ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd23g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KPYC_SOLTU (P22200) Pyruvate kinase, cytosolic isozyme (EC 2.7.1... 70 3e-12
2KPYC_SOYBN (Q42806) Pyruvate kinase, cytosolic isozyme (EC 2.7.1... 69 7e-12
3KPYC_TOBAC (Q42954) Pyruvate kinase, cytosolic isozyme (EC 2.7.1... 57 4e-08
4KPYC_ARATH (O65595) Probable pyruvate kinase, cytosolic isozyme ... 50 3e-06
5BCOR_HUMAN (Q6W2J9) BCoR protein (BCL-6 corepressor) 32 1.2
6NGL1_HUMAN (Q9HCJ2) Netrin-G1 ligand precursor (NGL-1) (Leucine-... 30 2.7
7NGL1_MOUSE (Q8C031) Netrin-G1 ligand precursor (NGL-1) (Leucine-... 30 3.6
8SYN1_RAT (P09951) Synapsin-1 (Synapsin I) 29 6.1
9CCR5_ATEGE (Q95NC4) C-C chemokine receptor type 5 (C-C CKR-5) (C... 29 6.1
10LRC4B_HUMAN (Q9NT99) Leucine-rich repeat-containing protein 4B p... 29 7.9
11TIG_WOLPM (Q73I58) Trigger factor (TF) 29 7.9
12TFEB_HUMAN (P19484) Transcription factor EB 29 7.9
13BCOR_MOUSE (Q8CGN4) BCoR protein (BCL-6 corepressor) 29 7.9
14LRC4B_MOUSE (P0C192) Leucine-rich repeat-containing protein 4B p... 29 7.9
15SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I) 29 7.9

>KPYC_SOLTU (P22200) Pyruvate kinase, cytosolic isozyme (EC 2.7.1.40) (PK)|
          Length = 510

 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 36/46 (78%), Positives = 39/46 (84%)
 Frame = +2

Query: 2   DSESTEEILQAALKSAVKKQLCKAGDAVVVLHRIGVASVIKICTVQ 139
           DSESTE IL+AALKSAV + LCK GDAVV LHRIG ASVIKIC V+
Sbjct: 465 DSESTEVILEAALKSAVTRGLCKPGDAVVALHRIGSASVIKICVVK 510



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>KPYC_SOYBN (Q42806) Pyruvate kinase, cytosolic isozyme (EC 2.7.1.40) (PK)|
          Length = 511

 Score = 68.9 bits (167), Expect = 7e-12
 Identities = 34/46 (73%), Positives = 39/46 (84%)
 Frame = +2

Query: 2   DSESTEEILQAALKSAVKKQLCKAGDAVVVLHRIGVASVIKICTVQ 139
           D+ESTE IL+AALKSA ++ LCK GDAVV LHRIG ASVIKIC V+
Sbjct: 466 DAESTEVILEAALKSATERALCKPGDAVVALHRIGAASVIKICIVK 511



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>KPYC_TOBAC (Q42954) Pyruvate kinase, cytosolic isozyme (EC 2.7.1.40) (PK)|
          Length = 508

 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 29/44 (65%), Positives = 33/44 (75%)
 Frame = +2

Query: 8   ESTEEILQAALKSAVKKQLCKAGDAVVVLHRIGVASVIKICTVQ 139
           ESTEE L  AL+ A  K LCK GD+VV LHR+G ASVIKI TV+
Sbjct: 465 ESTEEALDFALQHAKTKGLCKQGDSVVALHRVGTASVIKIVTVK 508



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>KPYC_ARATH (O65595) Probable pyruvate kinase, cytosolic isozyme (EC 2.7.1.40)|
           (PK)
          Length = 497

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 27/44 (61%), Positives = 31/44 (70%)
 Frame = +2

Query: 8   ESTEEILQAALKSAVKKQLCKAGDAVVVLHRIGVASVIKICTVQ 139
           ESTEE L+ A +   KKQLCK GD+VV L R G A VIKI TV+
Sbjct: 454 ESTEETLEFASEYGKKKQLCKTGDSVVALFRTGNAIVIKILTVK 497



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>BCOR_HUMAN (Q6W2J9) BCoR protein (BCL-6 corepressor)|
          Length = 1755

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -1

Query: 156 MPGGHHWTVQILMTEATPMRCRTTTASPALQSCFFTADLSAAWRI 22
           +P  H+    I  + A+PMR  T +ASPA+      AD S  W++
Sbjct: 247 LPPPHYVGPHIPSSLASPMRLSTPSASPAIPPLVHCADKSLPWKM 291



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>NGL1_HUMAN (Q9HCJ2) Netrin-G1 ligand precursor (NGL-1) (Leucine-rich|
           repeat-containing protein 4C)
          Length = 640

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 168 HPGPCCRGETWVLWKQVDIVPSVAVCCIDPIRAGKLGGRGLRYIELFYYRWYAP 329
           +P  C     W+ W   D+ PS   CC        L GR +  ++  Y+  YAP
Sbjct: 301 NPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAP 354



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>NGL1_MOUSE (Q8C031) Netrin-G1 ligand precursor (NGL-1) (Leucine-rich|
           repeat-containing protein 4C)
          Length = 640

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 168 HPGPCCRGETWVLWKQVDIVPSVAVCCIDPIRAGKLGGRGLRYIELFYYRWYAP 329
           +P  C     W+ W   D+ PS   CC        L GR +  ++  Y+  YAP
Sbjct: 301 NPWNCNCDILWLSWWIRDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAP 354



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>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)|
          Length = 704

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 289 SPLPPNLPARIGSMQQTATDGTISTCFHKTQVSPRQQGPG 170
           SPLP  LP+   + QQ+A+  T  T     Q  P   GPG
Sbjct: 500 SPLPQRLPSPTAAPQQSASQATPMTQGQGRQSRPVAGGPG 539



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>CCR5_ATEGE (Q95NC4) C-C chemokine receptor type 5 (C-C CKR-5) (CC-CKR-5)|
           (CCR-5) (CCR5) (CD195 antigen)
          Length = 352

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 243 CCIDPIRAGKLGGRGLRYIELFYYRWYAPCSMVCGRCHACTIF 371
           CC++PI    +G +   Y+ +F+ +  A C      C  C+IF
Sbjct: 290 CCVNPIIYAFVGEKFRNYLLVFFQKHIAKCF-----CECCSIF 327



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>LRC4B_HUMAN (Q9NT99) Leucine-rich repeat-containing protein 4B precursor|
          Length = 713

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +3

Query: 168 HPGPCCRGETWVLWKQVDIVPSVAVCCIDPIRAGKLGGRGLRYIELFYYRWYAP 329
           +P  C     W+ W   + VPS   CC        L GR +  ++  ++  YAP
Sbjct: 311 NPWHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLKGRYIGELDQSHFTCYAP 364



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>TIG_WOLPM (Q73I58) Trigger factor (TF)|
          Length = 444

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = -3

Query: 466 ILLLPHVSTDITTKRVLQSSEYNKQQQQLIREKIVQ 359
           +++  +VS D+   RVL+  E NKQ Q+L+R + ++
Sbjct: 379 VIVNQYVSKDVQFDRVLKHFESNKQFQELVRGQALE 414



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>TFEB_HUMAN (P19484) Transcription factor EB|
          Length = 476

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 221 INLFPQDPGFATAARTGVLGSPCPADIT 138
           +N++  DP   TA+  GV  S CPAD+T
Sbjct: 191 LNVYSSDPQ-VTASLVGVTSSSCPADLT 217



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>BCOR_MOUSE (Q8CGN4) BCoR protein (BCL-6 corepressor)|
          Length = 1759

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = -1

Query: 156 MPGGHHWTVQILMTEATPMRCRTTTASPALQSCFFTADLSAAWRI-----SSVDSES 1
           +P  H+    I  + A+PMR  T +AS A+      +D S  W++     + VDS S
Sbjct: 247 LPPPHYVNPHIPSSLASPMRLSTPSASAAIPPLVHCSDKSLPWKMGVNPGNPVDSHS 303



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>LRC4B_MOUSE (P0C192) Leucine-rich repeat-containing protein 4B precursor|
          Length = 709

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +3

Query: 168 HPGPCCRGETWVLWKQVDIVPSVAVCCIDPIRAGKLGGRGLRYIELFYYRWYAP 329
           +P  C     W+ W   + VPS   CC        L GR +  ++  ++  YAP
Sbjct: 313 NPWHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLKGRYIGELDQSHFTCYAP 366



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>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 289 SPLPPNLPARIGSMQQTATDGTISTCFHKTQVSPRQQGPG 170
           SPLP  LP+   + QQ+A+  T  T     Q  P   GPG
Sbjct: 502 SPLPQRLPSPTAAPQQSASQATPVTQGQGRQSRPVAGGPG 541


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,333,089
Number of Sequences: 219361
Number of extensions: 1361624
Number of successful extensions: 3729
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3729
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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