ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd23h04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP005930.3| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
2dbj|AK121119.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 2e-13
3dbj|AK068222.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 2e-13
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
6dbj|AP003073.2| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
7gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 54 5e-04
8emb|AL928778.4|CNS08CC8 Oryza sativa chromosome 12, . BAC OSJNBb... 54 5e-04
9emb|BX247948.4| Zebrafish DNA sequence from clone DKEY-34E4 in l... 48 0.033
10emb|BX248103.7| Zebrafish DNA sequence from clone CH211-226C13 i... 48 0.033
11emb|AL929590.15| Zebrafish DNA sequence from clone DKEY-46K8 in ... 48 0.033
12dbj|BS000007.1| Pan troglodytes chromosome 22 clone:PTB-005B20, ... 44 0.52
13emb|BX649502.4| Zebrafish DNA sequence from clone DKEY-204F11 in... 44 0.52
14gb|AC006556.3|AC006556 Homo sapiens, clone hRPK.37_A_1, complete... 44 0.52
15dbj|AP001660.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 44 0.52
16emb|AL078615.2|HS98L15 Homo sapiens chromosome 21 PAC RPCIP704L1... 44 0.52
17emb|BX855606.3| Mouse DNA sequence from clone RP24-136M10 on chr... 42 2.1
18gb|AC104781.4| Homo sapiens BAC clone RP11-30C22 from 2, complet... 42 2.1
19emb|AJ316276.1|CTA316276 Caulerpa taxifolia 18S rRNA gene (parti... 42 2.1
20gb|AC165250.2| Mus musculus BAC clone RP24-209D3 from chromosome... 42 2.1
21gb|AC113474.18| Mus musculus chromosome 5, clone RP23-297J17, co... 40 8.1
22gb|AC024817.1| Caenorhabditis elegans cosmid Y54G2A, complete se... 40 8.1
23gb|AC145477.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.1
24gb|AC135239.3| Mus musculus BAC clone RP23-324D2 from chromosome... 40 8.1
25gb|AC145396.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.1
26emb|CT030514.1| Xenopus tropicalis finished cDNA, clone TTpA022d06 40 8.1
27gb|AE014305.1| Homo sapiens chromosome 13q34 schizophrenia regio... 40 8.1
28gb|AC100953.12| Mus musculus chromosome 5, clone RP23-73P16, com... 40 8.1
29gb|AC154352.2| Mus musculus BAC clone RP24-545J11 from chromosom... 40 8.1
30emb|AL590132.7| Human DNA sequence from clone RP11-255G4 on chro... 40 8.1
31emb|AL359262.9| Human DNA sequence from clone RP11-334O13 on chr... 40 8.1
32emb|AL162717.10| Human DNA sequence from clone RP11-123H22 on ch... 40 8.1
33emb|AL136455.6| Human DNA sequence from clone RP11-97C18 on chro... 40 8.1
34gb|AC163212.3| Mus musculus chromosome 3, clone RP24-102O2, comp... 40 8.1
35gb|AC108078.3| Homo sapiens BAC clone RP11-790I12 from 4, comple... 40 8.1
36gb|AC104041.5| Homo sapiens chromosome 15, clone CTD-2034I4, com... 40 8.1
37gb|AC091214.20| Homo sapiens 12q BAC RP11-13F9 (Roswell Park Can... 40 8.1
38dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
39gb|AC097536.3| Homo sapiens BAC clone RP11-803N5 from 2, complet... 40 8.1
40gb|AC018737.9| Homo sapiens BAC clone RP11-416H1 from 2, complet... 40 8.1
41ref|NM_001011408.1| Xenopus tropicalis hypothetical LOC496885 (L... 40 8.1
42gb|AF135419.1|AF135419 sHomo sapiens 4q13 genomic sequence 40 8.1
43emb|BX679673.6| Mouse DNA sequence from clone RP23-252K15 on chr... 40 8.1
44emb|BX004989.8| Zebrafish DNA sequence from clone CH211-167M4 in... 40 8.1
45dbj|AK069902.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.1
46emb|AL359950.4|CNS05TF2 Human chromosome 14 DNA sequence BAC R-5... 40 8.1
47emb|BX663521.10| Zebrafish DNA sequence from clone DKEYP-50F5 in... 40 8.1
48emb|BX005458.19| Zebrafish DNA sequence from clone CH211-173L10 ... 40 8.1
49dbj|AP001835.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.1
50dbj|AP000755.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.1
51gb|BC088778.1| Xenopus tropicalis hypothetical LOC496885, mRNA (... 40 8.1
52emb|AL773540.18| Mouse DNA sequence from clone RP23-177L19 on ch... 40 8.1
53emb|AL837507.5| Mouse DNA sequence from clone RP23-267B2 on chro... 40 8.1 
>dbj|AP005930.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0502B12
          Length = 197160

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 72/79 (91%), Gaps = 2/79 (2%)
 Strand = Plus / Minus

                                                                          
Query: 286    atgtggatatctcattaatttgacccttgcagctgacagttgtgatgtagaaaaatgttc 345
              |||||||||||||||| | |||||| ||| |  ||||||||||||||||||||| |||||
Sbjct: 167558 atgtggatatctcatttaattgacc-ttggaattgacagttgtgatgtagaaaa-tgttc 167501

                                 
Query: 346    tttgcaatagcaacaggtt 364
              |||||||||||||||||||
Sbjct: 167500 tttgcaatagcaacaggtt 167482



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 34/35 (97%), Gaps = 1/35 (2%)
 Strand = Plus / Minus

                                                 
Query: 536    ttaaaactcatgtagaaatgttgtacaacaataaa 570
              ||||||||||||||||||||||||| |||||||||
Sbjct: 167300 ttaaaactcatgtagaaatgttgta-aacaataaa 167267
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>dbj|AK121119.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074F05, full
            insert sequence
          Length = 5217

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 72/79 (91%), Gaps = 2/79 (2%)
 Strand = Plus / Plus

                                                                        
Query: 286  atgtggatatctcattaatttgacccttgcagctgacagttgtgatgtagaaaaatgttc 345
            |||||||||||||||| | |||||| ||| |  ||||||||||||||||||||| |||||
Sbjct: 4856 atgtggatatctcatttaattgacc-ttggaattgacagttgtgatgtagaaaa-tgttc 4913

                               
Query: 346  tttgcaatagcaacaggtt 364
            |||||||||||||||||||
Sbjct: 4914 tttgcaatagcaacaggtt 4932



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 34/35 (97%), Gaps = 1/35 (2%)
 Strand = Plus / Plus

                                               
Query: 536  ttaaaactcatgtagaaatgttgtacaacaataaa 570
            ||||||||||||||||||||||||| |||||||||
Sbjct: 5114 ttaaaactcatgtagaaatgttgta-aacaataaa 5147
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>dbj|AK068222.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013138E23, full
            insert sequence
          Length = 3875

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 72/79 (91%), Gaps = 2/79 (2%)
 Strand = Plus / Plus

                                                                        
Query: 286  atgtggatatctcattaatttgacccttgcagctgacagttgtgatgtagaaaaatgttc 345
            |||||||||||||||| | |||||| ||| |  ||||||||||||||||||||| |||||
Sbjct: 3435 atgtggatatctcatttaattgacc-ttggaattgacagttgtgatgtagaaaa-tgttc 3492

                               
Query: 346  tttgcaatagcaacaggtt 364
            |||||||||||||||||||
Sbjct: 3493 tttgcaatagcaacaggtt 3511



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 34/35 (97%), Gaps = 1/35 (2%)
 Strand = Plus / Plus

                                               
Query: 536  ttaaaactcatgtagaaatgttgtacaacaataaa 570
            ||||||||||||||||||||||||| |||||||||
Sbjct: 3693 ttaaaactcatgtagaaatgttgta-aacaataaa 3726
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 34/35 (97%), Gaps = 1/35 (2%)
 Strand = Plus / Plus

                                                  
Query: 536     ttaaaactcatgtagaaatgttgtacaacaataaa 570
               ||||||||||||||||||||||||| |||||||||
Sbjct: 6059799 ttaaaactcatgtagaaatgttgta-aacaataaa 6059832
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 34/35 (97%), Gaps = 1/35 (2%)
 Strand = Plus / Minus

                                                   
Query: 536      ttaaaactcatgtagaaatgttgtacaacaataaa 570
                ||||||||||||||||||||||||| |||||||||
Sbjct: 34241352 ttaaaactcatgtagaaatgttgta-aacaataaa 34241319
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>dbj|AP003073.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0702B09
          Length = 172541

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 34/35 (97%), Gaps = 1/35 (2%)
 Strand = Plus / Minus

                                                
Query: 536   ttaaaactcatgtagaaatgttgtacaacaataaa 570
             ||||||||||||||||||||||||| |||||||||
Sbjct: 77038 ttaaaactcatgtagaaatgttgta-aacaataaa 77005
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 34/35 (97%), Gaps = 1/35 (2%)
 Strand = Plus / Plus

                                                  
Query: 536     ttaaaactcatgtagaaatgttgtacaacaataaa 570
               ||||||||||||||||||||||||| |||||||||
Sbjct: 6059701 ttaaaactcatgtagaaatgttgta-aacaataaa 6059734
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>emb|AL928778.4|CNS08CC8 Oryza sativa chromosome 12, . BAC OSJNBb0074J13 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 125153

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 34/35 (97%), Gaps = 1/35 (2%)
 Strand = Plus / Minus

                                                
Query: 536   ttaaaactcatgtagaaatgttgtacaacaataaa 570
             ||||||||||||||||||||||||| |||||||||
Sbjct: 45547 ttaaaactcatgtagaaatgttgta-aacaataaa 45514
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>emb|BX247948.4| Zebrafish DNA sequence from clone DKEY-34E4 in linkage group 5,
             complete sequence
          Length = 131707

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 63    gcaagaaggaatctgatgacgaaactct 90
             |||||||||||||||||||| |||||||
Sbjct: 79904 gcaagaaggaatctgatgacaaaactct 79931
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>emb|BX248103.7| Zebrafish DNA sequence from clone CH211-226C13 in linkage group 5,
             complete sequence
          Length = 66173

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 63    gcaagaaggaatctgatgacgaaactct 90
             |||||||||||||||||||| |||||||
Sbjct: 59312 gcaagaaggaatctgatgacaaaactct 59339
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>emb|AL929590.15| Zebrafish DNA sequence from clone DKEY-46K8 in linkage group 5,
            complete sequence
          Length = 163866

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 63   gcaagaaggaatctgatgacgaaactct 90
            |||||||||||||||||||| |||||||
Sbjct: 6910 gcaagaaggaatctgatgacaaaactct 6883
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>dbj|BS000007.1| Pan troglodytes chromosome 22 clone:PTB-005B20, map 22, complete
             sequences
          Length = 123600

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 341   tgttctttgcaatagcaacagg 362
             ||||||||||||||||||||||
Sbjct: 89132 tgttctttgcaatagcaacagg 89111
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>emb|BX649502.4| Zebrafish DNA sequence from clone DKEY-204F11 in linkage group 3,
             complete sequence
          Length = 247387

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 128   tgatatattttcacttttctga 149
             ||||||||||||||||||||||
Sbjct: 92035 tgatatattttcacttttctga 92014
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>gb|AC006556.3|AC006556 Homo sapiens, clone hRPK.37_A_1, complete sequence
          Length = 156833

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 341    tgttctttgcaatagcaacagg 362
              ||||||||||||||||||||||
Sbjct: 132713 tgttctttgcaatagcaacagg 132734
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>dbj|AP001660.1| Homo sapiens genomic DNA, chromosome 21q, section 4/105
          Length = 340000

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 341    tgttctttgcaatagcaacagg 362
              ||||||||||||||||||||||
Sbjct: 209041 tgttctttgcaatagcaacagg 209020
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>emb|AL078615.2|HS98L15 Homo sapiens chromosome 21 PAC RPCIP704L1598Q2, complete sequence
          Length = 116189

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 341   tgttctttgcaatagcaacagg 362
             ||||||||||||||||||||||
Sbjct: 20475 tgttctttgcaatagcaacagg 20454
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>emb|BX855606.3| Mouse DNA sequence from clone RP24-136M10 on chromosome 4, complete
            sequence
          Length = 79882

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 138  tcacttttctgattctcttctgttt 162
            ||||||||||| |||||||||||||
Sbjct: 2180 tcacttttctgtttctcttctgttt 2204
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>gb|AC104781.4| Homo sapiens BAC clone RP11-30C22 from 2, complete sequence
          Length = 109843

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 472   ttgagggtcagatgtgtaaca 492
             |||||||||||||||||||||
Sbjct: 55997 ttgagggtcagatgtgtaaca 55977
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>emb|AJ316276.1|CTA316276 Caulerpa taxifolia 18S rRNA gene (partial), 5.8S rRNA gene, 28S
           rRNA gene (partial), internal transcribed spacer 1
           (ITS1) and internal transcribed spacer 2 (ITS2), clone 1
          Length = 625

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 340 atgttctttgcaatagcaaca 360
           |||||||||||||||||||||
Sbjct: 116 atgttctttgcaatagcaaca 96
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>gb|AC165250.2| Mus musculus BAC clone RP24-209D3 from chromosome 13, complete sequence
          Length = 173581

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 396    tgctttgtaatgttatttagg 416
              |||||||||||||||||||||
Sbjct: 110291 tgctttgtaatgttatttagg 110311
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>gb|AC113474.18| Mus musculus chromosome 5, clone RP23-297J17, complete sequence
          Length = 219936

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    attctcttctgtttgttttc 168
              ||||||||||||||||||||
Sbjct: 103598 attctcttctgtttgttttc 103579
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>gb|AC024817.1| Caenorhabditis elegans cosmid Y54G2A, complete sequence
          Length = 286680

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 560    acaacaataaatcagtgtct 579
              ||||||||||||||||||||
Sbjct: 244609 acaacaataaatcagtgtct 244628
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>gb|AC145477.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1402B06,
              complete sequence
          Length = 134001

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    gattctcttctgtttgtttt 167
              ||||||||||||||||||||
Sbjct: 130201 gattctcttctgtttgtttt 130220
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>gb|AC135239.3| Mus musculus BAC clone RP23-324D2 from chromosome 3, complete sequence
          Length = 190178

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 341   tgttctttgcaatagcaacaggtt 364
             |||||||||||| |||||||||||
Sbjct: 96601 tgttctttgcaagagcaacaggtt 96624
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>gb|AC145396.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0042F15, complete sequence
          Length = 162959

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   gattctcttctgtttgtttt 167
             ||||||||||||||||||||
Sbjct: 37390 gattctcttctgtttgtttt 37409
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>emb|CT030514.1| Xenopus tropicalis finished cDNA, clone TTpA022d06
          Length = 2879

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 294 atctcattaatttgaccctt 313
           ||||||||||||||||||||
Sbjct: 240 atctcattaatttgaccctt 221
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>gb|AE014305.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 2 of
              11 of the complete sequence
          Length = 613322

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    ttcacttttctgattctctt 156
              ||||||||||||||||||||
Sbjct: 150418 ttcacttttctgattctctt 150399
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>gb|AC100953.12| Mus musculus chromosome 5, clone RP23-73P16, complete sequence
          Length = 216490

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   cttctgtttgttttctgttg 173
             ||||||||||||||||||||
Sbjct: 87283 cttctgtttgttttctgttg 87302
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>gb|AC154352.2| Mus musculus BAC clone RP24-545J11 from chromosome 13, complete sequence
          Length = 199388

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     ggaagatatggagttggaag 32
              ||||||||||||||||||||
Sbjct: 156737 ggaagatatggagttggaag 156756
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>emb|AL590132.7| Human DNA sequence from clone RP11-255G4 on chromosome 1 Contains part
             of the KCNH1 gene for a potassium voltage-gated channel,
             subfamily H (eag-related), member, complete sequence
          Length = 150090

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   cacttttctgattctcttct 158
             ||||||||||||||||||||
Sbjct: 21728 cacttttctgattctcttct 21709
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>emb|AL359262.9| Human DNA sequence from clone RP11-334O13 on chromosome 13 Contains a
              high-mobility group pseudogene, complete sequence
          Length = 162763

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 388    gaaggatttgctttgtaatg 407
              ||||||||||||||||||||
Sbjct: 119905 gaaggatttgctttgtaatg 119924
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>emb|AL162717.10| Human DNA sequence from clone RP11-123H22 on chromosome 13q14.2-21.2
             Contains a novel gene, complete sequence
          Length = 153859

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   ttcacttttctgattctctt 156
             ||||||||||||||||||||
Sbjct: 29997 ttcacttttctgattctctt 29978
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>emb|AL136455.6| Human DNA sequence from clone RP11-97C18 on chromosome 1p13.3-21.2
             Contains an adaptor-related protein complex 2, beta 1
             subunit (AP2B1) pseudogene, complete sequence
          Length = 159570

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   atattttcacttttctgatt 151
             ||||||||||||||||||||
Sbjct: 64486 atattttcacttttctgatt 64505
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>gb|AC163212.3| Mus musculus chromosome 3, clone RP24-102O2, complete sequence
          Length = 199319

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 341   tgttctttgcaatagcaacaggtt 364
             |||||||||||| |||||||||||
Sbjct: 67043 tgttctttgcaagagcaacaggtt 67066
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>gb|AC108078.3| Homo sapiens BAC clone RP11-790I12 from 4, complete sequence
          Length = 103343

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   tctgtttgttttctgttgaa 175
             ||||||||||||||||||||
Sbjct: 65479 tctgtttgttttctgttgaa 65498
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>gb|AC104041.5| Homo sapiens chromosome 15, clone CTD-2034I4, complete sequence
          Length = 188519

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 131    tatattttcacttttctgat 150
              ||||||||||||||||||||
Sbjct: 125239 tatattttcacttttctgat 125220
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>gb|AC091214.20| Homo sapiens 12q BAC RP11-13F9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 143331

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 150   ttctcttctgtttgttttctgttg 173
             ||||||||||||| ||||||||||
Sbjct: 76293 ttctcttctgtttcttttctgttg 76316
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 148     gattctcttctgtttgtttt 167
               ||||||||||||||||||||
Sbjct: 7852615 gattctcttctgtttgtttt 7852634
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>gb|AC097536.3| Homo sapiens BAC clone RP11-803N5 from 2, complete sequence
          Length = 194553

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   cctgatatattttcactttt 145
             ||||||||||||||||||||
Sbjct: 23292 cctgatatattttcactttt 23311
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>gb|AC018737.9| Homo sapiens BAC clone RP11-416H1 from 2, complete sequence
          Length = 206454

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 536   ttaaaactcatgtagaaatg 555
             ||||||||||||||||||||
Sbjct: 15901 ttaaaactcatgtagaaatg 15882
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>ref|NM_001011408.1| Xenopus tropicalis hypothetical LOC496885 (LOC496885), mRNA
          Length = 1567

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 294 atctcattaatttgaccctt 313
           ||||||||||||||||||||
Sbjct: 226 atctcattaatttgaccctt 207
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>gb|AF135419.1|AF135419 sHomo sapiens 4q13 genomic sequence
          Length = 63705

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   tctgtttgttttctgttgaa 175
             ||||||||||||||||||||
Sbjct: 23543 tctgtttgttttctgttgaa 23524
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>emb|BX679673.6| Mouse DNA sequence from clone RP23-252K15 on chromosome X, complete
             sequence
          Length = 81270

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 327   gtgatgtagaaaaatgttctttgc 350
             |||||| |||||||||||||||||
Sbjct: 37950 gtgatggagaaaaatgttctttgc 37927
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>emb|BX004989.8| Zebrafish DNA sequence from clone CH211-167M4 in linkage group 6,
              complete sequence
          Length = 172968

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 63     gcaagaaggaatctgatgac 82
              ||||||||||||||||||||
Sbjct: 126712 gcaagaaggaatctgatgac 126693
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>dbj|AK069902.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034K17, full
           insert sequence
          Length = 1306

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 148 gattctcttctgtttgtttt 167
           ||||||||||||||||||||
Sbjct: 679 gattctcttctgtttgtttt 698
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>emb|AL359950.4|CNS05TF2 Human chromosome 14 DNA sequence BAC R-566K8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 194407

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   ttctcttctgtttgttttct 169
             ||||||||||||||||||||
Sbjct: 69509 ttctcttctgtttgttttct 69528
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>emb|BX663521.10| Zebrafish DNA sequence from clone DKEYP-50F5 in linkage group 14,
              complete sequence
          Length = 179663

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 63     gcaagaaggaatctgatgac 82
              ||||||||||||||||||||
Sbjct: 108198 gcaagaaggaatctgatgac 108217
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>emb|BX005458.19| Zebrafish DNA sequence from clone CH211-173L10 in linkage group 18,
             complete sequence
          Length = 140289

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 161   ttgttttctgttgaatctgcagag 184
             ||||||| ||||||||||||||||
Sbjct: 28604 ttgttttgtgttgaatctgcagag 28581
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>dbj|AP001835.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-668M17, complete
             sequences
          Length = 204939

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 378   agctggataggaaggatttg 397
             ||||||||||||||||||||
Sbjct: 97296 agctggataggaaggatttg 97277
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>dbj|AP000755.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-716H6, complete
              sequences
          Length = 152306

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 378    agctggataggaaggatttg 397
              ||||||||||||||||||||
Sbjct: 151375 agctggataggaaggatttg 151356
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>gb|BC088778.1| Xenopus tropicalis hypothetical LOC496885, mRNA (cDNA clone
           MGC:108162 IMAGE:7006695), complete cds
          Length = 1567

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 294 atctcattaatttgaccctt 313
           ||||||||||||||||||||
Sbjct: 226 atctcattaatttgaccctt 207
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>emb|AL773540.18| Mouse DNA sequence from clone RP23-177L19 on chromosome 2, complete
             sequence
          Length = 217148

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 343   ttctttgcaatagcaacagg 362
             ||||||||||||||||||||
Sbjct: 74082 ttctttgcaatagcaacagg 74063
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>emb|AL837507.5| Mouse DNA sequence from clone RP23-267B2 on chromosome 4, complete
             sequence
          Length = 99832

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    gagttggaagagaaaaaccctgat 46
             |||||||||||||||| |||||||
Sbjct: 59940 gagttggaagagaaaagccctgat 59917


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,980,498
Number of Sequences: 3902068
Number of extensions: 5980498
Number of successful extensions: 120294
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120028
Number of HSP's gapped (non-prelim): 260
length of query: 596
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 573
effective length of database: 17,143,297,704
effective search space: 9823109584392
effective search space used: 9823109584392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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