ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd23i20 |
|---|---|
| Clone Library Name | barley_pub |
>TPT_FLATR (P49132) Triose phosphate/phosphate translocator, chloroplast| precursor (cTPT) Length = 407 Score = 39.7 bits (91), Expect = 0.005 Identities = 29/112 (25%), Positives = 58/112 (51%), Gaps = 1/112 (0%) Frame = +2 Query: 149 LVSYCYVAVWIFLSFTVIVYNKYILDPKMYNW-PFPISLTMVHMAFCSSXXXXXXXXXXX 325 LV+ + +W FL+ +++N IL+ K+YN+ P+P ++++H+A Sbjct: 103 LVTGFFFFMWYFLN---VIFN--ILNKKIYNYFPYPYFVSVIHLAV----GVVYCLGSWT 153 Query: 326 XDLPSSPAMTTQLYTSSVLPIGALYSLSLWFSNSAYIYLSVSFIQMLKALMP 481 LP + + + ++P+G ++L SN ++ ++VSF +KAL P Sbjct: 154 VGLPKRAPVDSNIL-KLLIPVGFCHALGHVTSNVSFAAVAVSFTHTIKALEP 204
>TPT_SPIOL (P11869) Triose phosphate/phosphate translocator, chloroplast| precursor (cTPT) (p36) (E29) Length = 404 Score = 39.3 bits (90), Expect = 0.006 Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 5/116 (4%) Frame = +2 Query: 149 LVSYCYVAVWIFLSFTVIVYNKYILDPKMYNW-PFPISLTMVHM----AFCSSXXXXXXX 313 LV+ + +W FL+ +++N IL+ K+YN+ P+P ++++H+ +C + Sbjct: 100 LVTGSFFFMWYFLN---VIFN--ILNKKIYNYFPYPYFVSVIHLFVGVVYCLASWSVG-- 152 Query: 314 XXXXXDLPSSPAMTTQLYTSSVLPIGALYSLSLWFSNSAYIYLSVSFIQMLKALMP 481 LP M ++L ++P+ +++ SN ++ ++VSF +KAL P Sbjct: 153 ------LPKRAPMDSKLL-KLLIPVAVCHAIGHVTSNVSFAAVAVSFTHTIKALEP 201
>TPT_FLAPR (P49131) Triose phosphate/phosphate translocator, chloroplast| precursor (cTPT) Length = 408 Score = 37.4 bits (85), Expect = 0.024 Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 1/112 (0%) Frame = +2 Query: 149 LVSYCYVAVWIFLSFTVIVYNKYILDPKMYNW-PFPISLTMVHMAFCSSXXXXXXXXXXX 325 LV+ + +W FL+ +++N IL+ K+YN+ P+P ++ +H+A Sbjct: 104 LVTGFFFFMWYFLN---VIFN--ILNKKIYNYFPYPYFVSAIHLAV----GVVYCLGGWA 154 Query: 326 XDLPSSPAMTTQLYTSSVLPIGALYSLSLWFSNSAYIYLSVSFIQMLKALMP 481 LP M + L ++P+ ++L SN ++ ++VSF +K+L P Sbjct: 155 VGLPKRAPMDSNLL-KLLIPVAFCHALGHVTSNVSFAAVAVSFTHTIKSLEP 205
>TPT_SOLTU (P29463) Triose phosphate/phosphate translocator, chloroplast| precursor (cTPT) (E29) Length = 414 Score = 36.2 bits (82), Expect = 0.054 Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 2/116 (1%) Frame = +2 Query: 140 RKVLVSYCYVAVWIFLSFTVIVYNKYILDPKMYNW-PFPISLTMVHMAFCSSXXXXXXXX 316 + L + + +W FL+ +++N IL+ K+YN+ P+P ++++H+A Sbjct: 107 KATLTTGFFFFMWYFLN---VIFN--ILNKKIYNYFPYPYFVSVIHLAV----GVVYCLV 157 Query: 317 XXXXDLPS-SPAMTTQLYTSSVLPIGALYSLSLWFSNSAYIYLSVSFIQMLKALMP 481 LP +P +TQL + P+ ++L SN ++ + VSF +KAL P Sbjct: 158 SWGVGLPKRAPIDSTQL--KLLTPVAFCHALGHVTSNVSFAAVRVSFTHTVKALEP 211
>TPT1_BRAOB (P52177) Triose phosphate/phosphate translocator, chloroplast| precursor (cTPT) Length = 407 Score = 36.2 bits (82), Expect = 0.054 Identities = 27/116 (23%), Positives = 58/116 (50%), Gaps = 5/116 (4%) Frame = +2 Query: 149 LVSYCYVAVWIFLSFTVIVYNKYILDPKMYNW-PFPISLTMVHM----AFCSSXXXXXXX 313 LV+ + +W FL+ +++N IL+ K+YN+ P+P ++++H+ +C Sbjct: 103 LVTGILLLMWYFLN---VIFN--ILNKKIYNYFPYPYFVSVIHLFVGVVYC--------L 149 Query: 314 XXXXXDLPSSPAMTTQLYTSSVLPIGALYSLSLWFSNSAYIYLSVSFIQMLKALMP 481 LP + + + ++P+ +++ SN ++ ++VSF +KAL P Sbjct: 150 VSWSVGLPKRAPVNSDIL-KVLIPVAVCHAIGHVTSNVSFAAVAVSFTHTIKALEP 204
>TPT_PEA (P21727) Triose phosphate/phosphate translocator, chloroplast| precursor (cTPT) (p36) (E30) Length = 402 Score = 35.4 bits (80), Expect = 0.092 Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 1/103 (0%) Frame = +2 Query: 176 WIFLSFTVIVYNKYILDPKMYNW-PFPISLTMVHMAFCSSXXXXXXXXXXXXDLPSSPAM 352 W FL+ +++N IL+ K+YN+ P+P ++++H+A LP + Sbjct: 107 WYFLN---VIFN--ILNKKIYNYFPYPYFVSVIHLAV----GVVYCLVSWTVGLPKRAPI 157 Query: 353 TTQLYTSSVLPIGALYSLSLWFSNSAYIYLSVSFIQMLKALMP 481 L ++P+ ++L SN ++ ++VSF +KAL P Sbjct: 158 DGNLL-KLLIPVAVCHALGHVTSNVSFAAVAVSFTHTVKALEP 199
>TPT_MAIZE (P49133) Triose phosphate/phosphate translocator, chloroplast| precursor (cTPT) Length = 409 Score = 34.7 bits (78), Expect = 0.16 Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 1/112 (0%) Frame = +2 Query: 149 LVSYCYVAVWIFLSFTVIVYNKYILDPKMYNW-PFPISLTMVHMAFCSSXXXXXXXXXXX 325 LV+ + +W FL+ +++N IL+ K+YN+ P+P ++++H+ Sbjct: 106 LVTGFFFFMWYFLN---VIFN--ILNKKIYNYFPYPYFVSLIHLVVGVVYCLISWSVGLP 160 Query: 326 XDLPSSPAMTTQLYTSSVLPIGALYSLSLWFSNSAYIYLSVSFIQMLKALMP 481 P + + L+ P+ + + SN ++ ++VSF +KAL P Sbjct: 161 KRAPINGTLLKLLF-----PVALCHGIGHITSNVSFAAVAVSFAHTIKALEP 207
>FUCT1_HUMAN (Q96A29) GDP-fucose transporter 1 (Solute carrier family 35 member| C1) Length = 364 Score = 34.7 bits (78), Expect = 0.16 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Frame = +2 Query: 134 VLRKVLVSYCYVAVWIFLSFTVIVYNKYILDPKMYNWPFPISLT----MVHMAFCSSXXX 301 +LR + ++ W+ S +++ NKY+LD PI +T +V C Sbjct: 35 LLRALQIALVVSLYWV-TSISMVFLNKYLLDSPSLRLDTPIFVTFYQCLVTTLLCKGLSA 93 Query: 302 XXXXXXXXXDLPSSPAMTTQLYTS-SVLPIGALYSLSLWFSNSAYIYLSVSFIQMLKALM 478 D PS + L + SVLP+ ++ + F+N Y+ V+F + ++L Sbjct: 94 LAACCPGAVDFPS---LRLDLRVARSVLPLSVVFIGMITFNNLCLKYVGVAFYNVGRSLT 150 Query: 479 PV 484 V Sbjct: 151 TV 152
>TPT2_BRAOB (P52178) Triose phosphate/phosphate translocator, non-green| plastid, chloroplast precursor (CTPT) Length = 402 Score = 34.7 bits (78), Expect = 0.16 Identities = 29/125 (23%), Positives = 55/125 (44%) Frame = +2 Query: 137 LRKVLVSYCYVAVWIFLSFTVIVYNKYILDPKMYNWPFPISLTMVHMAFCSSXXXXXXXX 316 + KVL A+W + +YNK +L P+++T+V A S Sbjct: 96 MTKVLELGLLFAMWYLFNIYFNIYNKQVLKALHA----PMTVTLVQFAVGS----VLITF 147 Query: 317 XXXXDLPSSPAMTTQLYTSSVLPIGALYSLSLWFSNSAYIYLSVSFIQMLKALMPVAVYS 496 +L P ++ +++LP+ +++L F+N + +SVSF +KA+ P Sbjct: 148 MWALNLYKRPKISAA-QLAAILPLAVVHTLGNLFTNMSLGKVSVSFTHTIKAMEPFFSVV 206 Query: 497 IGVLF 511 + +F Sbjct: 207 LSAMF 211
>YMD8_YEAST (Q03697) Hypothetical 49.6 kDa protein in CAT2-AMD1 intergenic| region Length = 442 Score = 33.1 bits (74), Expect = 0.46 Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 4/124 (3%) Frame = +2 Query: 152 VSYCYVAVWIFLSFTVIVYNKYILDPK-MYNWPFPISLTMVHMA---FCSSXXXXXXXXX 319 V +V W F S + +YN+++ DPK +P+ +T H A S Sbjct: 5 VFLAFVFGWYFCSIALSIYNRWMFDPKDGLGIGYPVLVTTFHQATLWLLSGIYIKLRHKP 64 Query: 320 XXXDLPSSPAMTTQLYTSSVLPIGALYSLSLWFSNSAYIYLSVSFIQMLKALMPVAVYSI 499 L + + +LP + + SN ++ Y+ ++ ++K+ V Sbjct: 65 VKNVLRKNNGFNWSFFLKFLLPTAVASAGDIGLSNVSFQYVPLTIYTIIKSSSIAFVLLF 124 Query: 500 GVLF 511 G +F Sbjct: 125 GCIF 128
>FUCT1_DROME (Q9VHT4) Probable GDP-fucose transporter| Length = 337 Score = 31.2 bits (69), Expect = 1.7 Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 4/121 (3%) Frame = +2 Query: 134 VLRKVLVSYCYVAVWIFLSFTVIVYNKYILDPKMYNWPFPISLT----MVHMAFCSSXXX 301 ++ K L + V+++ S + NK++L N P+ ++ +V C Sbjct: 11 LVNKYLKIFFVVSLYWCTSILTVFVNKHLLSSDTVNLGAPLFMSWFQCVVSTVICFVASR 70 Query: 302 XXXXXXXXXDLPSSPAMTTQLYTSSVLPIGALYSLSLWFSNSAYIYLSVSFIQMLKALMP 481 P + + +LP+ LY+L + +N + Y++V+F + ++L Sbjct: 71 LSRKYPSVFTFPEGNPLDIDTFRK-ILPLSVLYTLMIGANNLSLSYVTVAFYYIGRSLTT 129 Query: 482 V 484 V Sbjct: 130 V 130
>YDB1_SCHPO (Q10354) Hypothetical protein C22E12.01 in chromosome I| Length = 374 Score = 31.2 bits (69), Expect = 1.7 Identities = 24/129 (18%), Positives = 56/129 (43%), Gaps = 4/129 (3%) Frame = +2 Query: 137 LRKVLVSYCYVAVWIFLSFTVIVYNKYILDPKMYNWPFPISLT----MVHMAFCSSXXXX 304 + +V++ V W F S + + NK+I ++ FP+ L+ +V M F + Sbjct: 47 ITRVVIIVLIVLAWYFFSLLLSMMNKWIFSESKMDFQFPLFLSSCQMLVQMGF--AKLTI 104 Query: 305 XXXXXXXXDLPSSPAMTTQLYTSSVLPIGALYSLSLWFSNSAYIYLSVSFIQMLKALMPV 484 + + + Y + + + + L + SN++ +++SF M ++ + + Sbjct: 105 LAFPRYQPNKKDNFSWLEYFYRAGICAL--VTGLDIGLSNASLETITLSFYTMCRSSILI 162 Query: 485 AVYSIGVLF 511 V+ V+F Sbjct: 163 FVFFFSVIF 171
>CHS1_SCHPO (P30597) Chitin synthase 1 (EC 2.4.1.16) (Chitin-UDP| acetyl-glucosaminyl transferase 1) Length = 859 Score = 30.4 bits (67), Expect = 3.0 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 6/103 (5%) Frame = +2 Query: 167 VAVWIFLSFTVIVY-----NKYILDPKMY-NWPFPISLTMVHMAFCSSXXXXXXXXXXXX 328 +A+WI+ S V + N+ P Y + S+ M ++ FCS Sbjct: 584 IAIWIYASLLVTCFVLALGNRPHGSPNFYLSMVIMYSILMGYLLFCSGWIAYRAIS---- 639 Query: 329 DLPSSPAMTTQLYTSSVLPIGALYSLSLWFSNSAYIYLSVSFI 457 D + + T+ YTS++L ++ + S++ +YL VS I Sbjct: 640 DAIHNASSTSSSYTSALLNSNVFINIVISLSSTYGMYLVVSII 682
>GPT2_ARATH (Q94B38) Glucose-6-phosphate/phosphate translocator 2, chloroplast| precursor Length = 388 Score = 30.4 bits (67), Expect = 3.0 Identities = 23/106 (21%), Positives = 41/106 (38%) Frame = +2 Query: 164 YVAVWIFLSFTVIVYNKYILDPKMYNWPFPISLTMVHMAFCSSXXXXXXXXXXXXDLPSS 343 Y A W L+ +YNK +L+ Y W LT C S D P Sbjct: 100 YFATWWALNVVFNIYNKKVLNAFPYPW-----LTSTLSLACGSLMMLVSWATRIADAPK- 153 Query: 344 PAMTTQLYTSSVLPIGALYSLSLWFSNSAYIYLSVSFIQMLKALMP 481 T + ++ P+ +++ + + ++VSF ++K+ P Sbjct: 154 ---TDLEFWKTLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEP 196
>FUCT1_CAEEL (Q968A5) GDP-fucose transporter| Length = 363 Score = 29.6 bits (65), Expect = 5.0 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 4/109 (3%) Frame = +2 Query: 170 AVWIFLSFTVIVYNKYILDPKMYNWPFPIS----LTMVHMAFCSSXXXXXXXXXXXXDLP 337 A W+F S ++ NKY+L + P I+ L V + S +P Sbjct: 36 AYWVF-SIGLVFLNKYLLSSVQLDAPLFITWYQCLVTVFLCLFLSKTSKAYGLFKFPSMP 94 Query: 338 SSPAMTTQLYTSSVLPIGALYSLSLWFSNSAYIYLSVSFIQMLKALMPV 484 ++ + VLP+ ++ + F+N Y+ VSF + ++L V Sbjct: 95 IDAKISRE-----VLPLSVVFVAMISFNNLCLKYVGVSFYYVGRSLTTV 138
>EYA4_FUGRU (Q9YHA1) Eyes absent homolog 4 (EC 3.1.3.48) (Fragment)| Length = 119 Score = 29.6 bits (65), Expect = 5.0 Identities = 16/40 (40%), Positives = 25/40 (62%) Frame = +2 Query: 392 ALYSLSLWFSNSAYIYLSVSFIQMLKALMPVAVYSIGVLF 511 AL SLS+ S S + + V+ Q++ AL V +YS+G +F Sbjct: 51 ALKSLSIISSRSNCVNVLVTTTQLIPALAKVLLYSLGAVF 90
>HIS5_BIFLO (Q8G4S6) Imidazole glycerol phosphate synthase subunit hisH (EC| 2.4.2.-) (IGP synthase glutamine amidotransferase subunit) (IGP synthase subunit hisH) (ImGP synthase subunit hisH) (IGPS subunit hisH) Length = 215 Score = 29.3 bits (64), Expect = 6.6 Identities = 18/40 (45%), Positives = 22/40 (55%) Frame = -2 Query: 166 VAVGDEHLAEHRLRHGPLAAGLLRHGSGGAAGGSVIRLRA 47 V VG++ + EH L HG AAG+ G GGSV L A Sbjct: 80 VCVGEQIMFEHGLEHGAHAAGI------GLIGGSVNLLDA 113
>SMS1_CHICK (Q7T3T4) Phosphatidylcholine:ceramide cholinephosphotransferase 1| (EC 2.7.-.-) (Sphingomyelin synthase 1) (MOB protein) Length = 417 Score = 28.9 bits (63), Expect = 8.6 Identities = 12/43 (27%), Positives = 21/43 (48%) Frame = +2 Query: 125 SESVLRKVLVSYCYVAVWIFLSFTVIVYNKYILDPKMYNWPFP 253 ++ VL++ + VW + F N + P+ Y+WPFP Sbjct: 356 NQQVLKEASQTNLLARVWWYKPFQYFEKNVQGIVPRSYHWPFP 398 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.128 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,656,464 Number of Sequences: 219361 Number of extensions: 437990 Number of successful extensions: 1333 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 1280 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1322 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3812186532 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
