ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd22o24 |
|---|---|
| Clone Library Name | barley_pub |
>TM9S4_HUMAN (Q92544) Transmembrane 9 superfamily protein member 4| Length = 625 Score = 81.6 bits (200), Expect = 2e-15 Identities = 45/115 (39%), Positives = 67/115 (58%), Gaps = 5/115 (4%) Frame = +3 Query: 291 AFYLPGTFMHTYEAGETIAAKVNSLTSIETELPFSYYSLPYCKPTEGVKKSAENLGEVLM 470 AFY+PG + + + K LTS T+LP+ YYSLP+C+P++ + AENLGEVL Sbjct: 6 AFYVPGVAPINFHQNDPVEIKAVKLTSSRTQLPYEYYSLPFCQPSK-ITYKAENLGEVLR 64 Query: 471 GDQIDNSPYHFHVNTNESL-YLCTTD----PLTKEQAELLKNRARNLYQVNMILD 620 GD+I N+P+ +N+ + LC+ LT EQ+ L+ R Y V++I D Sbjct: 65 GDRIVNTPFQVLMNSEKKCEVLCSQSNKPVTLTVEQSRLVAERITEDYYVHLIAD 119
>TM9S2_MOUSE (P58021) Transmembrane 9 superfamily protein member 2 precursor| Length = 662 Score = 68.2 bits (165), Expect = 2e-11 Identities = 46/123 (37%), Positives = 64/123 (52%), Gaps = 13/123 (10%) Frame = +3 Query: 291 AFYLPGTFMHTYEAGET-------IAAKVNSLTSIETELPFSYYSLPYCKPTEGVKKSAE 449 AFYLPG + A E I VN L S+E+ LP+ Y + +C+ +EG K+ +E Sbjct: 35 AFYLPGLAPVNFCAEEKSNECKADIELFVNRLDSVESVLPYEYTAFDFCQASEG-KRPSE 93 Query: 450 NLGEVLMGDQIDNSPYHFHVNTNESLYLCTTDPLTKEQAE------LLKNRARNLYQVNM 611 NLG+VL G++I+ SPY F N E+ L T E+AE LK YQ + Sbjct: 94 NLGQVLFGERIEPSPYKFTFNKKETCKLVCTKTYNTEKAEDKQKLDFLKKSMLLNYQHHW 153 Query: 612 ILD 620 I+D Sbjct: 154 IVD 156
>TM9S2_RAT (Q66HG5) Transmembrane 9 superfamily protein member 2 precursor| Length = 663 Score = 66.6 bits (161), Expect = 6e-11 Identities = 45/124 (36%), Positives = 63/124 (50%), Gaps = 14/124 (11%) Frame = +3 Query: 291 AFYLPGTFMHTY--------EAGETIAAKVNSLTSIETELPFSYYSLPYCKPTEGVKKSA 446 AFYLPG + E I VN L S+E+ LP+ Y + +C+ +EG K+ + Sbjct: 35 AFYLPGLAPVNFCTEEKKSNECKAEIELFVNRLDSVESVLPYEYTAFDFCQASEG-KRPS 93 Query: 447 ENLGEVLMGDQIDNSPYHFHVNTNESLYLCTTDPLTKEQAE------LLKNRARNLYQVN 608 ENLG+VL G++I+ SPY F N E+ L T E+AE LK YQ + Sbjct: 94 ENLGQVLFGERIEPSPYKFTFNKEETCKLVCTKTYHTEKAEDKQKLDFLKKSMLLNYQHH 153 Query: 609 MILD 620 I+D Sbjct: 154 WIVD 157
>TM9S2_HUMAN (Q99805) Transmembrane 9 superfamily protein member 2 precursor| (p76) Length = 663 Score = 66.6 bits (161), Expect = 6e-11 Identities = 46/124 (37%), Positives = 65/124 (52%), Gaps = 14/124 (11%) Frame = +3 Query: 291 AFYLPGTFMHTY--------EAGETIAAKVNSLTSIETELPFSYYSLPYCKPTEGVKKSA 446 AFYLPG + E I VN L S+E+ LP+ Y + +C+ +EG K+ + Sbjct: 35 AFYLPGLAPVNFCDEEKKSDECKAEIELFVNRLDSVESVLPYEYTAFDFCQASEG-KRPS 93 Query: 447 ENLGEVLMGDQIDNSPYHFHVNTNESLYL-CTTDPLT-----KEQAELLKNRARNLYQVN 608 ENLG+VL G++I+ SPY F N E+ L CT T K++ E LK YQ + Sbjct: 94 ENLGQVLFGERIEPSPYKFTFNKKETCKLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHH 153 Query: 609 MILD 620 I+D Sbjct: 154 WIVD 157
>TM9S2_PONPY (Q5R8Y6) Transmembrane 9 superfamily protein member 2 precursor| Length = 663 Score = 65.1 bits (157), Expect = 2e-10 Identities = 45/123 (36%), Positives = 64/123 (52%), Gaps = 14/123 (11%) Frame = +3 Query: 294 FYLPGTFMHTY--------EAGETIAAKVNSLTSIETELPFSYYSLPYCKPTEGVKKSAE 449 FYLPG + E I VN L S+E+ LP+ Y + +C+ +EG K+ +E Sbjct: 36 FYLPGLAPVNFCDEEKKSDECKAEIELFVNRLDSVESVLPYEYTAFDFCQASEG-KRPSE 94 Query: 450 NLGEVLMGDQIDNSPYHFHVNTNESLYL-CTTDPLT-----KEQAELLKNRARNLYQVNM 611 NLG+VL G++I+ SPY F N E+ L CT T K++ E LK YQ + Sbjct: 95 NLGQVLFGERIEPSPYKFTFNKEETCKLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHW 154 Query: 612 ILD 620 I+D Sbjct: 155 IVD 157
>YEU3_YEAST (P40071) Hypothetical protein YER113C precursor| Length = 706 Score = 49.3 bits (116), Expect = 9e-06 Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 1/100 (1%) Frame = +3 Query: 324 YEAGETIAAKVNSLTSIETELPFSYYSLPY-CKPTEGVKKSAENLGEVLMGDQIDNSPYH 500 Y G+ + VN + S T+LP++YY LP+ C PT K +L E++ GD+ S Y Sbjct: 57 YRKGDPLELIVNKVESDLTQLPYAYYDLPFTCPPTMHKKPLHLSLNEIIRGDRKWESDYK 116 Query: 501 FHVNTNESLYLCTTDPLTKEQAELLKNRARNLYQVNMILD 620 + TKE + L R Y V ++D Sbjct: 117 LKFGEDNPCETLCARKTTKEGMQTLDKLVREGYVVQWLID 156
>EMP70_YEAST (P32802) Endosomal P24A protein precursor (70 kDa endomembrane| protein) (Pheromone alpha-factor transporter) (Acidic 24 kDa late endocytic intermediate component) Length = 667 Score = 48.5 bits (114), Expect = 2e-05 Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 21/131 (16%) Frame = +3 Query: 291 AFYLPGTFMHTYEAGETIAAKVNSLT--------------------SIETELPFSYYSLP 410 AFYLPG TY + I VN LT + + Y Sbjct: 22 AFYLPGVAPTTYRENDNIPLLVNHLTPSMNYQHKDEDGNNVSGDKENFLYSYDYYYNRFH 81 Query: 411 YCKPTEGVKKSAENLGEVLMGDQIDNSPYHFH-VNTNESLYLCTTDPLTKEQAELLKNRA 587 +C+P E V+K E+LG V+ GD+I NSP+ + + E LC T + + A+ + Sbjct: 82 FCQP-EKVEKQPESLGSVIFGDRIYNSPFQLNMLQEKECESLCKT-VIPGDDAKFINKLI 139 Query: 588 RNLYQVNMILD 620 +N + N ++D Sbjct: 140 KNGFFQNWLID 150
>TM9S1_PONPY (Q5R8F1) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 47.4 bits (111), Expect = 3e-05 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 1/100 (1%) Frame = +3 Query: 324 YEAGETIAAKVNSLTSIET-ELPFSYYSLPYCKPTEGVKKSAENLGEVLMGDQIDNSPYH 500 Y+AG+ + VN + + + YY LP C P E ++ + +LGEVL GD++ S Y Sbjct: 36 YKAGDPVILYVNKVGPYHNPQETYHYYQLPVCCP-EKIRHKSLSLGEVLDGDRMAESLYE 94 Query: 501 FHVNTNESLYLCTTDPLTKEQAELLKNRARNLYQVNMILD 620 N + L+ Q E L+ LY ++D Sbjct: 95 IRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVD 134
>TM9S1_HUMAN (O15321) Transmembrane 9 superfamily protein member 1 precursor| (hMP70) Length = 606 Score = 47.4 bits (111), Expect = 3e-05 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 1/100 (1%) Frame = +3 Query: 324 YEAGETIAAKVNSLTSIET-ELPFSYYSLPYCKPTEGVKKSAENLGEVLMGDQIDNSPYH 500 Y+AG+ + VN + + + YY LP C P E ++ + +LGEVL GD++ S Y Sbjct: 36 YKAGDPVILYVNKVGPYHNPQETYHYYQLPVCCP-EKIRHKSLSLGEVLDGDRMAESLYE 94 Query: 501 FHVNTNESLYLCTTDPLTKEQAELLKNRARNLYQVNMILD 620 N + L+ Q E L+ LY ++D Sbjct: 95 IRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVD 134
>TM9S1_MOUSE (Q9DBU0) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 45.4 bits (106), Expect = 1e-04 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 1/100 (1%) Frame = +3 Query: 324 YEAGETIAAKVNSLTSIET-ELPFSYYSLPYCKPTEGVKKSAENLGEVLMGDQIDNSPYH 500 Y+ G+ + VN + + + YY LP C P E ++ + +LGEVL GD++ S Y Sbjct: 36 YKPGDPVILYVNKVGPYHNPQETYHYYQLPVCCP-EKIRHKSLSLGEVLDGDRMAESLYE 94 Query: 501 FHVNTNESLYLCTTDPLTKEQAELLKNRARNLYQVNMILD 620 N + L+ Q E L+ LY ++D Sbjct: 95 IRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVD 134
>TM9S1_RAT (Q66HF2) Transmembrane 9 superfamily protein member 1 precursor| Length = 589 Score = 45.4 bits (106), Expect = 1e-04 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 1/100 (1%) Frame = +3 Query: 324 YEAGETIAAKVNSLTSIET-ELPFSYYSLPYCKPTEGVKKSAENLGEVLMGDQIDNSPYH 500 Y+ G+ + VN + + + YY LP C P E ++ + +LGEVL GD++ S Y Sbjct: 36 YKPGDPVILYVNKVGPYHNPQETYHYYQLPVCCP-EKIRHKSLSLGEVLDGDRMAESLYE 94 Query: 501 FHVNTNESLYLCTTDPLTKEQAELLKNRARNLYQVNMILD 620 N + L+ Q E L+ LY ++D Sbjct: 95 IRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVD 134
>DDX21_HUMAN (Q9NR30) Nucleolar RNA helicase 2 (EC 3.6.1.-) (Nucleolar RNA| helicase II) (Nucleolar RNA helicase Gu) (RH II/Gu) (Gu-alpha) (DEAD box protein 21) Length = 783 Score = 33.5 bits (75), Expect = 0.52 Identities = 20/56 (35%), Positives = 28/56 (50%) Frame = -1 Query: 338 FAGFVGVHEGAREVEGVGDGLQAQ*NDQQGSRDPPGRWHLGDHCSNRLLAGDQSRA 171 + GF G EG+R G DG + ++GSR P G+ G + SNR Q R+ Sbjct: 721 YGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRGQRSGGGNKSNRSQNKGQKRS 776
>SYA_STRCO (Q9KXP9) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 890 Score = 31.6 bits (70), Expect = 2.0 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 7/73 (9%) Frame = -1 Query: 389 GQLGLDGRERVDLG-------CDRFAGFVGVHEGAREVEGVGDGLQAQ*NDQQGSRDPPG 231 GQ+G GR RVD G C + V VH+G +V V G +AQ + R Sbjct: 511 GQIGDTGRIRVDTGAVIEVRDCQKPVPGVYVHKGVVQVGEVTVGAKAQASIDDRRRKAIA 570 Query: 230 RWHLGDHCSNRLL 192 R H H +++ L Sbjct: 571 RAHSATHLTHQAL 583
>FIBA_HUMAN (P02671) Fibrinogen alpha chain precursor [Contains: Fibrinopeptide| A] Length = 866 Score = 30.4 bits (67), Expect = 4.4 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 3/59 (5%) Frame = -3 Query: 615 GSC*PGT--DSAPGSS-TARPAPW*AGRWCKGTATRWC*RGSGTASCRSGHP*EPRRGS 448 GS PG+ + PGSS T A W G G+ W SGT S + +P PR GS Sbjct: 298 GSSGPGSTGNRNPGSSGTGGTATWKPGSSGPGSTGSWNSGSSGTGSTGNQNPGSPRPGS 356
>PPK_STAS1 (Q4A040) Polyphosphate kinase (EC 2.7.4.1) (Polyphosphoric acid| kinase) (ATP-polyphosphate phosphotransferase) Length = 719 Score = 30.4 bits (67), Expect = 4.4 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 20/113 (17%) Frame = +3 Query: 318 HTYEAGETIAAKVNSLTSIETELPFSYYSLP----------YCKPTEGVKKSAENLGEV- 464 H I K+NSLT + L S C GV +EN+ V Sbjct: 529 HRENGNGKIIMKMNSLTDKDIILKLFEASCAGVKVQLIIRGICCLKPGVPGISENIEVVS 588 Query: 465 LMGDQIDNSP-YHFHVNTNESLYLCTTDPLTK---EQAELL-----KNRARNL 596 ++G +++S YHFH N ++ +YL + D +T+ ++ E+L KN A+ L Sbjct: 589 IVGRFLEHSRIYHFHNNGDDIIYLSSADAMTRNMIKRVEILFPVEDKNIAKRL 641
>AZI1_HUMAN (Q9UPN4) 5-azacytidine-induced protein 1 (Pre-acrosome localization| protein 1) (Centrosomal protein of 131 kDa) (Cep131 protein) Length = 1083 Score = 29.6 bits (65), Expect = 7.5 Identities = 19/63 (30%), Positives = 31/63 (49%) Frame = -2 Query: 265 RMTSREAEIHRADGILETIAATDSLQAINQELHLRSGSRGADKEEAATWARSKHGRRSRA 86 R+ + E E +A L T+ A L+ +E+H R + A KEEA + R++H + Sbjct: 1007 RLAASEEETRQAKAELATLQARQQLEL--EEVHRRVKTALARKEEAVSSLRTQHEAAVKR 1064 Query: 85 RGH 77 H Sbjct: 1065 ADH 1067
>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)| Length = 705 Score = 29.6 bits (65), Expect = 7.5 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Frame = +2 Query: 428 RRQEECREPRRGSHG*PDRQLAVPLPRQ--HQRVAVPLHHRPAHQG 559 R+++ P RGSHG A+PL RQ Q P RP QG Sbjct: 420 RQRQRDASPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQG 465
>VE2_HPV20 (P50766) Regulatory protein E2| Length = 497 Score = 29.6 bits (65), Expect = 7.5 Identities = 18/54 (33%), Positives = 25/54 (46%) Frame = -2 Query: 163 RSGSRGADKEEAATWARSKHGRRSRARGHPPXXXXXXXXSVRPRDRGRGRASCR 2 R SR K ++ + +RS+H RSR+R P R R RGR + R Sbjct: 263 RRRSRSKSKSKSRSRSRSRHRSRSRSRSESP----RRRSRYRSRSGSRGRVALR 312
>YIF0_YEAST (P40186) Hypothetical 32.0 kDa protein in RPL34B-SYG1 intergenic| region Length = 285 Score = 29.3 bits (64), Expect = 9.8 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +3 Query: 339 TIAAKVNSLTSIETELPFSYYSLPYCKPTEGVKKSAEN 452 ++ +K+++ S+E+ PFS SL C P + VKKS E+ Sbjct: 45 SLLSKISTNPSLES--PFSSKSLLDCSPVQAVKKSLES 80 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,281,226 Number of Sequences: 219361 Number of extensions: 1483406 Number of successful extensions: 4850 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4612 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4837 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
