ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd22p10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK121844.1| Oryza sativa (japonica cultivar-group) cDNA clon... 188 2e-44
2gb|AC111016.2| Oryza sativa (japonica cultivar-group) chromosome... 84 7e-13
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 84 7e-13
4gb|AC165428.1| Strongylocentrotus purpuratus BAC clone contig co... 46 0.15
5ref|XM_369167.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 44 0.57
6gb|AC140389.3| Mus musculus BAC clone RP24-202H2 from chromosome... 44 0.57
7gb|AC158924.6| Mus musculus chromosome 18, clone RP23-109P21, co... 44 0.57
8gb|AC104713.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.3
9gb|AE010368.1| Methanopyrus kandleri AV19 section 67 of 157 of t... 42 2.3
10gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.3
11gb|AC118289.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.3
12gb|AC162789.4| Mus musculus chromosome 1, clone RP24-323I23, com... 42 2.3
13emb|AL122058.19|HSJ813D12 Human DNA sequence from clone RP4-813D... 42 2.3
14emb|CR378665.1| Photobacterium profundum SS9; segment 3/12 42 2.3
15emb|BX294128.19| Zebrafish DNA sequence from clone DKEYP-35F12 i... 42 2.3
16gb|AC153928.5| Mus musculus 6 BAC RP23-66O20 (Roswell Park Cance... 42 2.3
17dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 2.3
18gb|AC153612.6| Mus musculus 6 BAC RP23-435I4 (Roswell Park Cance... 42 2.3
19emb|BX005263.10| Mouse DNA sequence from clone RP23-395K13 on ch... 42 2.3
20emb|BX119978.6| Mouse DNA sequence from clone RP23-354H3 on chro... 42 2.3
21dbj|AK101373.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
22emb|CR388132.9| Zebrafish DNA sequence from clone DKEY-23A23 in ... 42 2.3
23dbj|AK060408.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
24gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 2.3
25gb|BC105767.1| Rattus norvegicus xylosyltransferase II, mRNA (cD... 40 9.0
26ref|XM_467446.1| Oryza sativa (japonica cultivar-group), mRNA 40 9.0
27ref|XM_506936.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 9.0
28ref|NM_189419.1| Oryza sativa (japonica cultivar-group), predic... 40 9.0
29ref|NM_022296.2| Rattus norvegicus xylosyltransferase II (Xylt2)... 40 9.0
30gb|AY596294.1| Haloarcula marismortui ATCC 43049 plasmid pNG500,... 40 9.0
31gb|AC124083.14| Mus musculus chromosome 5, clone RP24-400H4, com... 40 9.0
32gb|AE013198.1| Thermoanaerobacter tengcongensis MB4, section 225... 40 9.0
33gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 9.0
34gb|AC142167.4| Mus musculus BAC clone RP24-117F4 from chromosome... 40 9.0
35gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 40 9.0
36gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 9.0
37gb|AF040570.3| Amycolatopsis mediterranei rifamycin biosynthetic... 40 9.0
38gb|AC125176.4| Mus musculus BAC clone RP24-574O24 from chromosom... 40 9.0
39emb|AL139133.8| Human DNA sequence from clone RP11-185C19 on chr... 40 9.0
40emb|AJ223012.1|AMM223012 Amycolatopsis mediterranei genes encodi... 40 9.0
41gb|AC164579.5| Mus musculus 6 BAC RP23-384P24 (Roswell Park Canc... 40 9.0
42dbj|AK126211.1| Homo sapiens cDNA FLJ44223 fis, clone THYMU30061... 40 9.0
43gb|AC010377.7| Homo sapiens chromosome 5 clone CTD-2060J20, comp... 40 9.0
44gb|AC112200.3| Homo sapiens chromosome 5 clone RP11-54F2, comple... 40 9.0
45gb|AC158662.7| Mus musculus 6 BAC RP23-20K24 (Roswell Park Cance... 40 9.0
46gb|AC008966.9| Homo sapiens chromosome 5 clone CTD-2366F13, comp... 40 9.0
47gb|AC099030.1| Drosophila melanogaster, chromosome 2R, region 53... 40 9.0
48gb|AC099021.1| Drosophila melanogaster, chromosome 2R, region 53... 40 9.0
49emb|BX663612.9| Zebrafish DNA sequence from clone DKEY-24M14 in ... 40 9.0
50gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.0
51dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
52dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
53dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
54dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
55gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.0
56emb|AL731578.2|OSJN00229 Oryza sativa genomic DNA, chromosome 4,... 40 9.0
57gb|AC126415.9| Mus musculus chromosome 5, clone RP24-476K21, com... 40 9.0
58dbj|AP003448.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
59ref|XM_342255.2| PREDICTED: Rattus norvegicus similar to Restin ... 40 9.0
60gb|DQ163919.1| Bacteriophage PA16, complete genome 40 9.0
61gb|DQ163918.1| Bacteriophage PA7, complete genome 40 9.0
62emb|BX000536.7| Zebrafish DNA sequence from clone CH211-10C6 in ... 40 9.0
63dbj|AP004165.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
64dbj|AK104317.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.0
65dbj|AK071251.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.0
66emb|CR847514.13| Zebrafish DNA sequence from clone DKEYP-11D6 in... 40 9.0
67emb|AJ295749.2|RNO295749 Rattus norvegicus mRNA for xylosyltrans... 40 9.0
68gb|AE003805.3| Drosophila melanogaster chromosome 2R, section 45... 40 9.0
69emb|AL837516.14| Mouse DNA sequence from clone RP23-234L8 on chr... 40 9.0
70gb|AC004641.1|AC004641 Drosophila melanogaster DNA sequence (P1s... 40 9.0
71dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 9.0
72gb|M13094.1|RATB044G1 Rat brain 0-44 gene, segment 1 40 9.0
73dbj|AB015178.1| Streptomyces cyaneus plasmid pSA1.1 gene for Rep... 40 9.0
74dbj|AB010724.1| Streptomyces cyaneus plasmid pSA1.1, complete se... 40 9.0 
>dbj|AK121844.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101G01, full
           insert sequence
          Length = 924

 Score =  188 bits (95), Expect = 2e-44
 Identities = 214/253 (84%), Gaps = 3/253 (1%)
 Strand = Plus / Plus

                                                                       
Query: 155 cggcggcggggaacggatacttcagctccgtcttctccgcgtcgcctgcggcaaatccaa 214
           ||||||||| |||||| ||||||||| |||||||||||||||||||  |||||||| | |
Sbjct: 272 cggcggcggcgaacgggtacttcagcaccgtcttctccgcgtcgcccacggcaaatacga 331

                                                                       
Query: 215 gagacgccaggcagatggacctgtacacgatgctgaacaagcagaaccccaaagggcaga 274
            |||||| | ||||  |||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 332 aagacgcgaagcaggcggacctgtacgcgatgctgaacaagcagaactccaaagggcaga 391

                                                                       
Query: 275 gcggtgggggcactgcagatggcaaatcccaaggaagccctgctaaaggtcgtgttgctt 334
             || || |||  ||||||||||||||| ||    |||||| |||||| ||||| ||| |
Sbjct: 392 atggcggtggctttgcagatggcaaatcgca---cagccctactaaagctcgtggtgcat 448

                                                                       
Query: 335 acaaagatggaaaacaattttacccaaacgagtcctcagagtcgccttattttggttcgt 394
           |||| ||||| |||||||  || ||||||||||| || |||||||| |||||||| || |
Sbjct: 449 acaaggatggtaaacaatcatatccaaacgagtcatcggagtcgccatattttggctctt 508

                        
Query: 395 ctgtgcattacgg 407
           |||||||||||||
Sbjct: 509 ctgtgcattacgg 521



 Score =  113 bits (57), Expect = 7e-22
 Identities = 75/81 (92%)
 Strand = Plus / Plus

                                                                       
Query: 484 gatggctccctggctaccagaggtgattggtggcaaggttcactgtactactaaatactt 543
           |||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||
Sbjct: 604 gatggctccctggctaccagaggtgattggtggcaaggttcactctattactaagtactt 663

                                
Query: 544 tgcagtggactctcctattgt 564
           ||||| || ||||||| ||||
Sbjct: 664 tgcagagggctctccttttgt 684



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 49/52 (94%)
 Strand = Plus / Plus

                                                               
Query: 24  ccgacccgcgccgccgcctataacgaccacttcacgtggcctatccttctcc 75
           |||| ||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 54  ccgagccgcgccgccgcctataacgaccacttcacgtgccctatctttctcc 105
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>gb|AC111016.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1651_D06,
            complete sequence
          Length = 145323

 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 101/120 (84%), Gaps = 3/120 (2%)
 Strand = Plus / Minus

                                                                        
Query: 288  tgcagatggcaaatcccaaggaagccctgctaaaggtcgtgttgcttacaaagatggaaa 347
            ||||||||||||||| ||    |||||| |||||| ||||| ||| ||||| ||||| ||
Sbjct: 3480 tgcagatggcaaatcgca---cagccctactaaagctcgtggtgcatacaaggatggtaa 3424

                                                                        
Query: 348  acaattttacccaaacgagtcctcagagtcgccttattttggttcgtctgtgcattacgg 407
            |||||  || ||||||||||| || |||||||| |||||||| || ||||||||||||||
Sbjct: 3423 acaatcatatccaaacgagtcatcggagtcgccatattttggctcttctgtgcattacgg 3364



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 49/52 (94%)
 Strand = Plus / Minus

                                                                
Query: 24   ccgacccgcgccgccgcctataacgaccacttcacgtggcctatccttctcc 75
            |||| ||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 4427 ccgagccgcgccgccgcctataacgaccacttcacgtgccctatctttctcc 4376



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 39/39 (100%)
 Strand = Plus / Minus

                                                   
Query: 484  gatggctccctggctaccagaggtgattggtggcaaggt 522
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 3194 gatggctccctggctaccagaggtgattggtggcaaggt 3156



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                        
Query: 231  ggacctgtacacgatgctgaacaagcagaaccccaaagggcaga 274
            |||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 3869 ggacctgtacgcgatgctgaacaagcagaactccaaagggcaga 3826



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                          
Query: 155  cggcggcggggaacggatacttcagctccgtcttctccgcgtcgcc 200
            ||||||||| |||||| ||||||||| |||||||||||||||||||
Sbjct: 4209 cggcggcggcgaacgggtacttcagcaccgtcttctccgcgtcgcc 4164
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 101/120 (84%), Gaps = 3/120 (2%)
 Strand = Plus / Minus

                                                                            
Query: 288      tgcagatggcaaatcccaaggaagccctgctaaaggtcgtgttgcttacaaagatggaaa 347
                ||||||||||||||| ||    |||||| |||||| ||||| ||| ||||| ||||| ||
Sbjct: 22160215 tgcagatggcaaatcgca---cagccctactaaagctcgtggtgcatacaaggatggtaa 22160159

                                                                            
Query: 348      acaattttacccaaacgagtcctcagagtcgccttattttggttcgtctgtgcattacgg 407
                |||||  || ||||||||||| || |||||||| |||||||| || ||||||||||||||
Sbjct: 22160158 acaatcatatccaaacgagtcatcggagtcgccatattttggctcttctgtgcattacgg 22160099



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 49/52 (94%)
 Strand = Plus / Minus

                                                                    
Query: 24       ccgacccgcgccgccgcctataacgaccacttcacgtggcctatccttctcc 75
                |||| ||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 22161162 ccgagccgcgccgccgcctataacgaccacttcacgtgccctatctttctcc 22161111



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 39/39 (100%)
 Strand = Plus / Minus

                                                       
Query: 484      gatggctccctggctaccagaggtgattggtggcaaggt 522
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 22159929 gatggctccctggctaccagaggtgattggtggcaaggt 22159891



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                            
Query: 231      ggacctgtacacgatgctgaacaagcagaaccccaaagggcaga 274
                |||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 22160604 ggacctgtacgcgatgctgaacaagcagaactccaaagggcaga 22160561



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                              
Query: 155      cggcggcggggaacggatacttcagctccgtcttctccgcgtcgcc 200
                ||||||||| |||||| ||||||||| |||||||||||||||||||
Sbjct: 22160944 cggcggcggcgaacgggtacttcagcaccgtcttctccgcgtcgcc 22160899



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 143      ccaccggatcggcggcggcgg 163
                |||||||||||||||||||||
Sbjct: 26723808 ccaccggatcggcggcggcgg 26723828



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 143      ccaccggatcggcggcggcgg 163
                |||||||||||||||||||||
Sbjct: 23671993 ccaccggatcggcggcggcgg 23672013
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>gb|AC165428.1| Strongylocentrotus purpuratus BAC clone contig containing Eve, the hox
             cluster, cholinesterase, and COLP5alpha genes, complete
             sequence
          Length = 796348

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 620   tcatcaggcataaaaagaagaag 642
             |||||||||||||||||||||||
Sbjct: 81609 tcatcaggcataaaaagaagaag 81631
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>ref|XM_369167.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
           (MG00077.4) partial mRNA
          Length = 1638

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 112 gaggccaagaagtcgccgcccacccc 137
           ||||||||||||||| ||||||||||
Sbjct: 706 gaggccaagaagtcggcgcccacccc 731
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>gb|AC140389.3| Mus musculus BAC clone RP24-202H2 from chromosome 18, complete sequence
          Length = 169195

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 207   aaatccaagagacgccaggcag 228
             ||||||||||||||||||||||
Sbjct: 36902 aaatccaagagacgccaggcag 36881
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>gb|AC158924.6| Mus musculus chromosome 18, clone RP23-109P21, complete sequence
          Length = 254968

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 207   aaatccaagagacgccaggcag 228
             ||||||||||||||||||||||
Sbjct: 21395 aaatccaagagacgccaggcag 21416
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>gb|AC104713.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_G11,
              complete sequence
          Length = 115808

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 143    ccaccggatcggcggcggcgg 163
              |||||||||||||||||||||
Sbjct: 104805 ccaccggatcggcggcggcgg 104825
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>gb|AE010368.1| Methanopyrus kandleri AV19 section 67 of 157 of the complete genome
          Length = 12015

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 581  ggagcaggtcgagctggtagg 601
            |||||||||||||||||||||
Sbjct: 7758 ggagcaggtcgagctggtagg 7778
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>gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1288_A07,
            complete sequence
          Length = 122120

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 143  ccaccggatcggcggcggcgg 163
            |||||||||||||||||||||
Sbjct: 5747 ccaccggatcggcggcggcgg 5767
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>gb|AC118289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0099O15, complete sequence
          Length = 137357

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 143   ccaccggatcggcggcggcgg 163
             |||||||||||||||||||||
Sbjct: 61998 ccaccggatcggcggcggcgg 62018
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>gb|AC162789.4| Mus musculus chromosome 1, clone RP24-323I23, complete sequence
          Length = 170236

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 5      gcgagctcctccctctcctcc 25
              |||||||||||||||||||||
Sbjct: 137670 gcgagctcctccctctcctcc 137690
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>emb|AL122058.19|HSJ813D12 Human DNA sequence from clone RP4-813D12 on chromosome 20 Contains the
             5' end of the BMP7 gene for bone morphogenetic protein 7
             (osteogenic protein 1), two novel genes and a CpG island,
             complete sequence
          Length = 101473

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 268   gggcagagcggtgggggcactgcag 292
             |||||||||||||||||| ||||||
Sbjct: 59628 gggcagagcggtgggggctctgcag 59652
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>emb|CR378665.1| Photobacterium profundum SS9; segment 3/12
          Length = 347213

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 320    aaggtcgtgttgcttacaaag 340
              |||||||||||||||||||||
Sbjct: 168250 aaggtcgtgttgcttacaaag 168270
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>emb|BX294128.19| Zebrafish DNA sequence from clone DKEYP-35F12 in linkage group 10,
             complete sequence
          Length = 160042

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 345   aaaacaattttacccaaacga 365
             |||||||||||||||||||||
Sbjct: 19884 aaaacaattttacccaaacga 19864
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>gb|AC153928.5| Mus musculus 6 BAC RP23-66O20 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 241211

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 337   aaagatggaaaacaattttac 357
             |||||||||||||||||||||
Sbjct: 61428 aaagatggaaaacaattttac 61408
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 633     aaagaagaagtcatagtgggg 653
               |||||||||||||||||||||
Sbjct: 3720270 aaagaagaagtcatagtgggg 3720250
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>gb|AC153612.6| Mus musculus 6 BAC RP23-435I4 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 197401

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 337   aaagatggaaaacaattttac 357
             |||||||||||||||||||||
Sbjct: 34739 aaagatggaaaacaattttac 34759
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>emb|BX005263.10| Mouse DNA sequence from clone RP23-395K13 on chromosome X, complete
           sequence
          Length = 175998

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 341 atggaaaacaattttacccaa 361
           |||||||||||||||||||||
Sbjct: 357 atggaaaacaattttacccaa 337
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>emb|BX119978.6| Mouse DNA sequence from clone RP23-354H3 on chromosome X, complete
             sequence
          Length = 72115

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 341   atggaaaacaattttacccaa 361
             |||||||||||||||||||||
Sbjct: 70472 atggaaaacaattttacccaa 70452
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>dbj|AK101373.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033035N15, full
           insert sequence
          Length = 1783

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 143 ccaccggatcggcggcggcgg 163
           |||||||||||||||||||||
Sbjct: 54  ccaccggatcggcggcggcgg 74
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>emb|CR388132.9| Zebrafish DNA sequence from clone DKEY-23A23 in linkage group 4,
             complete sequence
          Length = 206525

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 341   atggaaaacaattttacccaaacga 365
             |||||||| ||||||||||||||||
Sbjct: 63894 atggaaaataattttacccaaacga 63918
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>dbj|AK060408.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-D07, full
           insert sequence
          Length = 1778

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 143 ccaccggatcggcggcggcgg 163
           |||||||||||||||||||||
Sbjct: 50  ccaccggatcggcggcggcgg 70
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 149   gatcggcggcggcggggaacg 169
             |||||||||||||||||||||
Sbjct: 60488 gatcggcggcggcggggaacg 60468
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>gb|BC105767.1| Rattus norvegicus xylosyltransferase II, mRNA (cDNA clone MGC:124608
            IMAGE:7930580), complete cds
          Length = 3375

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 487  ggctccctggctaccagagg 506
            ||||||||||||||||||||
Sbjct: 3146 ggctccctggctaccagagg 3127
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>ref|XM_467446.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1389

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ctccgacccgcgccgccgcc 41
          ||||||||||||||||||||
Sbjct: 74 ctccgacccgcgccgccgcc 93
to top
>ref|XM_506936.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1479_B12.9 mRNA
          Length = 1503

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 22  ctccgacccgcgccgccgcc 41
           ||||||||||||||||||||
Sbjct: 91  ctccgacccgcgccgccgcc 110
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>ref|NM_189419.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 426

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 145 accggatcggcggcggcggg 164
           ||||||||||||||||||||
Sbjct: 306 accggatcggcggcggcggg 325
to top
>ref|NM_022296.2| Rattus norvegicus xylosyltransferase II (Xylt2), mRNA
          Length = 3375

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 487  ggctccctggctaccagagg 506
            ||||||||||||||||||||
Sbjct: 3146 ggctccctggctaccagagg 3127
to top
>gb|AY596294.1| Haloarcula marismortui ATCC 43049 plasmid pNG500, complete sequence
          Length = 132678

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    tggacctgtacacgatgctg 249
              ||||||||||||||||||||
Sbjct: 101955 tggacctgtacacgatgctg 101936
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>gb|AC124083.14| Mus musculus chromosome 5, clone RP24-400H4, complete sequence
          Length = 172336

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 520    ggttcactgtactactaaatactt 543
              ||||||||||||| ||||||||||
Sbjct: 154484 ggttcactgtacttctaaatactt 154461
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>gb|AE013198.1| Thermoanaerobacter tengcongensis MB4, section 225 of 244 of the
            complete genome
          Length = 10429

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 566  aacaaggaataaaaaggagc 585
            ||||||||||||||||||||
Sbjct: 4830 aacaaggaataaaaaggagc 4811
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 218     acgccaggcagatggacctg 237
               ||||||||||||||||||||
Sbjct: 3226559 acgccaggcagatggacctg 3226540
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>gb|AC142167.4| Mus musculus BAC clone RP24-117F4 from chromosome 3, complete sequence
          Length = 190937

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 350    aattttacccaaacgagtcc 369
              ||||||||||||||||||||
Sbjct: 130796 aattttacccaaacgagtcc 130777
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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 329     ttgcttacaaagatggaaaa 348
               ||||||||||||||||||||
Sbjct: 6341335 ttgcttacaaagatggaaaa 6341316
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 2       agtgcgagctcctccctctcctcc 25
               |||||||||||| |||||||||||
Sbjct: 3841091 agtgcgagctcccccctctcctcc 3841114
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>gb|AF040570.3| Amycolatopsis mediterranei rifamycin biosynthetic gene cluster
          Length = 109528

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 140   cctccaccggatcggcggcggcggggaa 167
             |||||| ||||||||| |||||||||||
Sbjct: 68042 cctccagcggatcggctgcggcggggaa 68069
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>gb|AC125176.4| Mus musculus BAC clone RP24-574O24 from chromosome 3, complete sequence
          Length = 162693

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 350    aattttacccaaacgagtcc 369
              ||||||||||||||||||||
Sbjct: 108451 aattttacccaaacgagtcc 108432
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>emb|AL139133.8| Human DNA sequence from clone RP11-185C19 on chromosome 1q31.1-31.3
            Contains the 3' end of the HRPT2 gene for
            hyperparathyroidism 2 (with jaw tumor), complete sequence
          Length = 19720

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 531  ctactaaatactttgcagtg 550
            ||||||||||||||||||||
Sbjct: 6270 ctactaaatactttgcagtg 6289
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>emb|AJ223012.1|AMM223012 Amycolatopsis mediterranei genes encoding rifamycin polyketide
             synthases, ORFs 1 to 5
          Length = 53784

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 140   cctccaccggatcggcggcggcggggaa 167
             |||||| ||||||||| |||||||||||
Sbjct: 51637 cctccagcggatcggctgcggcggggaa 51664
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>gb|AC164579.5| Mus musculus 6 BAC RP23-384P24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 214578

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 504    aggtgattggtggcaaggtt 523
              ||||||||||||||||||||
Sbjct: 169249 aggtgattggtggcaaggtt 169230
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>dbj|AK126211.1| Homo sapiens cDNA FLJ44223 fis, clone THYMU3006118, highly  similar
            to Homo sapiens molybdenum cofactor synthesis 2 (MOCS2)
          Length = 2848

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 334  tacaaagatggaaaacaatt 353
            ||||||||||||||||||||
Sbjct: 1355 tacaaagatggaaaacaatt 1336
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>gb|AC010377.7| Homo sapiens chromosome 5 clone CTD-2060J20, complete sequence
          Length = 139476

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 334   tacaaagatggaaaacaatt 353
             ||||||||||||||||||||
Sbjct: 90651 tacaaagatggaaaacaatt 90632
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>gb|AC112200.3| Homo sapiens chromosome 5 clone RP11-54F2, complete sequence
          Length = 107502

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 12    cctccctctcctccgacccgcgcc 35
             ||||| ||||||||||||||||||
Sbjct: 60337 cctccgtctcctccgacccgcgcc 60314
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>gb|AC158662.7| Mus musculus 6 BAC RP23-20K24 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 250218

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 504   aggtgattggtggcaaggtt 523
             ||||||||||||||||||||
Sbjct: 97932 aggtgattggtggcaaggtt 97913
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>gb|AC008966.9| Homo sapiens chromosome 5 clone CTD-2366F13, complete sequence
          Length = 174831

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 334   tacaaagatggaaaacaatt 353
             ||||||||||||||||||||
Sbjct: 41662 tacaaagatggaaaacaatt 41643
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>gb|AC099030.1| Drosophila melanogaster, chromosome 2R, region 53F-54X, BAC clone
             BACR09M08, complete sequence
          Length = 179283

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 314   ctgctaaaggtcgtgttgct 333
             ||||||||||||||||||||
Sbjct: 34162 ctgctaaaggtcgtgttgct 34143
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>gb|AC099021.1| Drosophila melanogaster, chromosome 2R, region 53E-54X, BAC clone
              BACR03E17, complete sequence
          Length = 160338

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 314    ctgctaaaggtcgtgttgct 333
              ||||||||||||||||||||
Sbjct: 138811 ctgctaaaggtcgtgttgct 138792
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>emb|BX663612.9| Zebrafish DNA sequence from clone DKEY-24M14 in linkage group 7,
             complete sequence
          Length = 181415

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     gagctcctccctctcctccg 26
             ||||||||||||||||||||
Sbjct: 64319 gagctcctccctctcctccg 64300
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>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0091P11,
              complete sequence
          Length = 132151

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 2      agtgcgagctcctccctctcctcc 25
              |||||||||||| |||||||||||
Sbjct: 119715 agtgcgagctcccccctctcctcc 119738
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 145      accggatcggcggcggcggg 164
                ||||||||||||||||||||
Sbjct: 10292833 accggatcggcggcggcggg 10292814
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 2       agtgcgagctcctccctctcctcc 25
               |||||||||||| |||||||||||
Sbjct: 3841202 agtgcgagctcccccctctcctcc 3841225
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 22       ctccgacccgcgccgccgcc 41
                ||||||||||||||||||||
Sbjct: 29569529 ctccgacccgcgccgccgcc 29569548
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 145      accggatcggcggcggcggg 164
                ||||||||||||||||||||
Sbjct: 42673018 accggatcggcggcggcggg 42672999
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>gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0015N19, complete sequence
          Length = 168430

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     agtgcgagctcctccctctcctcc 25
             |||||||||||| |||||||||||
Sbjct: 47564 agtgcgagctcccccctctcctcc 47587
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>emb|AL731578.2|OSJN00229 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0017P10,
              complete sequence
          Length = 175563

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 145    accggatcggcggcggcggg 164
              ||||||||||||||||||||
Sbjct: 117048 accggatcggcggcggcggg 117029
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>gb|AC126415.9| Mus musculus chromosome 5, clone RP24-476K21, complete sequence
          Length = 168525

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 520   ggttcactgtactactaaatactt 543
             ||||||||||||| ||||||||||
Sbjct: 42720 ggttcactgtacttctaaatactt 42697
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>dbj|AP003448.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:OJ1656_A11
          Length = 148887

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 145  accggatcggcggcggcggg 164
            ||||||||||||||||||||
Sbjct: 5783 accggatcggcggcggcggg 5764
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>ref|XM_342255.2| PREDICTED: Rattus norvegicus similar to Restin (LOC361953), mRNA
          Length = 2543

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 15   ccctctcctccgacccgcgccgcc 38
            |||||||||||||||| |||||||
Sbjct: 1412 ccctctcctccgacccccgccgcc 1435
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>gb|DQ163919.1| Bacteriophage PA16, complete genome
          Length = 72010

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   cttcagctccgtcttctccg 193
             ||||||||||||||||||||
Sbjct: 25473 cttcagctccgtcttctccg 25492
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>gb|DQ163918.1| Bacteriophage PA7, complete genome
          Length = 72009

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   cttcagctccgtcttctccg 193
             ||||||||||||||||||||
Sbjct: 25472 cttcagctccgtcttctccg 25491
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>emb|BX000536.7| Zebrafish DNA sequence from clone CH211-10C6 in linkage group 7,
             complete sequence
          Length = 199752

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 596   ggtaggctgtagagttgaca 615
             ||||||||||||||||||||
Sbjct: 80706 ggtaggctgtagagttgaca 80725
to top
>dbj|AP004165.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1479_B12
          Length = 127089

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    ctccgacccgcgccgccgcc 41
             ||||||||||||||||||||
Sbjct: 27250 ctccgacccgcgccgccgcc 27269
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>dbj|AK104317.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-C03,
          full insert sequence
          Length = 1389

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ctccgacccgcgccgccgcc 41
          ||||||||||||||||||||
Sbjct: 74 ctccgacccgcgccgccgcc 93
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>dbj|AK071251.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087H21, full
           insert sequence
          Length = 1502

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 22  ctccgacccgcgccgccgcc 41
           ||||||||||||||||||||
Sbjct: 90  ctccgacccgcgccgccgcc 109
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>emb|CR847514.13| Zebrafish DNA sequence from clone DKEYP-11D6 in linkage group 3, complete
              sequence
          Length = 165569

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 607    gagttgacatgagtcatcag 626
              ||||||||||||||||||||
Sbjct: 102529 gagttgacatgagtcatcag 102510
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>emb|AJ295749.2|RNO295749 Rattus norvegicus mRNA for xylosyltransferase II (XT-II gene)
          Length = 2806

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 487  ggctccctggctaccagagg 506
            ||||||||||||||||||||
Sbjct: 2688 ggctccctggctaccagagg 2669
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>gb|AE003805.3| Drosophila melanogaster chromosome 2R, section 45 of 73 of the complete
              sequence
          Length = 272948

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 314    ctgctaaaggtcgtgttgct 333
              ||||||||||||||||||||
Sbjct: 152659 ctgctaaaggtcgtgttgct 152640
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>emb|AL837516.14| Mouse DNA sequence from clone RP23-234L8 on chromosome 2, complete
              sequence
          Length = 202046

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 337    aaagatggaaaacaatttta 356
              ||||||||||||||||||||
Sbjct: 100512 aaagatggaaaacaatttta 100531
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>gb|AC004641.1|AC004641 Drosophila melanogaster DNA sequence (P1s DS07321 (D175), DS05993
             (D241), and DS06306 (D173)), complete sequence
          Length = 154985

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 314   ctgctaaaggtcgtgttgct 333
             ||||||||||||||||||||
Sbjct: 71635 ctgctaaaggtcgtgttgct 71654
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 146    ccggatcggcggcggcgggg 165
              ||||||||||||||||||||
Sbjct: 644987 ccggatcggcggcggcgggg 645006
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>gb|M13094.1|RATB044G1 Rat brain 0-44 gene, segment 1
          Length = 1328

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 5  gcgagctcctccctctcctc 24
          ||||||||||||||||||||
Sbjct: 73 gcgagctcctccctctcctc 92
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>dbj|AB015178.1| Streptomyces cyaneus plasmid pSA1.1 gene for Rep protein, complete
           cds
          Length = 1620

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 189 ctccgcgtcgcctgcggcaa 208
           ||||||||||||||||||||
Sbjct: 322 ctccgcgtcgcctgcggcaa 341
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>dbj|AB010724.1| Streptomyces cyaneus plasmid pSA1.1, complete sequence
          Length = 9014

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 189  ctccgcgtcgcctgcggcaa 208
            ||||||||||||||||||||
Sbjct: 5975 ctccgcgtcgcctgcggcaa 5994


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,653,866
Number of Sequences: 3902068
Number of extensions: 6653866
Number of successful extensions: 175050
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 173947
Number of HSP's gapped (non-prelim): 1102
length of query: 656
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 633
effective length of database: 17,143,297,704
effective search space: 10851707446632
effective search space used: 10851707446632
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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