ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd23e24 |
|---|---|
| Clone Library Name | barley_pub |
>YTHD1_MOUSE (P59326) YTH domain protein 1 (Dermatomyositis associated with| cancer putative autoantigen 1 homolog) (DACA-1 homolog) Length = 559 Score = 146 bits (368), Expect = 1e-35 Identities = 70/129 (54%), Positives = 88/129 (68%) Frame = +2 Query: 2 KKLDAAYQEAQAKGSSCPIFLFFXVNTSGQFVGVAEMTGPXDFEKTLEYWQQDKWNGSFS 181 K+LD A++ +KG P++L F VN SG F GVAEM P D+ + W QDKW G F Sbjct: 419 KRLDGAFRSMSSKG---PVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFD 475 Query: 182 VKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIFKEHVSKTSILED 361 VKW VKDVPNN L+HI LENN+ KPVTNSRDTQ++ LE+ Q+LKI + TSI +D Sbjct: 476 VKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDD 535 Query: 362 FTFYENRQK 388 F+ YE RQ+ Sbjct: 536 FSHYEKRQE 544
>YTHD2_HUMAN (Q9Y5A9) YTH domain protein 2 (High-glucose-regulated protein 8)| (NY-REN-2 antigen) (CLL-associated antigen KW-14) Length = 579 Score = 143 bits (361), Expect = 9e-35 Identities = 70/129 (54%), Positives = 86/129 (66%) Frame = +2 Query: 2 KKLDAAYQEAQAKGSSCPIFLFFXVNTSGQFVGVAEMTGPXDFEKTLEYWQQDKWNGSFS 181 K+LDAAY+ KG P++L F VN SG F GVAEM D+ W QDKW G F Sbjct: 440 KRLDAAYRSMNGKG---PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFD 496 Query: 182 VKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIFKEHVSKTSILED 361 V+W VKDVPN+ L+HI LENNE KPVTNSRDTQ++ LE+ Q+LKI + TSI +D Sbjct: 497 VRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDD 556 Query: 362 FTFYENRQK 388 F+ YE RQ+ Sbjct: 557 FSHYEKRQE 565
>YTHD1_HUMAN (Q9BYJ9) YTH domain protein 1 (Dermatomyositis associated with| cancer putative autoantigen 1) (DACA-1) Length = 559 Score = 143 bits (361), Expect = 9e-35 Identities = 69/129 (53%), Positives = 88/129 (68%) Frame = +2 Query: 2 KKLDAAYQEAQAKGSSCPIFLFFXVNTSGQFVGVAEMTGPXDFEKTLEYWQQDKWNGSFS 181 K+LD+A++ +KG P++L F VN SG F GVAEM P D+ + W QDKW G F Sbjct: 419 KRLDSAFRCMSSKG---PVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFD 475 Query: 182 VKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIFKEHVSKTSILED 361 V+W VKDVPNN L+HI LENN+ KPVTNSRDTQ++ LE+ Q+LKI + TSI +D Sbjct: 476 VQWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIISSYKHTTSIFDD 535 Query: 362 FTFYENRQK 388 F YE RQ+ Sbjct: 536 FAHYEKRQE 544
>YTHD3_PONPY (Q5RFL8) YTH domain protein 3| Length = 585 Score = 142 bits (359), Expect = 1e-34 Identities = 71/129 (55%), Positives = 84/129 (65%) Frame = +2 Query: 2 KKLDAAYQEAQAKGSSCPIFLFFXVNTSGQFVGVAEMTGPXDFEKTLEYWQQDKWNGSFS 181 K+LDAAY+ KG P++L F VN SG F GVAEM D+ W QDKW G F Sbjct: 446 KRLDAAYRSLNGKG---PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFE 502 Query: 182 VKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIFKEHVSKTSILED 361 VKW VKDVPNN L+HI LENN+ KPVTNSRDTQ++ LE+ Q+LKI TSI +D Sbjct: 503 VKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDD 562 Query: 362 FTFYENRQK 388 F YE RQ+ Sbjct: 563 FAHYEKRQE 571
>YTHD3_MOUSE (Q8BYK6) YTH domain protein 3| Length = 585 Score = 142 bits (359), Expect = 1e-34 Identities = 71/129 (55%), Positives = 84/129 (65%) Frame = +2 Query: 2 KKLDAAYQEAQAKGSSCPIFLFFXVNTSGQFVGVAEMTGPXDFEKTLEYWQQDKWNGSFS 181 K+LDAAY+ KG P++L F VN SG F GVAEM D+ W QDKW G F Sbjct: 446 KRLDAAYRSLNGKG---PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFE 502 Query: 182 VKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIFKEHVSKTSILED 361 VKW VKDVPNN L+HI LENN+ KPVTNSRDTQ++ LE+ Q+LKI TSI +D Sbjct: 503 VKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDD 562 Query: 362 FTFYENRQK 388 F YE RQ+ Sbjct: 563 FAHYEKRQE 571
>YTHD3_HUMAN (Q7Z739) YTH domain protein 3| Length = 585 Score = 142 bits (359), Expect = 1e-34 Identities = 71/129 (55%), Positives = 84/129 (65%) Frame = +2 Query: 2 KKLDAAYQEAQAKGSSCPIFLFFXVNTSGQFVGVAEMTGPXDFEKTLEYWQQDKWNGSFS 181 K+LDAAY+ KG P++L F VN SG F GVAEM D+ W QDKW G F Sbjct: 446 KRLDAAYRSLNGKG---PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFE 502 Query: 182 VKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIFKEHVSKTSILED 361 VKW VKDVPNN L+HI LENN+ KPVTNSRDTQ++ LE+ Q+LKI TSI +D Sbjct: 503 VKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDD 562 Query: 362 FTFYENRQK 388 F YE RQ+ Sbjct: 563 FAHYEKRQE 571
>YTDC1_HUMAN (Q96MU7) YTH domain-containing protein 1 (Putative splicing factor| YT521) Length = 727 Score = 50.1 bits (118), Expect = 1e-06 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 6/114 (5%) Frame = +2 Query: 2 KKLDAAYQEAQAKGSSCPIFLFFXVNTSGQFVGVAEMTGPXDFEKTLEYW------QQDK 163 KKL+ A++ A++ + L F V SG+F G A ++ + +W Sbjct: 385 KKLNLAFRSARS------VILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKM 438 Query: 164 WNGSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIF 325 G F + W +++P H+ NE KPV RD Q+I LE G Q+ +F Sbjct: 439 LGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLF 492
>YTDC1_RAT (Q9QY02) YTH domain-containing protein 1 (Putative splicing factor| YT521) (RA301-binding protein) Length = 738 Score = 50.1 bits (118), Expect = 1e-06 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 6/114 (5%) Frame = +2 Query: 2 KKLDAAYQEAQAKGSSCPIFLFFXVNTSGQFVGVAEMTGPXDFEKTLEYW------QQDK 163 KKL+ A++ A++ + L F V SG+F G A ++ + +W Sbjct: 388 KKLNLAFRSARS------VILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKM 441 Query: 164 WNGSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIF 325 G F + W +++P H+ NE KPV RD Q+I LE G Q+ +F Sbjct: 442 LGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLF 495
>Y939_SULTO (Q973G3) Hypothetical protein ST0939 precursor| Length = 709 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/55 (27%), Positives = 31/55 (56%) Frame = -3 Query: 249 SLFSRTMCLRMLLGTSLTMCHLTENEPFHLSCCQYSRVFSKSXGPVISATPTNCP 85 S FS+ + + + TS T+ HL + +++ Y+ + + + +ISATP++ P Sbjct: 349 SNFSQKVTINVGNVTSYTIKHLKDGVTYYIQIVPYNSLGNGTPSDIISATPSSVP 403
>Y655_ARCFU (O29602) Hypothetical protein AF0655| Length = 425 Score = 30.0 bits (66), Expect = 1.4 Identities = 11/40 (27%), Positives = 25/40 (62%) Frame = +2 Query: 272 RDTQDINLEQGIQMLKIFKEHVSKTSILEDFTFYENRQKL 391 RD QD+++E+ +++LK ++ + + ++ENR+ L Sbjct: 87 RDPQDMSIEEKVELLKDLEKIIRDVCVSTKLVYFENRRVL 126
>EPIB_STAEP (P30195) Epidermin biosynthesis protein epiB| Length = 986 Score = 30.0 bits (66), Expect = 1.4 Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 16/95 (16%) Frame = +2 Query: 152 QQDKWNGSFSV---KWHIVKDV-----PNNIL------KHIVLENNEGKPVTNSRDTQD- 286 + + W F+ KWHI KDV N +L KH+++ E K R + Sbjct: 622 ETENWLNRFATIREKWHIPKDVIIAFGDNRLLLNLLNDKHLIILKKELKKHGRIRILESF 681 Query: 287 INLEQGIQMLKIFKEHVSKTSILE-DFTFYENRQK 388 IN +ML+I KTS+ E F +NR K Sbjct: 682 INESNNERMLEIVTPLYKKTSLKEQSFIIPKNRNK 716
>IL4RA_MOUSE (P16382) Interleukin-4 receptor alpha chain precursor (IL-4R-alpha)| (CD124 antigen) [Contains: Soluble interleukin-4 receptor alpha chain (IL-4-binding protein) (IL4-BP)] Length = 810 Score = 29.3 bits (64), Expect = 2.4 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 3/95 (3%) Frame = +2 Query: 107 EMTGPXDFEK-TLEYWQQDK--WNGSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRD 277 EM P ++ +E W + + W GSFS ++ P+N+ H + + N Sbjct: 90 EMNRPVQSDRYQMELWAEHRQLWQGSFSPSGNVKPLAPDNLTLHTNVSDEWLLTWNNLYP 149 Query: 278 TQDINLEQGIQMLKIFKEHVSKTSILEDFTFYENR 382 + ++ + I M+ I +E I+ + T+ E R Sbjct: 150 SNNLLYKDLISMVNISREDNPAEFIVYNVTYKEPR 184
>NOC4L_CHICK (Q5ZJC7) Nucleolar complex protein 4 homolog (NOC4 protein homolog)| (NOC4-like protein) (Nucleolar complex-associated protein 4-like protein) Length = 508 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = -2 Query: 361 VFQDRGLAHMLFEYLEHLNTLLKVDILCVTAVC 263 V DRG A+ +FE LE L + D+LC C Sbjct: 13 VLGDRGNANRVFEILELLAAKEEEDVLCAARTC 45
>UME5_YEAST (P39073) Meiotic mRNA stability protein kinase UME5 (EC 2.7.11.23)| Length = 541 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = -2 Query: 394 HQFLTVLVEGEVFQDRGLAHMLFEYLEH 311 ++ LT LVE +F +R HM++EY EH Sbjct: 202 NKHLTTLVE--IFLERKCVHMVYEYAEH 227
>GLGB_SYNY3 (P52981) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 770 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%) Frame = +2 Query: 137 TLEYWQQDKWNGSFSVKWHIVKDVPNNILKHIVLENN---EGKPVTNSRD 277 ++E+ Q +WN ++WH++ P+ LK E N + +P S D Sbjct: 597 SMEFGQWSEWNVWGDLEWHLLNFPPHQQLKQFFTELNHLYKNEPALYSND 646
>RIBD_CHLTR (O84735) Riboflavin biosynthesis protein ribD [Includes:| Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) (HTP reductase)] Length = 375 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = -3 Query: 144 SRVFSKSXGPVISATPTNCPLVFTXKNKNIG 52 SRVF S G + AT CP + K K++G Sbjct: 238 SRVFDLSSGSTLFATTQQCPKEYIQKLKDLG 268
>MAD1_YARLI (Q6C452) Spindle assembly checkpoint component MAD1 (Mitotic arrest| deficient protein 1) Length = 704 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = +2 Query: 77 NTSGQFVGVAEMTGPXDFEKTLEYWQQDK 163 N GQF GV + +F ++YW +DK Sbjct: 650 NHKGQFAGVIDSPLTDEFSNIVDYWVKDK 678
>GLGB_VIBF1 (Q5DZB8) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 715 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/69 (24%), Positives = 34/69 (49%) Frame = +2 Query: 191 HIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIFKEHVSKTSILEDFTF 370 H K++ N++ H+ +GK + QG++ L +F + S S++ DF Sbjct: 101 HTPKEMYNHLGAHLFNVVRDGKQI------------QGVRYL-VFAPNASSASVIGDFNQ 147 Query: 371 YENRQKLMQ 397 ++ R+ +MQ Sbjct: 148 WDGRRHIMQ 156
>PRKA_BACSU (P39134) Protein prkA| Length = 631 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 10/72 (13%) Frame = +2 Query: 131 EKTLEYWQQDKWNGSFSVKWHIVKDVPN----------NILKHIVLENNEGKPVTNSRDT 280 EK E Q+ KW G+F+ I+K+ P N++K +E +G+ + D Sbjct: 8 EKYREEEQRLKWEGTFADYLEIIKENPMVAQSAHSRVFNMIKDSGIEEIDGRKKYSFFDR 67 Query: 281 QDINLEQGIQML 316 + LE+ ++ L Sbjct: 68 ELFGLEESLERL 79
>IL4RA_HUMAN (P24394) Interleukin-4 receptor alpha chain precursor (IL-4R-alpha)| (CD124 antigen) [Contains: Soluble interleukin-4 receptor alpha chain (sIL4Ralpha/prot) (IL-4-binding protein) (IL4-BP)] Length = 825 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%) Frame = +2 Query: 137 TLEYW--QQDKWNGSFSVKWHIVKDVPNNILKH 229 TL+ W QQ W GSF H+ P N+ H Sbjct: 100 TLDLWAGQQLLWKGSFKPSEHVKPRAPGNLTVH 132
>GLGB_SYNP6 (Q5N4W5) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 774 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Frame = +2 Query: 140 LEYWQQDKWNGSFSVKWHIVKDVPNNILKHIVLENN---EGKPVTNSRDTQDINLE 298 +E+ Q +WN ++WH+++ P+ LK V + N P S D E Sbjct: 605 MEFGQWAEWNVWGDLEWHLLQYEPHQGLKQFVKDLNHLYRNAPALYSEDCNQAGFE 660
>YMA6_PODAN (P15562) Hypothetical 34.3 kDa protein in ATP6 5'region (ORFC)| Length = 296 Score = 27.7 bits (60), Expect = 6.9 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 13/78 (16%) Frame = +2 Query: 194 IVKDVPNNILKHIVLENNEGKPVTNSRDTQDI----NLEQGI---------QMLKIFKEH 334 IVK VPNN+L+ L + + +N+ + DI NL + I Q LK F++H Sbjct: 179 IVKPVPNNLLEKRGLSSMSVEMPSNTTNPSDIERLNNLLEDIKKSLELYDNQSLK-FRKH 237 Query: 335 VSKTSILEDFTFYENRQK 388 +S+ + + Y+ R K Sbjct: 238 ISEVNNNDPNCVYDPRSK 255
>GLGB_SYNP7 (P16954) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 773 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Frame = +2 Query: 140 LEYWQQDKWNGSFSVKWHIVKDVPNNILKHIVLENN---EGKPVTNSRDTQDINLE 298 +E+ Q +WN ++WH+++ P+ LK V + N P S D E Sbjct: 604 MEFGQWAEWNVWGDLEWHLLQYEPHQGLKQFVKDLNHLYRNAPALYSEDCNQAGFE 659
>YG4B_YEAST (P46951) Hypothetical 95.4 kDa protein in SNG1-PMT6 intergenic| region Length = 817 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/48 (25%), Positives = 24/48 (50%) Frame = +2 Query: 227 HIVLENNEGKPVTNSRDTQDINLEQGIQMLKIFKEHVSKTSILEDFTF 370 H++ N KPV + + NLE+ + M++ ++ T ++E F Sbjct: 54 HVIGSNGPAKPVCDVLLKESQNLEKNMSMMEELNDYPEITKLVEKILF 101
>SYR_RALSO (Q8Y2P8) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 600 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/47 (25%), Positives = 25/47 (53%) Frame = +2 Query: 149 WQQDKWNGSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDI 289 W + +NG + + D+ + L + ++G+PVT +RD ++I Sbjct: 197 WPEAAYNGDY------IADIAADYLAGKTVRASDGEPVTGARDVENI 237
>RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1 (EC 3.6.1.-)| (Helicase-like protein NHL) Length = 1400 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/30 (43%), Positives = 14/30 (46%) Frame = +1 Query: 181 CQVAHCQGCSQQHSQAHRPREQRRQASHKQ 270 C CQ C Q+H QA R AS KQ Sbjct: 1260 CDFQRCQACWQRHLQASRMCPACHTASRKQ 1289 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,902,884 Number of Sequences: 219361 Number of extensions: 975746 Number of successful extensions: 2976 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2901 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2967 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
