ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd23h13 |
|---|---|
| Clone Library Name | barley_pub |
>MPRF_STAHJ (Q4L667) Probable lysylphosphatidylglycerol synthetase (LPG| synthetase) (Multiple peptide resistance factor) Length = 840 Score = 33.5 bits (75), Expect = 0.32 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 2/89 (2%) Frame = +2 Query: 71 RGTVLEIVLAVRFFIYQYGLVYHLNITKHTKSVLVYCLSWVVIFFILLVM--KAVSVGRR 244 RG + A+ F + L++ I + +L LSW+++ FILL++ + V +R Sbjct: 388 RGVFKQSRRAILFVMISLVLIFSATIYTYASLIL---LSWILLIFILLILAYRRSKVMKR 444 Query: 245 KFSAEFQLVFRLLKGLIFIVFISTIVILI 331 F LK LIF + +S +V+ + Sbjct: 445 PFR---------LKRLIFTIILSMLVLYV 464
>Y268_RICPR (Q9ZDQ7) Hypothetical protein RP268| Length = 215 Score = 32.3 bits (72), Expect = 0.71 Identities = 14/47 (29%), Positives = 28/47 (59%) Frame = +2 Query: 182 LSWVVIFFILLVMKAVSVGRRKFSAEFQLVFRLLKGLIFIVFISTIV 322 + ++VIFF+ ++ V + K +F L+F ++ LI ++ STI+ Sbjct: 22 IKYIVIFFLFYIISTVLINSEKDINKFGLIFSVICLLISLISFSTII 68
>Y069_CHLTR (O84072) Probable metal transport system membrane protein CT_069| Length = 451 Score = 31.2 bits (69), Expect = 1.6 Identities = 20/70 (28%), Positives = 41/70 (58%) Frame = +2 Query: 116 YQYGLVYHLNITKHTKSVLVYCLSWVVIFFILLVMKAVSVGRRKFSAEFQLVFRLLKGLI 295 Y YG L T+ +++++CLS VV+++ + +V++ R+F+ L R + L+ Sbjct: 134 YLYGQAATLGYTEAKLALIIFCLSAVVLWWWYRQI-SVAIFDREFAYSCGLRTRTAE-LV 191 Query: 296 FIVFISTIVI 325 +VFIS +++ Sbjct: 192 VLVFISLVIV 201
>POTB_SALTY (P0A2J7) Spermidine/putrescine transport system permease protein| potB Length = 287 Score = 30.4 bits (67), Expect = 2.7 Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 8/107 (7%) Frame = +2 Query: 143 NITKHTKSVLVYCLSWVVIFFIL--LVMKAVSVGRRKFSAEFQLVF------RLLKGLIF 298 N +K V+V + W+V+F L L++ S R ++ ++VF RLL L F Sbjct: 3 NTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDASFVKMVFTLDNYARLLDPLYF 62 Query: 299 IVFISTIVILIVIPHMTIQDIFVCILAFMPTGWGLLLVAQALKPAIM 439 V + ++ +M + C++ P W L + + ++P ++ Sbjct: 63 EVLLHSL-------NMALIATLSCLVLGYPFAWFLAKLPEKIRPLLL 102
>POTB_SALTI (P0A2J8) Spermidine/putrescine transport system permease protein| potB Length = 287 Score = 30.4 bits (67), Expect = 2.7 Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 8/107 (7%) Frame = +2 Query: 143 NITKHTKSVLVYCLSWVVIFFIL--LVMKAVSVGRRKFSAEFQLVF------RLLKGLIF 298 N +K V+V + W+V+F L L++ S R ++ ++VF RLL L F Sbjct: 3 NTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDASFVKMVFTLDNYARLLDPLYF 62 Query: 299 IVFISTIVILIVIPHMTIQDIFVCILAFMPTGWGLLLVAQALKPAIM 439 V + ++ +M + C++ P W L + + ++P ++ Sbjct: 63 EVLLHSL-------NMALIATLSCLVLGYPFAWFLAKLPEKIRPLLL 102
>GLYA2_BURPS (Q63MV1) Serine hydroxymethyltransferase 2 (EC 2.1.2.1) (Serine| methylase 2) (SHMT 2) Length = 424 Score = 30.4 bits (67), Expect = 2.7 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -1 Query: 495 MMISYPRARARIDPHSPTLMIAGFSA 418 M+I Y + A H P+L+IAGFSA Sbjct: 156 MLIDYDQVEALAQQHKPSLIIAGFSA 181
>GLYA2_BURP1 (Q3JGP5) Serine hydroxymethyltransferase 2 (EC 2.1.2.1) (Serine| methylase 2) (SHMT 2) Length = 424 Score = 30.4 bits (67), Expect = 2.7 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -1 Query: 495 MMISYPRARARIDPHSPTLMIAGFSA 418 M+I Y + A H P+L+IAGFSA Sbjct: 156 MLIDYDQVEALAQQHKPSLIIAGFSA 181
>CYB_TRYBO (Q33568) Cytochrome b| Length = 372 Score = 30.0 bits (66), Expect = 3.5 Identities = 24/85 (28%), Positives = 43/85 (50%) Frame = +2 Query: 122 YGLVYHLNITKHTKSVLVYCLSWVVIFFILLVMKAVSVGRRKFSAEFQLVFRLLKGLIFI 301 YGL ++L + + ++ CLSW FF ++ + EF L F + + I Sbjct: 30 YGLGFNLGVMIALQILVGICLSW---FFFRCIIPQNWIFTLLIHLEFDLGFIIRS--LHI 84 Query: 302 VFISTIVILIVIPHMTIQDIFVCIL 376 +F S + L+ I H+ I+ IF+C++ Sbjct: 85 IFTSLLYFLLYI-HI-IKVIFLCLI 107
>GLYA2_RALEJ (Q46RR4) Serine hydroxymethyltransferase 2 (EC 2.1.2.1) (Serine| methylase 2) (SHMT 2) Length = 424 Score = 30.0 bits (66), Expect = 3.5 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -1 Query: 495 MMISYPRARARIDPHSPTLMIAGFSA 418 M+I Y + A H P+L+IAGFSA Sbjct: 156 MLIDYDQVEALAKEHKPSLIIAGFSA 181
>CNR1A_FUGRU (Q98894) Cannabinoid receptor type 1A| Length = 468 Score = 30.0 bits (66), Expect = 3.5 Identities = 18/80 (22%), Positives = 43/80 (53%), Gaps = 2/80 (2%) Frame = +2 Query: 104 RFFIYQYGLVYHLNITKHTKSVLVYCLSWVVIFFILLVMKAVSVGRRKFSAEFQLVFRLL 283 R+ L Y +T+ TK+V+ +C+ W I I+ V+ + ++ ++ +F L+ Sbjct: 213 RYISIHRPLAYRRIVTR-TKAVIAFCMMW-TISIIIAVLPLLGWNCKRLNSVCSDIFPLI 270 Query: 284 --KGLIFIVFISTIVILIVI 337 L+F + ++++++L +I Sbjct: 271 DENYLMFWIGVTSVLVLFII 290
>Y1984_CAUCR (Q9A6U9) Hypothetical UPF0169 lipoprotein CC1984 precursor| Length = 305 Score = 30.0 bits (66), Expect = 3.5 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = -3 Query: 145 VEMVNEPILVDEEAHGKHYLKNGATLPGV 59 ++MVN+ + E A G+ YLKNG TL + Sbjct: 166 IDMVNDQLAGKEMAIGRWYLKNGQTLAAI 194
>GLYA2_BURMA (Q62DI5) Serine hydroxymethyltransferase 2 (EC 2.1.2.1) (Serine| methylase 2) (SHMT 2) Length = 424 Score = 29.6 bits (65), Expect = 4.6 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -1 Query: 495 MMISYPRARARIDPHSPTLMIAGFSA 418 M++ Y + A H P+L+IAGFSA Sbjct: 156 MLLDYDQVEALAQQHKPSLIIAGFSA 181
>GLYA1_BURS3 (Q39A26) Serine hydroxymethyltransferase 1 (EC 2.1.2.1) (Serine| methylase 1) (SHMT 1) Length = 424 Score = 29.6 bits (65), Expect = 4.6 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -1 Query: 495 MMISYPRARARIDPHSPTLMIAGFSA 418 M+I Y + A H P L+IAGFSA Sbjct: 156 MLIDYDQVEALAHEHKPNLIIAGFSA 181
>CNR1_TARGR (Q9PUI7) Cannabinoid receptor 1 (CB1) (CB-R)| Length = 473 Score = 29.6 bits (65), Expect = 4.6 Identities = 19/80 (23%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Frame = +2 Query: 104 RFFIYQYGLVYHLNITKHTKSVLVYCLSWVVIFFILLVMKAVSVGRRKFSAEFQLVFRLL 283 R+ L Y +T+ TK+V+ +C+ W I I+ V+ + +K + +F L+ Sbjct: 216 RYISIHRPLAYKRIVTR-TKAVIAFCVMW-TIAIIIAVLPLLGWNCKKLKSVCSDIFPLI 273 Query: 284 --KGLIFIVFISTIVILIVI 337 L+F + +++I++L ++ Sbjct: 274 DENYLMFWIGVTSILLLFIV 293
>MPRF_STAES (Q8CPC0) Probable lysylphosphatidylglycerol synthetase (LPG| synthetase) (Multiple peptide resistance factor) Length = 840 Score = 28.9 bits (63), Expect = 7.8 Identities = 15/48 (31%), Positives = 28/48 (58%) Frame = +2 Query: 182 LSWVVIFFILLVMKAVSVGRRKFSAEFQLVFRLLKGLIFIVFISTIVI 325 LSW++I F+LL++ K F+ + +L IFI++++ I+I Sbjct: 422 LSWLIIIFVLLILAYQRAQVLKRPLRFKKLAVMLLLSIFILYLNHILI 469
>MPRF_STAEQ (Q5HPI1) Probable lysylphosphatidylglycerol synthetase (LPG| synthetase) (Multiple peptide resistance factor) Length = 840 Score = 28.9 bits (63), Expect = 7.8 Identities = 15/48 (31%), Positives = 28/48 (58%) Frame = +2 Query: 182 LSWVVIFFILLVMKAVSVGRRKFSAEFQLVFRLLKGLIFIVFISTIVI 325 LSW++I F+LL++ K F+ + +L IFI++++ I+I Sbjct: 422 LSWLIIIFVLLILAYQRAQVLKRPLRFKKLAFMLLLSIFILYLNHILI 469
>CI037_HUMAN (Q9H2J1) Protein C9orf37| Length = 206 Score = 28.9 bits (63), Expect = 7.8 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 1/85 (1%) Frame = +1 Query: 52 PEILREAWHRS*D-SACRALLHLPVWARLPSQHNQTHQERPGLLLVMGCHLLHIAGDEGC 228 P L+E W+ + + S+ + L L +R SQH H PG GC E C Sbjct: 56 PFALKENWNLNPEPSSPPSPLFLEAPSRQASQH---HGASPGAGTSAGCPFEKCCSTEPC 112 Query: 229 VGRSAEIQRGVPARVPAAQGADLHR 303 + ++ RG A + A G+ R Sbjct: 113 LSGLGDVGRGEAASLRARPGSGASR 137
>T232_BACTB (Q99335) Transposase for insertion sequence element IS232| Length = 431 Score = 28.9 bits (63), Expect = 7.8 Identities = 15/43 (34%), Positives = 27/43 (62%) Frame = +2 Query: 47 EPLKYSGKRGTVLEIVLAVRFFIYQYGLVYHLNITKHTKSVLV 175 E +++ K G ++ + +AV Y V+HLNI+K ++SVL+ Sbjct: 154 ESIRFETKSGEIVYVNVAVLLLSYSRFKVFHLNISK-SQSVLM 195
>BIOX_BACSH (P22821) Protein bioX| Length = 166 Score = 28.9 bits (63), Expect = 7.8 Identities = 15/53 (28%), Positives = 30/53 (56%) Frame = +2 Query: 176 YCLSWVVIFFILLVMKAVSVGRRKFSAEFQLVFRLLKGLIFIVFISTIVILIV 334 Y L+ ++ IL ++ S+ + E ++FRL GLI ++ ++I +L+V Sbjct: 55 YFLAGIIASLILFLLGIHSI----LNVEISIIFRLTVGLIIVLLGTSIPVLVV 103
>RM03_HUMAN (P09001) Mitochondrial 39S ribosomal protein L3 (L3mt) (MRP-L3)| Length = 348 Score = 28.9 bits (63), Expect = 7.8 Identities = 15/48 (31%), Positives = 22/48 (45%) Frame = +1 Query: 115 LPVWARLPSQHNQTHQERPGLLLVMGCHLLHIAGDEGCVGRSAEIQRG 258 +P+W + +H T LL V CH+L E C G+ A + G Sbjct: 107 MPLWTKDGQKHVVT------LLQVQDCHVLKYTSKENCNGKMATLSVG 148
>P69_MYCGE (P47533) Transport system permease protein p69| Length = 543 Score = 28.9 bits (63), Expect = 7.8 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 12/66 (18%) Frame = +2 Query: 182 LSWVVIFFILLVMKAVSVGRRKFSAEFQ------------LVFRLLKGLIFIVFISTIVI 325 +S VVIF IL + ++ +++FS F+ L+FRLL L F+ +TI++ Sbjct: 357 ISLVVIFSILFGFISCNLFKKRFSISFKILLLFVRVVPSILLFRLLDPL-FLEAKTTIIL 415 Query: 326 LIVIPH 343 +++I H Sbjct: 416 VLLINH 421 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,289,892 Number of Sequences: 219361 Number of extensions: 1208028 Number of successful extensions: 4740 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 4597 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4735 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
