ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd23e14 |
|---|---|
| Clone Library Name | barley_pub |
>BSPA_POPDE (Q07469) Bark storage protein A precursor| Length = 312 Score = 89.0 bits (219), Expect(2) = 4e-18 Identities = 57/178 (32%), Positives = 91/178 (51%), Gaps = 2/178 (1%) Frame = +3 Query: 36 LEGQSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWGIAGNANEDLQI-GDVTIPEYWA 212 L G S+V V TG +N T Q+LL F + G++++G AG+ ++ + GDV++P+ A Sbjct: 69 LNGSSIVYVKTGSPSVNMATTLQILLVRFNIHGVIYFGNAGSLDKKTMVPGDVSVPQAVA 128 Query: 213 HVSLWNWQRFGDGKDNELPLEAAGDYTREYGALNFSDYTVGQSNPALSANLLNSIWYQPE 392 +WNW++FG E G L F D+ + P NLL ++ Y+ Sbjct: 129 FTGVWNWKKFGS----------------EKGKLVFGDF----NYPENGENLLGTVEYEKI 168 Query: 393 EIFPKSGEPEVRQHAFWVPASKRYY-ALAKKLEGMELPACVNATTCLPRAPRVTRVSK 563 ++F S P + FW+P +K +Y A + L+ M+L C + CLP P+V SK Sbjct: 169 KMFSPSEAP---KEVFWLPITKSWYNAATEALKDMKLRKCY-SDECLPGKPKVVFGSK 222 Score = 21.6 bits (44), Expect(2) = 4e-18 Identities = 9/12 (75%), Positives = 9/12 (75%) Frame = +1 Query: 1 VDIQGRRFRFGT 36 VDI GRRF GT Sbjct: 57 VDIAGRRFHSGT 68
>BSPB_POPDE (Q09117) Bark storage protein B precursor| Length = 312 Score = 81.6 bits (200), Expect(2) = 6e-16 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 2/178 (1%) Frame = +3 Query: 36 LEGQSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWGIAGNANEDLQI-GDVTIPEYWA 212 L G S+V V TG +N T Q+LL+ F + G++++G AG+ ++ + GDV++P+ A Sbjct: 69 LNGSSIVYVKTGSHSVNMATTLQILLARFSIHGVIYFGNAGSLDKKTMVPGDVSVPQAVA 128 Query: 213 HVSLWNWQRFGDGKDNELPLEAAGDYTREYGALNFSDYTVGQSNPALSANLLNSIWYQPE 392 + NW++F E G L F D+ + P NLL ++ Y+ Sbjct: 129 FTGVCNWKKF----------------RSEKGKLVFGDF----NYPENGENLLGTVEYEKI 168 Query: 393 EIFPKSGEPEVRQHAFWVPASKRYY-ALAKKLEGMELPACVNATTCLPRAPRVTRVSK 563 ++F S P + FW+P +K +Y A + L+ M+L C + CLP P+V SK Sbjct: 169 KMFSPSEAP---KEVFWLPITKSWYNAATEALKDMKLRKCY-SDECLPGEPKVVFGSK 222 Score = 21.6 bits (44), Expect(2) = 6e-16 Identities = 9/12 (75%), Positives = 9/12 (75%) Frame = +1 Query: 1 VDIQGRRFRFGT 36 VDI GRRF GT Sbjct: 57 VDIAGRRFHSGT 68
>MTNN_MYCTU (P67656) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 255 Score = 42.4 bits (98), Expect = 0.001 Identities = 20/56 (35%), Positives = 31/56 (55%) Frame = +3 Query: 36 LEGQSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWGIAGNANEDLQIGDVTIPE 203 L+ VV+ G+ +N GLT +L F + IV G+AG + +L IGD+ I + Sbjct: 40 LDAHRVVLAAAGMGKVNTGLTATLLADRFGCRTIVFTGVAGGLDPELCIGDIVIAD 95
>MTNN_MYCBO (P67657) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 255 Score = 42.4 bits (98), Expect = 0.001 Identities = 20/56 (35%), Positives = 31/56 (55%) Frame = +3 Query: 36 LEGQSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWGIAGNANEDLQIGDVTIPE 203 L+ VV+ G+ +N GLT +L F + IV G+AG + +L IGD+ I + Sbjct: 40 LDAHRVVLAAAGMGKVNTGLTATLLADRFGCRTIVFTGVAGGLDPELCIGDIVIAD 95
>Y2293_MYCTU (Q50673) Hypothetical protein Rv2293c/MT2350 precursor| Length = 246 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 6/72 (8%) Frame = +3 Query: 12 RAKVSLWNLEGQSVVMVMTGLSMLNAGLTTQMLLSLF------RVKGIVHWGIAGNANED 173 R + L ++ G+ V++ MTG+ ++NA TT+ + F + ++ G+AG A Sbjct: 68 RRRYYLGSISGKKVIVAMTGIGLVNATNTTETAFARFTCASSIAIAAVMFSGVAGGAGR- 126 Query: 174 LQIGDVTIPEYW 209 IGDV IP W Sbjct: 127 TSIGDVAIPARW 138
>MTNN_BUCAI (P57306) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 232 Score = 41.6 bits (96), Expect = 0.002 Identities = 17/62 (27%), Positives = 37/62 (59%) Frame = +3 Query: 18 KVSLWNLEGQSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWGIAGNANEDLQIGDVTI 197 K+ + + V ++ +G+ ++A + T +L+ L++ I++ G AG+ L+IGD+ I Sbjct: 32 KIYIGKFKSHDVFLIKSGIGKVSASVATMILIDLYKPDTIINSGSAGSLQSFLKIGDIII 91 Query: 198 PE 203 P+ Sbjct: 92 PK 93
>MTNN_BUCAP (O51931) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 235 Score = 40.4 bits (93), Expect = 0.003 Identities = 16/51 (31%), Positives = 36/51 (70%) Frame = +3 Query: 51 VVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWGIAGNANEDLQIGDVTIPE 203 + ++++G+ ++A ++T + ++LF+ I++ G AG+ N L+IGD+ IP+ Sbjct: 43 IFLILSGIGKVSASMSTTISINLFQPDFIINSGSAGSLNACLKIGDIIIPK 93
>MTNN_TREPA (P96122) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 269 Score = 38.5 bits (88), Expect = 0.013 Identities = 20/49 (40%), Positives = 31/49 (63%) Frame = +3 Query: 51 VVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWGIAGNANEDLQIGDVTI 197 VV V G+ +NA L TQ+L+S F + +++ GIAG +E L + DV + Sbjct: 42 VVYVCGGVGKVNAALCTQLLISEFGARVLINTGIAGALDERLCVFDVLV 90
>DEOD_LACLC (O32810) Purine nucleoside phosphorylase deoD-type (EC 2.4.2.1)| (PNP) Length = 234 Score = 34.7 bits (78), Expect = 0.19 Identities = 18/61 (29%), Positives = 34/61 (55%) Frame = +3 Query: 39 EGQSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWGIAGNANEDLQIGDVTIPEYWAHV 218 +G V ++ TG+ + + + L++ + VK ++ G AG+ NED+ I D+ I + A Sbjct: 54 KGHRVSVMGTGMGIPSISIYANELITEYGVKRLIRVGTAGSVNEDVHIRDLVIGQAAATT 113 Query: 219 S 221 S Sbjct: 114 S 114
>DEOD_LACLA (Q9CH10) Purine nucleoside phosphorylase deoD-type (EC 2.4.2.1)| (PNP) Length = 234 Score = 34.7 bits (78), Expect = 0.19 Identities = 18/61 (29%), Positives = 34/61 (55%) Frame = +3 Query: 39 EGQSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWGIAGNANEDLQIGDVTIPEYWAHV 218 +G V ++ TG+ + + + L++ + VK ++ G AG+ NED+ I D+ I + A Sbjct: 54 KGHRVSVMGTGMGIPSISIYANELITEYGVKRLIRVGTAGSVNEDVHIRDLVIGQAAATT 113 Query: 219 S 221 S Sbjct: 114 S 114
>NIA1_BRANA (P39867) Nitrate reductase [NADH], clone PBNBR1405 (EC 1.7.1.1)| (NR) Length = 911 Score = 34.7 bits (78), Expect = 0.19 Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 5/109 (4%) Frame = +3 Query: 3 GHPRAKVSLWNLEGQSVVMVMTGLSMLNAGLTTQMLLSLFRVKGI-VHWGIAGNANEDLQ 179 G P+A+ S W++E +TGL AGLT + L+S F + V AGN ++ Sbjct: 148 GVPKAEWSDWSVE-------VTGLVKRPAGLTMEQLISEFPSREFPVTLVCAGNRRKEQN 200 Query: 180 IGDVTIPEYW----AHVSLWNWQRFGDGKDNELPLEAAGDYTREYGALN 314 + TI W SLW D L G Y++ GALN Sbjct: 201 MVKQTIGFNWGSAGVSTSLWRGVALSD------VLRRCGVYSKRGGALN 243
>C71BC_ARATH (Q9ZU07) Cytochrome P450 71B12 (EC 1.14.-.-)| Length = 496 Score = 31.6 bits (70), Expect = 1.6 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Frame = +3 Query: 120 FRVKGIVHWGIAGNANEDLQIGDVTIP-EYWAHVSLWNWQRFGD-GKDNELPL-EAAGDY 290 FR+ +V I A++D++IG IP + W HV++W R + KD E + E D Sbjct: 356 FRINPLVPLLIPREASKDVKIGGYNIPKKTWIHVNIWAIHRNPNVWKDPEAFIPERFMDS 415 Query: 291 TREYGALNF 317 +Y LNF Sbjct: 416 QIDYKGLNF 424
>MTNN_HELPJ (Q9ZMY2) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 230 Score = 31.2 bits (69), Expect = 2.1 Identities = 12/51 (23%), Positives = 32/51 (62%) Frame = +3 Query: 45 QSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWGIAGNANEDLQIGDVTI 197 + +++ + + +++ LTT ++ F V+ ++ G+AG+ +DL+I D+ + Sbjct: 43 KEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLV 93
>MTNN_HELPY (O24915) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 231 Score = 31.2 bits (69), Expect = 2.1 Identities = 12/51 (23%), Positives = 32/51 (62%) Frame = +3 Query: 45 QSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWGIAGNANEDLQIGDVTI 197 + +++ + + +++ LTT ++ F V+ ++ G+AG+ +DL+I D+ + Sbjct: 44 KEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLV 94
>C71BB_ARATH (P58049) Cytochrome P450 71B11 (EC 1.14.-.-)| Length = 496 Score = 30.8 bits (68), Expect = 2.8 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Frame = +3 Query: 120 FRVKGIVHWGIAGNANEDLQIGDVTIP-EYWAHVSLWNWQRFGD-GKDNELPL-EAAGDY 290 FRV +V I A++D++IG IP + W HV++W R + KD E + E D Sbjct: 356 FRVLPLVPLLIPREASKDVKIGGYDIPKKTWIHVNIWAIHRNPNVWKDPEAFIPERFMDN 415 Query: 291 TREYGALNF 317 +Y LNF Sbjct: 416 QIDYKGLNF 424
>DEOD_STRTR (Q56037) Purine nucleoside phosphorylase deoD-type (EC 2.4.2.1)| (PNP) (Fragment) Length = 216 Score = 30.4 bits (67), Expect = 3.6 Identities = 12/55 (21%), Positives = 33/55 (60%) Frame = +3 Query: 39 EGQSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWGIAGNANEDLQIGDVTIPE 203 +G+ + ++ TG+ M + + + L+ + VK ++ G AG+ NE++ + ++ + + Sbjct: 33 KGERISVMGTGMGMPSISIYARELIVDYGVKKLIRVGTAGSLNENVHVRELVLAQ 87
>PRRX2_HUMAN (Q99811) Paired mesoderm homeobox protein 2 (PRX-2) (Paired-related| homeobox protein 2) Length = 253 Score = 30.0 bits (66), Expect = 4.7 Identities = 13/19 (68%), Positives = 13/19 (68%) Frame = -2 Query: 141 GRCPSPGRGSAASGWSDQR 85 G CPSPGRGSAA QR Sbjct: 87 GECPSPGRGSAAKRKKKQR 105
>MK15_RAT (Q9Z2A6) Mitogen-activated protein kinase 15 (EC 2.7.11.24)| (Extracellular signal-regulated kinase 7) Length = 547 Score = 30.0 bits (66), Expect = 4.7 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%) Frame = +2 Query: 41 RPKRRHGHDRTEHAQ--RWSDHPDAAEPLPGEGHRPLG 148 +P+ HGHD EH + R S P P PG G RP G Sbjct: 396 KPQNGHGHD-PEHVEVRRQSSDPLYQLPPPGSGERPPG 432
>ENV_MLVAV (P03386) Env polyprotein precursor (Coat polyprotein) [Contains:| Coat protein GP70; Spike protein p15E; R protein] Length = 669 Score = 29.6 bits (65), Expect = 6.1 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 10/35 (28%) Frame = -2 Query: 396 SPPAGTRCC*GGSLIAPGCS----------VPRCS 322 SPP G CC G S PGCS PRC+ Sbjct: 96 SPPPGPPCCSGSSDSTPGCSRDCEEPLTSYTPRCN 130
>SYM_METAC (Q8TIU5) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 712 Score = 29.6 bits (65), Expect = 6.1 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 13/78 (16%) Frame = +3 Query: 138 VHWGIAGNANEDL--------QIGDVTIPEYWAHVSLWNWQRFGDGKDNELPLEAAGDYT 293 + WG+ +EDL IG + E WA + +W++F G + E+ GD T Sbjct: 242 LEWGVRFPGHEDLVVYVWVDAPIGYIAFTEEWAAQAGDSWEKFWKG-EGEIVHFIGGDIT 300 Query: 294 REY-----GALNFSDYTV 332 + LN +DY+V Sbjct: 301 YHHCIFWPAMLNGADYSV 318
>ENV_MLVRD (P11268) Env polyprotein precursor (Coat polyprotein) [Contains:| Coat protein GP76; Spike protein p15E; R protein] Length = 665 Score = 29.6 bits (65), Expect = 6.1 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 10/35 (28%) Frame = -2 Query: 396 SPPAGTRCC*GGSLIAPGCS----------VPRCS 322 SPP G CC G S PGCS PRC+ Sbjct: 96 SPPPGPPCCSGSSGSTPGCSRDCEEPLTSYTPRCN 130
>Y4JS_RHISN (P55519) Hypothetical 44.8 kDa protein y4jS| Length = 413 Score = 29.3 bits (64), Expect = 8.0 Identities = 12/48 (25%), Positives = 26/48 (54%) Frame = +3 Query: 48 SVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWGIAGNANEDLQIGDV 191 ++ + + + ++ AG+T ++LF+ K +V GI D +GD+ Sbjct: 206 AICVCLPQMGLVAAGVTAAKAITLFKPKLVVMTGICAGRKGDCDLGDI 253
>MYB_CHICK (P01103) Myb proto-oncogene protein (C-myb)| Length = 641 Score = 29.3 bits (64), Expect = 8.0 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%) Frame = +2 Query: 17 EGFALEPRR---PKRRHGHDRTEHAQRWSDHPDAAEPLPGEGHRPLG 148 EG+ E + P G ++ H ++ +P A PLPG G PLG Sbjct: 196 EGYLQESSKAGLPSATTGFQKSSHLMAFAHNPPAG-PLPGAGQAPLG 241
>MYBE_AVILE (P01105) p135Gag-Myb-Ets transforming protein [Contains:| Transforming protein v-Myb; Transforming protein v-Ets] (Fragment) Length = 669 Score = 29.3 bits (64), Expect = 8.0 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%) Frame = +2 Query: 17 EGFALEPRR---PKRRHGHDRTEHAQRWSDHPDAAEPLPGEGHRPLG 148 EG+ E + P G ++ H ++ +P A PLPG G PLG Sbjct: 11 EGYLQESSKAGLPSATTGFQKSSHLMAFAHNPPAG-PLPGAGQAPLG 56
>ICAM1_RAT (Q00238) Intercellular adhesion molecule 1 precursor (ICAM-1)| Length = 545 Score = 29.3 bits (64), Expect = 8.0 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%) Frame = -3 Query: 173 VLVGVASDAPVDD--ALHPEEAQQHLGGQTSVEHAQSCHDHDDALAFE 36 VLV V PV ++HP EA GG V + SC D + L E Sbjct: 15 VLVAVVIPGPVGAQVSIHPTEAFLPRGGSVQVNCSSSCEDENLGLGLE 62
>FLP_LACCA (P29284) Probable transcriptional regulator flp| Length = 219 Score = 29.3 bits (64), Expect = 8.0 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = +3 Query: 210 AHVSLWNWQRFGDGKDNELPLEAAGDYTREYGALNFSDYTV 332 AH L +Q +GK+ L ++ GDY E G LN ++ V Sbjct: 51 AHGKLKTYQLATNGKEQLLRVDGVGDYEGEAGLLNIANPNV 91
>MYB_AVIMB (P01104) Transforming protein Myb| Length = 382 Score = 29.3 bits (64), Expect = 8.0 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%) Frame = +2 Query: 17 EGFALEPRR---PKRRHGHDRTEHAQRWSDHPDAAEPLPGEGHRPLG 148 EG+ E + P G ++ H ++ +P A PLPG G PLG Sbjct: 125 EGYPQESSKAGPPSATTGFQKSSHLMAFAHNPPAG-PLPGAGQAPLG 170
>RL28_BUCAP (Q8KA33) 50S ribosomal protein L28| Length = 78 Score = 29.3 bits (64), Expect = 8.0 Identities = 10/26 (38%), Positives = 14/26 (53%) Frame = +3 Query: 417 PEVRQHAFWVPASKRYYALAKKLEGM 494 P ++ H FW+P KR+ L GM Sbjct: 31 PNIQYHRFWIPEEKRFIKLRISAHGM 56 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,642,961 Number of Sequences: 219361 Number of extensions: 1361962 Number of successful extensions: 5511 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 5090 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5510 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
