ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd22p10 |
|---|---|
| Clone Library Name | barley_pub |
>GTF1_STRDO (P11001) Glucosyltransferase-I precursor (EC 2.4.1.5) (GTF-I)| (Dextransucrase) (Sucrose 6-glucosyltransferase) Length = 1597 Score = 35.0 bits (79), Expect = 0.20 Identities = 40/158 (25%), Positives = 59/158 (37%), Gaps = 40/158 (25%) Frame = +1 Query: 172 YFSSVFSASPAANPRDARQMDLYTMLNKQNPKGQ--SGGG---TADG------------- 297 YF S +A ANP+ D +L N +GQ SG G TA+ Sbjct: 1358 YFGSDGTAQTQANPKGQTFKDGSGVLRFYNLEGQYVSGSGWYETAEHEWVYVKSGKVLTG 1417 Query: 298 -----------KSQGSPAKGR-VAYKDGKQFYPNESSESPYFGSSVHYGGRDFY---DSS 432 K G KG+ V DGK Y + +S F SV G+ +Y D + Sbjct: 1418 AQTIGNQRVYFKDNGHQVKGQLVTGNDGKLRYYDANSGDQAFNKSVTVNGKTYYFGSDGT 1477 Query: 433 PHKQANESSRNYKED-------NTDGSLATRGDWWQGS 525 QAN + +K+ N +G + W++ + Sbjct: 1478 AQTQANPKGQTFKDGSGVLRFYNLEGQYVSGSGWYKNA 1515
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 31.6 bits (70), Expect = 2.2 Identities = 32/112 (28%), Positives = 44/112 (39%), Gaps = 7/112 (6%) Frame = +1 Query: 172 YFSSVFSASPAANPRDARQMDLYTMLNKQNPKGQSGGGTADGKSQGS-----PAKGRVAY 336 Y SS + A PRD D Y+ + ++ G G DG + P+ G +Y Sbjct: 222 YPSSRDTRDYAPPPRDYTYRD-YSHSSSRDDYPSRGYGDRDGYGRDREYSDHPSGG--SY 278 Query: 337 KDGKQFYPNESSESPYFGSSVHYGGRDFYD--SSPHKQANESSRNYKEDNTD 486 +D + Y N S P G YGG YD SS S +Y +D Sbjct: 279 RDSYESYGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSD 330
>FA40B_MOUSE (Q8C9H6) Protein FAM40B| Length = 844 Score = 30.8 bits (68), Expect = 3.7 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = +1 Query: 259 NPKGQSGGGTADGKSQGSPAKGRVAYKDGKQFYPNESSES 378 +P +G G +G G+ KG+ A G++ + N+ ES Sbjct: 12 SPANDNGNGNGNGNGNGNGGKGKPAVPKGRETFRNQRRES 51
>DEOC_BDEBA (Q6MGR8) Deoxyribose-phosphate aldolase (EC 4.1.2.4)| (Phosphodeoxyriboaldolase) (Deoxyriboaldolase) (DERA) Length = 220 Score = 30.8 bits (68), Expect = 3.7 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = +3 Query: 153 GGGGERILQLRLLRVACGKSKRRQADGPVHDAEQAE 260 GGGG + ++L++ G S +A G + DA+QA+ Sbjct: 157 GGGGATVDDVKLMKSVVGSSMEVKASGGIKDAQQAK 192
>KMHB_DICDI (P90648) Myosin heavy chain kinase B (EC 2.7.11.7) (MHCK B)| Length = 732 Score = 30.4 bits (67), Expect = 4.9 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 3/60 (5%) Frame = +1 Query: 211 PRDARQMDLYTMLNKQNPKGQSGGGTADGKSQGSPAKGRVA---YKDGKQFYPNESSESP 381 P Q DL + K P G GG TAD K + A+ +A YK G Y P Sbjct: 41 PYGTSQTDL--QIGKMLPSGSGGGATADSKFEKFKARNTLADIQYKVGDTLYVRVKKSKP 98
>CO4A1_MOUSE (P02463) Collagen alpha-1(IV) chain precursor| Length = 1669 Score = 30.0 bits (66), Expect = 6.3 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Frame = +1 Query: 211 PRDARQMDLYTMLNKQNPKGQSG--GGTADGKSQGSPAKGRVAYKDGKQFYPNE 366 P +D+ +M ++ +G+ G G T D S+G P V KDG+ +P + Sbjct: 935 PGSMEHVDMGSMKGQKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQ 988
>DNAK3_SYNP7 (P50022) Chaperone protein dnaK3 (Heat shock protein 70-3) (Heat| shock 70 kDa protein 3) (HSP70-3) Length = 749 Score = 30.0 bits (66), Expect = 6.3 Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Frame = +1 Query: 196 SPAANP-RDARQMDLYTMLNKQNPKGQSGGGTADGKSQGSPAKGRVAYKDGKQFYPNESS 372 SP ++P R R ++ T ++++ P GG + + +P +GR +++ + + SS Sbjct: 666 SPVSDPYRGERWVEEQTSMSRREPVRDRNGGNGSVRPEPAPRRGRPTWEEDQPPRRDRSS 725 Query: 373 ESP 381 + P Sbjct: 726 QPP 728
>DNAK1_SYNP6 (Q5N1V0) Chaperone protein dnaK 1 (Heat shock protein 70 1) (Heat| shock 70 kDa protein 1) (HSP70 1) Length = 749 Score = 30.0 bits (66), Expect = 6.3 Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Frame = +1 Query: 196 SPAANP-RDARQMDLYTMLNKQNPKGQSGGGTADGKSQGSPAKGRVAYKDGKQFYPNESS 372 SP ++P R R ++ T ++++ P GG + + +P +GR +++ + + SS Sbjct: 666 SPVSDPYRGERWVEEQTSMSRREPVRDRNGGNGSVRPEPAPRRGRPTWEEDQPPRRDRSS 725 Query: 373 ESP 381 + P Sbjct: 726 QPP 728
>HSP71_PICAN (P53421) Heat-shock protein 70 1 (HSP72)| Length = 644 Score = 29.6 bits (65), Expect = 8.3 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = +1 Query: 400 HYGGRDFYDSSPHKQANESSRNYKEDNTDGSLATR 504 H GG DF + + ANE R YK+D T A R Sbjct: 226 HLGGEDFDNRLVNHFANEFKRKYKKDLTTNQRALR 260
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 29.6 bits (65), Expect = 8.3 Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 7/99 (7%) Frame = +1 Query: 211 PRDARQMDLYTMLNKQNPKGQSGGGTADGKSQGS-----PAKGRVAYKDGKQFYPNESSE 375 PRD D Y + ++ G G DG + P+ G +Y+D + Y N S Sbjct: 235 PRDYTYRD-YCHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGG--SYRDSYESYGNSRSA 291 Query: 376 SPYFGSSVHYGGRDFYD--SSPHKQANESSRNYKEDNTD 486 P G YGG YD SS S +Y +D Sbjct: 292 PPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSD 330
>GPR20_HUMAN (Q99678) Probable G-protein coupled receptor 20| Length = 358 Score = 29.6 bits (65), Expect = 8.3 Identities = 17/40 (42%), Positives = 22/40 (55%) Frame = +3 Query: 309 KPC*RSCCLQRWKTILPKRVLRVALFWFVCALRRPGLL*Q 428 +PC R L + +LP V+ V +CAL RPGLL Q Sbjct: 192 RPCCRVFALTVLEFLLPLLVISVFTGRIMCALSRPGLLHQ 231 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,519,646 Number of Sequences: 219361 Number of extensions: 1935161 Number of successful extensions: 6437 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 6199 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6426 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6257125380 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
