosophila melanogaster LP08646 full length cDNA	44	0.46
29	gb\|AY051503.1\| Drosophila melanogaster GH15471 full length cDNA	44	0.46
30	gb\|AC007726.7\|AC007726 Drosophila melanogaster, chromosome 3R, r...	44	0.46
31	emb\|BX936416.11\| Zebrafish DNA sequence from clone CH211-194I16 ...	44	0.46
32	gb\|AE003711.3\| Drosophila melanogaster chromosome 3R, section 49...	44	0.46
33	gb\|BT001428.1\| Drosophila melanogaster GH16009 full insert cDNA	44	0.46
34	gb\|CP000031.1\| Silicibacter pomeroyi DSS-3, complete genome	42	1.8
35	emb\|AL663099.7\| Mouse DNA sequence from clone DN-384L23 on chrom...	42	1.8
36	dbj\|AP007154.1\| Aspergillus oryzae RIB40 genomic DNA, SC001	42	1.8
37	gb\|AF458410.1\|AF458410 Brassica oleracea auxin-repressed protein...	42	1.8
38	gb\|AF315553.1\|AF315553 Homo sapiens PRKY gene, partial sequence,...	42	1.8
39	gb\|CP000116.1\| Thiobacillus denitrificans ATCC 25259, complete g...	42	1.8
40	gb\|AC010104.3\|AC010104 Homo sapiens BAC clone RP11-540C18 from Y...	42	1.8
41	dbj\|AP006618.1\| Nocardia farcinica IFM 10152 DNA, complete genome	42	1.8
42	emb\|AL606750.13\| Mouse DNA sequence from clone RP23-335A19 on ch...	42	1.8
43	gb\|AC132262.2\| Mus musculus chromosome 5 clone RP24-370J24, comp...	40	7.3
44	gb\|AC149224.7\| Mus musculus BAC clone RP23-81D11 from chromosome...	40	7.3
45	gb\|AC010124.6\| Drosophila melanogaster clone BACR06O03, complete...	40	7.3
46	emb\|CR751601.8\| Zebrafish DNA sequence from clone CH211-162E3 in...	40	7.3
47	gb\|AC140411.3\| Mus musculus BAC clone RP24-93J6 from chromosome ...	40	7.3
48	gb\|AC134453.4\| Mus musculus BAC clone RP24-263P23 from chromosom...	40	7.3
49	gb\|AC104101.5\| Mus musculus BAC clone RP24-377D2 from chromosome...	40	7.3
50	gb\|AE004269.1\| Vibrio cholerae O1 biovar eltor str. N16961 chrom...	40	7.3
51	emb\|AL669951.18\| Mouse DNA sequence from clone RP23-94F11 on chr...	40	7.3
52	emb\|BX649501.24\| Zebrafish DNA sequence from clone DKEY-123F20 i...	40	7.3
53	gb\|AE005702.1\| Caulobacter crescentus CB15 section 28 of 359 of ...	40	7.3
54	gb\|AC104166.2\| Homo sapiens chromosome 3 clone RP11-199N21, comp...	40	7.3
55	gb\|DQ396892.1\| Eulemur rubriventer clone 44HDZ119 microsatellite...	40	7.3
56	gb\|AC096922.2\| Homo sapiens chromosome 3 clone RP11-436J20, comp...	40	7.3
57	emb\|BX511085.16\| Zebrafish DNA sequence from clone DKEY-273I10 i...	40	7.3
58	emb\|BX571981.5\| Zebrafish DNA sequence from clone DKEY-31J3 in l...	40	7.3
59	ref\|NM_058322.2\| Caenorhabditis elegans R119.1 (R119.1) mRNA, co...	40	7.3
60	gb\|AC142417.2\| Homo sapiens fosmid clone XXFOS-87237G7 from 2, c...	40	7.3
61	gb\|AF063007.3\| Caenorhabditis elegans cosmid R119, complete sequ...	40	7.3
62	emb\|CT485668.1\| Leptosphaeria maculans : genomic region surround...	40	7.3
63	gb\|AE003685.5\| Drosophila melanogaster chromosome 3R, section 23...	40	7.3
64	gb\|CP000086.1\| Burkholderia thailandensis E264 chromosome I, com...	40	7.3
65	gb\|AC158363.2\| Mus musculus BAC clone RP23-214J3 from chromosome...	40	7.3

>dbj|AK119708.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-E08, full
           insert sequence
          Length = 782

 Score =  214 bits (108), Expect = 2e-52
 Identities = 135/144 (93%)
 Strand = Plus / Plus

                                                                       
Query: 23  cgccgcgcggcggcagcgtgtggcggagcgtcttccaccccgggagcaacctcgccacca 82
           ||||||| ||| ||| ||||||| ||||||| |||||||| |||||||||||||||||||
Sbjct: 299 cgccgcggggcagcaacgtgtggaggagcgtgttccacccggggagcaacctcgccacca 358

                                                                       
Query: 83  agggcctcggcgccaacctcttcgaccgcccccagcccaactcccccaccgtctacgact 142
           || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 359 agagcctcggcgccaacctcttcgaccgcccgcagcccaactcccccaccgtctacgact 418

                                   
Query: 143 ggctttacagcgacgagaccagga 166
           |||| |||||||||||||||||||
Sbjct: 419 ggctgtacagcgacgagaccagga 442

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>dbj|AK060981.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-H08, full
           insert sequence
          Length = 801

 Score =  214 bits (108), Expect = 2e-52
 Identities = 135/144 (93%)
 Strand = Plus / Plus

                                                                       
Query: 23  cgccgcgcggcggcagcgtgtggcggagcgtcttccaccccgggagcaacctcgccacca 82
           ||||||| ||| ||| ||||||| ||||||| |||||||| |||||||||||||||||||
Sbjct: 299 cgccgcggggcagcaacgtgtggaggagcgtgttccacccggggagcaacctcgccacca 358

                                                                       
Query: 83  agggcctcggcgccaacctcttcgaccgcccccagcccaactcccccaccgtctacgact 142
           || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 359 agagcctcggcgccaacctcttcgaccgcccgcagcccaactcccccaccgtctacgact 418

                                   
Query: 143 ggctttacagcgacgagaccagga 166
           |||| |||||||||||||||||||
Sbjct: 419 ggctgtacagcgacgagaccagga 442

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>gb|AY103814.1| Zea mays PCO099562 mRNA sequence
          Length = 1044

 Score =  194 bits (98), Expect = 2e-46
 Identities = 125/134 (93%)
 Strand = Plus / Plus

                                                                       
Query: 33  cggcagcgtgtggcggagcgtcttccaccccgggagcaacctcgccaccaagggcctcgg 92
           ||||| ||||||||| |||||||||||||| ||||||||||| |||||||||||| | ||
Sbjct: 475 cggcaacgtgtggcgcagcgtcttccacccggggagcaacctggccaccaagggcatggg 534

                                                                       
Query: 93  cgccaacctcttcgaccgcccccagcccaactcccccaccgtctacgactggctttacag 152
           |||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct: 535 cgccaacctcttcgaccggccgcagcccaactcccccaccgtctacgactggctctacag 594

                         
Query: 153 cgacgagaccagga 166
           ||||||||||||||
Sbjct: 595 cgacgagaccagga 608

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>gb|AC134924.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0076M06, complete sequence
          Length = 133581

 Score =  178 bits (90), Expect = 1e-41
 Identities = 114/122 (93%)
 Strand = Plus / Minus

                                                                         
Query: 23    cgccgcgcggcggcagcgtgtggcggagcgtcttccaccccgggagcaacctcgccacca 82
             ||||||| ||| ||| ||||||| ||||||| |||||||| |||||||||||||||||||
Sbjct: 55110 cgccgcggggcagcaacgtgtggaggagcgtgttccacccggggagcaacctcgccacca 55051

                                                                         
Query: 83    agggcctcggcgccaacctcttcgaccgcccccagcccaactcccccaccgtctacgact 142
             || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 55050 agagcctcggcgccaacctcttcgaccgcccgcagcccaactcccccaccgtctacgact 54991

               
Query: 143   gg 144
             ||
Sbjct: 54990 gg 54989



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 143   ggctttacagcgacgagaccagga 166
             |||| |||||||||||||||||||
Sbjct: 54729 ggctgtacagcgacgagaccagga 54706

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  178 bits (90), Expect = 1e-41
 Identities = 114/122 (93%)
 Strand = Plus / Minus

                                                                            
Query: 23       cgccgcgcggcggcagcgtgtggcggagcgtcttccaccccgggagcaacctcgccacca 82
                ||||||| ||| ||| ||||||| ||||||| |||||||| |||||||||||||||||||
Sbjct: 26253461 cgccgcggggcagcaacgtgtggaggagcgtgttccacccggggagcaacctcgccacca 26253402

                                                                            
Query: 83       agggcctcggcgccaacctcttcgaccgcccccagcccaactcccccaccgtctacgact 142
                || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 26253401 agagcctcggcgccaacctcttcgaccgcccgcagcccaactcccccaccgtctacgact 26253342

                  
Query: 143      gg 144
                ||
Sbjct: 26253341 gg 26253340



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 143      ggctttacagcgacgagaccagga 166
                |||| |||||||||||||||||||
Sbjct: 26253080 ggctgtacagcgacgagaccagga 26253057

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>dbj|AK111295.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-A09, full
           insert sequence
          Length = 859

 Score =  178 bits (90), Expect = 1e-41
 Identities = 114/122 (93%)
 Strand = Plus / Minus

                                                                       
Query: 23  cgccgcgcggcggcagcgtgtggcggagcgtcttccaccccgggagcaacctcgccacca 82
           ||||||| ||| ||| ||||||| ||||||| |||||||| |||||||||||||||||||
Sbjct: 489 cgccgcggggcagcaacgtgtggaggagcgtgttccacccggggagcaacctcgccacca 430

                                                                       
Query: 83  agggcctcggcgccaacctcttcgaccgcccccagcccaactcccccaccgtctacgact 142
           || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 429 agagcctcggcgccaacctcttcgaccgcccgcagcccaactcccccaccgtctacgact 370

             
Query: 143 gg 144
           ||
Sbjct: 369 gg 368



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 143 ggctttacagcgacgagaccagga 166
           |||| |||||||||||||||||||
Sbjct: 108 ggctgtacagcgacgagaccagga 85

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  178 bits (90), Expect = 1e-41
 Identities = 114/122 (93%)
 Strand = Plus / Minus

                                                                            
Query: 23       cgccgcgcggcggcagcgtgtggcggagcgtcttccaccccgggagcaacctcgccacca 82
                ||||||| ||| ||| ||||||| ||||||| |||||||| |||||||||||||||||||
Sbjct: 26567719 cgccgcggggcagcaacgtgtggaggagcgtgttccacccggggagcaacctcgccacca 26567660

                                                                            
Query: 83       agggcctcggcgccaacctcttcgaccgcccccagcccaactcccccaccgtctacgact 142
                || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 26567659 agagcctcggcgccaacctcttcgaccgcccgcagcccaactcccccaccgtctacgact 26567600

                  
Query: 143      gg 144
                ||
Sbjct: 26567599 gg 26567598



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 143      ggctttacagcgacgagaccagga 166
                |||| |||||||||||||||||||
Sbjct: 26567338 ggctgtacagcgacgagaccagga 26567315

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>gb|AF467730.1| Oryza sativa putative dormancy-asociated protein mRNA, complete cds
          Length = 787

 Score =  174 bits (88), Expect = 2e-40
 Identities = 131/144 (90%), Gaps = 1/144 (0%)
 Strand = Plus / Plus

                                                                       
Query: 23  cgccgcgcggcggcagcgtgtggcggagcgtcttccaccccgggagcaacctcgccacca 82
           ||||||| ||| ||| ||||||| ||||||| |||||||| ||||||||| |||| ||||
Sbjct: 229 cgccgcggggcagcaacgtgtggaggagcgtgttccacccggggagcaacttcgc-acca 287

                                                                       
Query: 83  agggcctcggcgccaacctcttcgaccgcccccagcccaactcccccaccgtctacgact 142
           || || ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 288 agagcttcggcgccaaccttttcgaccgcccccagcccaactcccccacggtctacgact 347

                                   
Query: 143 ggctttacagcgacgagaccagga 166
           |||| |||||||||||||||||||
Sbjct: 348 ggctgtacagcgacgagaccagga 371

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>gb|AC169374.2| Sorghum bicolor clone SB_BBc0019I06, complete sequence
          Length = 129695

 Score =  139 bits (70), Expect = 1e-29
 Identities = 97/106 (91%)
 Strand = Plus / Plus

                                                                         
Query: 39    cgtgtggcggagcgtcttccaccccgggagcaacctcgccaccaagggcctcggcgccaa 98
             ||||||||| ||||| |||||||| ||||||||||| |||||||||||| | || |||||
Sbjct: 13022 cgtgtggcgcagcgtgttccacccggggagcaacctggccaccaagggcatgggtgccaa 13081

                                                           
Query: 99    cctcttcgaccgcccccagcccaactcccccaccgtctacgactgg 144
             ||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 13082 cctcttcgaccgcccgcagccaaactcccccaccgtctacgactgg 13127



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 143   ggctttacagcgacgagaccagga 166
             |||| |||||||||||||||||||
Sbjct: 13917 ggctctacagcgacgagaccagga 13940

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>gb|AY973621.1| Manihot esculenta auxin-repressed protein-like protein ARP2 mRNA,
           partial cds
          Length = 608

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 89/106 (83%)
 Strand = Plus / Plus

                                                                       
Query: 47  ggagcgtcttccaccccgggagcaacctcgccaccaagggcctcggcgccaacctcttcg 106
           ||||||| |||||||| || |||||||| ||||| ||||| ||||| ||  | |||||||
Sbjct: 74  ggagcgttttccaccctggtagcaaccttgccactaagggtctcggtgctcagctcttcg 133

                                                         
Query: 107 accgcccccagcccaactcccccaccgtctacgactggctttacag 152
           ||   || ||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 134 acaagccacagcctaactcccccactgtctatgactggctttacag 179

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>gb|AY973620.1| Manihot esculenta auxin-repressed protein-like protein ARP1 mRNA,
           complete cds
          Length = 743

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 89/106 (83%)
 Strand = Plus / Plus

                                                                       
Query: 47  ggagcgtcttccaccccgggagcaacctcgccaccaagggcctcggcgccaacctcttcg 106
           ||||||| |||||||| || |||||||| ||||| ||||| ||||| ||  | |||||||
Sbjct: 246 ggagcgttttccaccctggtagcaaccttgccactaagggtctcggtgctcagctcttcg 305

                                                         
Query: 107 accgcccccagcccaactcccccaccgtctacgactggctttacag 152
           ||   || ||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 306 acaagccacagcctaactcccccactgtctatgactggctttacag 351

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>gb|L15194.1| Malus x domestica unknown mRNA
          Length = 705

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                               
Query: 115 cagcccaactcccccaccgtctacgactggctttacagcgacgagaccagga 166
           ||||||||||| ||||| |||||||||||||| ||||| |  ||||||||||
Sbjct: 325 cagcccaactctcccactgtctacgactggctctacagtggggagaccagga 376

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>gb|AF336307.1|AF336307 Malus x domestica auxin-repressed protein like-protein mRNA,
           complete cds
          Length = 734

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                               
Query: 115 cagcccaactcccccaccgtctacgactggctttacagcgacgagaccagga 166
           ||||||||||| ||||| |||||||||||||| ||||| |  ||||||||||
Sbjct: 321 cagcccaactctcccactgtctacgactggctctacagtggggagaccagga 372

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>ref|NM_128942.2| Arabidopsis thaliana unknown protein AT2G33830 transcript variant
           AT2G33830.1 mRNA, complete cds
          Length = 618

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 121 aactcccccaccgtctacgactggctttacagcgacga 158
           ||||| |||||||||||||| ||||| |||||||||||
Sbjct: 315 aactctcccaccgtctacgattggctatacagcgacga 352

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>ref|NM_179889.1| Arabidopsis thaliana unknown protein AT2G33830 transcript variant
           AT2G33830.2 mRNA, complete cds
          Length = 626

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 121 aactcccccaccgtctacgactggctttacagcgacga 158
           ||||| |||||||||||||| ||||| |||||||||||
Sbjct: 323 aactctcccaccgtctacgattggctatacagcgacga 360

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>gb|AF361846.1| Arabidopsis thaliana At2g33830/T1B8.13 mRNA, complete cds
          Length = 621

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 121 aactcccccaccgtctacgactggctttacagcgacga 158
           ||||| |||||||||||||| ||||| |||||||||||
Sbjct: 321 aactctcccaccgtctacgattggctatacagcgacga 358

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>gb|AY066049.1| Arabidopsis thaliana At2g33830/T1B8.13 mRNA, complete cds
          Length = 327

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 121 aactcccccaccgtctacgactggctttacagcgacga 158
           ||||| |||||||||||||| ||||| |||||||||||
Sbjct: 268 aactctcccaccgtctacgattggctatacagcgacga 305

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>gb|AY085689.1| Arabidopsis thaliana clone 1711 mRNA, complete sequence
          Length = 597

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 121 aactcccccaccgtctacgactggctttacagcgacga 158
           ||||| |||||||||||||| ||||| |||||||||||
Sbjct: 316 aactctcccaccgtctacgattggctatacagcgacga 353

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>dbj|AB050786.1| Arabidopsis thaliana mRNA for Dormancy-associated protein homolog,
           complete cds
          Length = 621

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 121 aactcccccaccgtctacgactggctttacagcgacga 158
           ||||| |||||||||||||| ||||| |||||||||||
Sbjct: 321 aactctcccaccgtctacgattggctatacagcgacga 358

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>gb|AY185352.1| Brassica rapa subsp. pekinensis auxin-repressed protein mRNA,
           partial cds
          Length = 570

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 127 cccaccgtctacgactggctttacagcgacga 158
           |||||||||||||||||| | |||||||||||
Sbjct: 270 cccaccgtctacgactggttgtacagcgacga 301

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>emb|AJ867392.1| Triticum aestivum mRNA for glycosyltransferase (a1 gene)
          Length = 2384

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 75 cgccaccaagggcctcggcgcc 96
          ||||||||||||||||||||||
Sbjct: 54 cgccaccaagggcctcggcgcc 75

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>emb|CR396593.6| Zebrafish DNA sequence from clone CH211-194G1 in linkage group 5,
             complete sequence
          Length = 197143

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 454   tggtgtggtcttctcaatgttt 475
             ||||||||||||||||||||||
Sbjct: 48485 tggtgtggtcttctcaatgttt 48464

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>ref|NM_170650.2| Drosophila melanogaster Myosin heavy chain-like CG31045-RC,
            transcript variant C (Mhcl), mRNA
          Length = 2928

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 134  tctacgactggctttacagcga 155
            ||||||||||||||||||||||
Sbjct: 2484 tctacgactggctttacagcga 2505

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>ref|NM_169703.1| Drosophila melanogaster Myosin heavy chain-like CG31045-RD,
            transcript variant D (Mhcl), mRNA
          Length = 4004

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 134  tctacgactggctttacagcga 155
            ||||||||||||||||||||||
Sbjct: 3661 tctacgactggctttacagcga 3682

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>ref|NM_169701.1| Drosophila melanogaster Myosin heavy chain-like CG31045-RB,
            transcript variant B (Mhcl), mRNA
          Length = 6384

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 134  tctacgactggctttacagcga 155
            ||||||||||||||||||||||
Sbjct: 6041 tctacgactggctttacagcga 6062

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>ref|NM_169700.1| Drosophila melanogaster Myosin heavy chain-like CG31045-RA,
            transcript variant A (Mhcl), mRNA
          Length = 6201

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 134  tctacgactggctttacagcga 155
            ||||||||||||||||||||||
Sbjct: 5858 tctacgactggctttacagcga 5879

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>ref|NM_169699.1| Drosophila melanogaster Myosin heavy chain-like CG31045-RE,
            transcript variant E (Mhcl), mRNA
          Length = 6706

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 134  tctacgactggctttacagcga 155
            ||||||||||||||||||||||
Sbjct: 6363 tctacgactggctttacagcga 6384

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>gb|AY069747.1| Drosophila melanogaster LP08646 full length cDNA
          Length = 4254

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 134  tctacgactggctttacagcga 155
            ||||||||||||||||||||||
Sbjct: 3661 tctacgactggctttacagcga 3682

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>gb|AY051503.1| Drosophila melanogaster GH15471 full length cDNA
          Length = 6223

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 134  tctacgactggctttacagcga 155
            ||||||||||||||||||||||
Sbjct: 5858 tctacgactggctttacagcga 5879

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>gb|AC007726.7|AC007726 Drosophila melanogaster, chromosome 3R, region 89B-89B, BAC clone
             BACR05C20, complete sequence
          Length = 177278

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 134   tctacgactggctttacagcga 155
             ||||||||||||||||||||||
Sbjct: 99109 tctacgactggctttacagcga 99088

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>emb|BX936416.11| Zebrafish DNA sequence from clone CH211-194I16 in linkage group 18,
              complete sequence
          Length = 214763

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 403    gtgtatgtgtgtactttgtgtg 424
              ||||||||||||||||||||||
Sbjct: 145166 gtgtatgtgtgtactttgtgtg 145187

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>gb|AE003711.3| Drosophila melanogaster chromosome 3R, section 49 of 118 of the complete
              sequence
          Length = 236475

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 134    tctacgactggctttacagcga 155
              ||||||||||||||||||||||
Sbjct: 190583 tctacgactggctttacagcga 190562

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>gb|BT001428.1| Drosophila melanogaster GH16009 full insert cDNA
          Length = 2942

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 134  tctacgactggctttacagcga 155
            ||||||||||||||||||||||
Sbjct: 2484 tctacgactggctttacagcga 2505

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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 19      acgccgccgcgcggcggcagc 39
               |||||||||||||||||||||
Sbjct: 1884683 acgccgccgcgcggcggcagc 1884703

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>emb|AL663099.7| Mouse DNA sequence from clone DN-384L23 on chromosome 3 Contains a
             glyceraldehyde-3-phosphate dehydrogenase (GAPD)
             pseudogene, two novel genes (4930406D18RIK)
             (4930431B09Rik), the 5' end of a novel gene
             (E130019M14RIK) and a CpG island, complete sequence
          Length = 177135

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 394   gagtgatgggtgtatgtgtgtactt 418
             ||||| |||||||||||||||||||
Sbjct: 78157 gagtgttgggtgtatgtgtgtactt 78133

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>dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001
          Length = 2005935

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 230    gacgacgccatgtttgctgct 250
              |||||||||||||||||||||
Sbjct: 901497 gacgacgccatgtttgctgct 901517

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>gb|AF458410.1|AF458410 Brassica oleracea auxin-repressed protein (ARP1) mRNA, complete cds
          Length = 605

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 130 accgtctacgactggctttacagcgacga 158
           |||||||| |||||||| |||||||||||
Sbjct: 303 accgtctatgactggctgtacagcgacga 331

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>gb|AF315553.1|AF315553 Homo sapiens PRKY gene, partial sequence, in clone Y813, complete
              sequence
          Length = 197321

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 454    tggtgtggtcttctcaatgtt 474
              |||||||||||||||||||||
Sbjct: 133451 tggtgtggtcttctcaatgtt 133431

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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 74      tcgccaccaagggcctcggcgccaacctc 102
               |||||||||  ||||||||||||||||||
Sbjct: 2139405 tcgccaccatcggcctcggcgccaacctc 2139433

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>gb|AC010104.3|AC010104 Homo sapiens BAC clone RP11-540C18 from Y, complete sequence
          Length = 110250

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 454   tggtgtggtcttctcaatgtt 474
             |||||||||||||||||||||
Sbjct: 57076 tggtgtggtcttctcaatgtt 57096

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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 80      ccaagggcctcggcgccaacc 100
               |||||||||||||||||||||
Sbjct: 1267192 ccaagggcctcggcgccaacc 1267212

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>emb|AL606750.13| Mouse DNA sequence from clone RP23-335A19 on chromosome 3, complete
              sequence
          Length = 207366

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 394    gagtgatgggtgtatgtgtgtactt 418
              ||||| |||||||||||||||||||
Sbjct: 135783 gagtgttgggtgtatgtgtgtactt 135759

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>gb|AC132262.2| Mus musculus chromosome 5 clone RP24-370J24, complete sequence
          Length = 176466

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    ccaggaccaggagcaaccac 180
              ||||||||||||||||||||
Sbjct: 116702 ccaggaccaggagcaaccac 116683

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>gb|AC149224.7| Mus musculus BAC clone RP23-81D11 from chromosome 19, complete sequence
          Length = 217821

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 406    tatgtgtgtactttgtgtgc 425
              ||||||||||||||||||||
Sbjct: 114398 tatgtgtgtactttgtgtgc 114417

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>gb|AC010124.6| Drosophila melanogaster clone BACR06O03, complete sequence
          Length = 193483

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   ccccagcccaactcccccac 131
             ||||||||||||||||||||
Sbjct: 58854 ccccagcccaactcccccac 58835

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>emb|CR751601.8| Zebrafish DNA sequence from clone CH211-162E3 in linkage group 14,
              complete sequence
          Length = 141943

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 103    ttcgaccgcccccagcccaa 122
              ||||||||||||||||||||
Sbjct: 113140 ttcgaccgcccccagcccaa 113159

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>gb|AC140411.3| Mus musculus BAC clone RP24-93J6 from chromosome 19, complete sequence
          Length = 163978

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 403   gtgtatgtgtgtactttgtg 422
             ||||||||||||||||||||
Sbjct: 33514 gtgtatgtgtgtactttgtg 33495

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>gb|AC134453.4| Mus musculus BAC clone RP24-263P23 from chromosome 15, complete
             sequence
          Length = 131905

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 403   gtgtatgtgtgtactttgtgtgcg 426
             |||||||||||| |||||||||||
Sbjct: 77593 gtgtatgtgtgtcctttgtgtgcg 77570

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>gb|AC104101.5| Mus musculus BAC clone RP24-377D2 from chromosome 5, complete sequence
          Length = 185414

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   ccaggaccaggagcaaccac 180
             ||||||||||||||||||||
Sbjct: 72073 ccaggaccaggagcaaccac 72092

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>gb|AE004269.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 177
            of 251 of the complete chromosome
          Length = 11075

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 357  ttaccctcagtttgctcttt 376
            ||||||||||||||||||||
Sbjct: 5296 ttaccctcagtttgctcttt 5315

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>emb|AL669951.18| Mouse DNA sequence from clone RP23-94F11 on chromosome 11 Contains three
              novel genes, a ribosomal protein L9 (Rpl9) pseudogene, a
              transcription elongation factor A (SII) 3 (Tcea3)
              pseudogene and the 3' end of the Fbxw1b gene for F-box and
              WD-40 domain protein 1B, complete sequence
          Length = 251085

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 405    gtatgtgtgtactttgtgtg 424
              ||||||||||||||||||||
Sbjct: 118447 gtatgtgtgtactttgtgtg 118428

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>emb|BX649501.24| Zebrafish DNA sequence from clone DKEY-123F20 in linkage group 5,
             complete sequence
          Length = 194220

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 452   ggtggtgtggtcttctcaat 471
             ||||||||||||||||||||
Sbjct: 76228 ggtggtgtggtcttctcaat 76209

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>gb|AE005702.1| Caulobacter crescentus CB15 section 28 of 359 of the complete genome
          Length = 5094

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 20   cgccgccgcgcggcggcagc 39
            ||||||||||||||||||||
Sbjct: 4507 cgccgccgcgcggcggcagc 4488

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>gb|AC104166.2| Homo sapiens chromosome 3 clone RP11-199N21, complete sequence
          Length = 171705

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 101   tcttcgaccgcccccagcccaactcccc 128
             ||||| ||||||||||||| ||||||||
Sbjct: 32194 tcttcaaccgcccccagccaaactcccc 32167

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>gb|DQ396892.1| Eulemur rubriventer clone 44HDZ119 microsatellite sequence
          Length = 158

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 399 atgggtgtatgtgtgtactt 418
           ||||||||||||||||||||
Sbjct: 80  atgggtgtatgtgtgtactt 61

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>gb|AC096922.2| Homo sapiens chromosome 3 clone RP11-436J20, complete sequence
          Length = 218652

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 101  tcttcgaccgcccccagcccaactcccc 128
            ||||| ||||||||||||| ||||||||
Sbjct: 1101 tcttcaaccgcccccagccaaactcccc 1128

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>emb|BX511085.16| Zebrafish DNA sequence from clone DKEY-273I10 in linkage group 22,
             complete sequence
          Length = 117103

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 452   ggtggtgtggtcttctcaat 471
             ||||||||||||||||||||
Sbjct: 62361 ggtggtgtggtcttctcaat 62342

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>emb|BX571981.5| Zebrafish DNA sequence from clone DKEY-31J3 in linkage group 14, complete
              sequence
          Length = 258091

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    ttcgaccgcccccagcccaa 122
              ||||||||||||||||||||
Sbjct: 153430 ttcgaccgcccccagcccaa 153411

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>ref|NM_058322.2| Caenorhabditis elegans R119.1 (R119.1) mRNA, complete cds
          Length = 2197

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 91  ggcgccaacctcttcgaccg 110
           ||||||||||||||||||||
Sbjct: 759 ggcgccaacctcttcgaccg 740

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>gb|AC142417.2| Homo sapiens fosmid clone XXFOS-87237G7 from 2, complete sequence
          Length = 19840

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 396   gtgatgggtgtatgtgtgtactttgtgt 423
             |||||| ||||||||||||||| |||||
Sbjct: 19578 gtgatgtgtgtatgtgtgtactgtgtgt 19605

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>gb|AF063007.3| Caenorhabditis elegans cosmid R119, complete sequence
          Length = 38976

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   ggcgccaacctcttcgaccg 110
            ||||||||||||||||||||
Sbjct: 4346 ggcgccaacctcttcgaccg 4365

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>emb|CT485668.1| Leptosphaeria maculans : genomic region surrounding the avirulence gene
             AvrLm1 (AM084345)
          Length = 100390

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   agtgatgggtgtatgtgtgt 414
             ||||||||||||||||||||
Sbjct: 51535 agtgatgggtgtatgtgtgt 51554

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>gb|AE003685.5| Drosophila melanogaster chromosome 3R, section 23 of 118 of the
             complete sequence
          Length = 241476

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   ccccagcccaactcccccac 131
             ||||||||||||||||||||
Sbjct: 56159 ccccagcccaactcccccac 56178

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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 19     acgccgccgcgcggcggcagcgtg 42
              |||||||||||||||||| |||||
Sbjct: 371846 acgccgccgcgcggcggcggcgtg 371823

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>gb|AC158363.2| Mus musculus BAC clone RP23-214J3 from chromosome 15, complete
            sequence
          Length = 228138

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 403  gtgtatgtgtgtactttgtgtgcg 426
            |||||||||||| |||||||||||
Sbjct: 9135 gtgtatgtgtgtcctttgtgtgcg 9112


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,936,990
Number of Sequences: 3902068
Number of extensions: 4936990
Number of successful extensions: 94897
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94407
Number of HSP's gapped (non-prelim): 490
length of query: 536
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 513
effective length of database: 17,143,297,704
effective search space: 8794511722152
effective search space used: 8794511722152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result