| Clone Name | basd23d20 |
|---|---|
| Clone Library Name | barley_pub |
>CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22| Length = 907 Score = 37.7 bits (86), Expect = 0.022 Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 7/102 (6%) Frame = -2 Query: 460 AVDRSSGITNTCLLPSGNGTRLEAPAPSRKRPRYGSAAENAARHSPRASDLSCAGVGDGE 281 +VD S ++ + PSG+ +P+P R+R S + + R + A G+ E Sbjct: 813 SVDNRSPLSRS---PSGS----RSPSPRRRRD---SPSRSPVRDRESGGRAAAAAPGNSE 862 Query: 280 RRWLR-------RTRAPKPRPIHRGRYDSSSPGIPRVKRRTE 176 R R RTR+P P P R R DSSS KRR E Sbjct: 863 ARRGRSYSRSPSRTRSPSPAPSRRRRRDSSSDASAPRKRRRE 904
>YHL1_EBV (P03181) Hypothetical protein BHLF1| Length = 660 Score = 37.0 bits (84), Expect = 0.037 Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 16/93 (17%) Frame = -2 Query: 412 GNGTRLEA-------PAPSRKRPRYGSAAENAARHS---------PRASDLSCAGVGDGE 281 G G R+ A PAPSR+ R G A + HS R+ AG GE Sbjct: 69 GGGNRVGAGRGRPGTPAPSRQSRRTGPAEQADHAHSNPTGGCSDPQRSPRTRQAGYALGE 128 Query: 280 RRWLRRTRAPKPRPIHRGRYDSSSPGIPRVKRR 182 +R P+P P + ++ + +PG PR RR Sbjct: 129 GSAGLGSRGPRPHPAFQVQWSARNPGCPRTWRR 161
>IF2_PSE14 (Q48E77) Translation initiation factor IF-2| Length = 843 Score = 32.7 bits (73), Expect = 0.69 Identities = 32/81 (39%), Positives = 37/81 (45%), Gaps = 9/81 (11%) Frame = -2 Query: 394 EAPAPSRKRPRYGSAAENA-AR--------HSPRASDLSCAGVGDGERRWLRRTRAPKPR 242 EAPAP+ P SAA +A AR PRA D + G GDGER+ AP Sbjct: 159 EAPAPAAAAPAPASAAPSADARKRDEQRRPDKPRADDRNARG-GDGERK-----NAP--- 209 Query: 241 PIHRGRYDSSSPGIPRVKRRT 179 HR +P PRV RT Sbjct: 210 --HRASVKEKAPA-PRVAPRT 227
>MKRN3_HUMAN (Q13064) Makorin-3 (Zinc finger protein 127) (RING finger protein| 63) Length = 507 Score = 32.7 bits (73), Expect = 0.69 Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 2/85 (2%) Frame = -2 Query: 394 EAP--APSRKRPRYGSAAENAARHSPRASDLSCAGVGDGERRWLRRTRAPKPRPIHRGRY 221 EAP A S P GSAAE + R + A G G W +P +RGR+ Sbjct: 158 EAPPAASSLSLPVIGSAAERGFFEAERDNADRGAAGGAGVESWADAIEFVPGQP-YRGRW 216 Query: 220 DSSSPGIPRVKRRTERLTCCGGSEL 146 +S+P P TER GS L Sbjct: 217 VASAPEAPLQSSETERKQMAVGSGL 241
>ULK1_HUMAN (O75385) Serine/threonine-protein kinase ULK1 (EC 2.7.11.1)| (Unc-51-like kinase 1) Length = 1050 Score = 31.6 bits (70), Expect = 1.5 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +2 Query: 2 RHGSPGPCTAASSPPTASPHHRASFIRP 85 RH PGPC+ A +P +P H SF P Sbjct: 787 RHLVPGPCSEAPAPELPAPGHGCSFADP 814
>LAMC3_MOUSE (Q9R0B6) Laminin gamma-3 chain precursor (Laminin 12 gamma 3| subunit) Length = 1581 Score = 31.2 bits (69), Expect = 2.0 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 6/61 (9%) Frame = +3 Query: 195 LGIPGLDESYLPR-WIG---LGFGALVLLNHLLSP--SPTPAQLRSEALGLCLAAFSAAL 356 LG+ G +E P+ ++G L +G V+L + P SP P QLR E GL L+ ++L Sbjct: 541 LGLRGGEELSAPKKFLGDQRLSYGQPVILTLQVPPGGSPPPIQLRLEGAGLALSLRPSSL 600 Query: 357 P 359 P Sbjct: 601 P 601
>TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Tara)| (Trio-associated repeat on actin) Length = 2014 Score = 31.2 bits (69), Expect = 2.0 Identities = 18/71 (25%), Positives = 27/71 (38%) Frame = -2 Query: 388 PAPSRKRPRYGSAAENAARHSPRASDLSCAGVGDGERRWLRRTRAPKPRPIHRGRYDSSS 209 P R PR ++N R +D + A E T+ PR +G + Sbjct: 491 PCAQRDNPRTSCTSQNTPRTPSTQADKTTASCSKWEHLRSACTQRDNPRTFSQGCTQKDN 550 Query: 208 PGIPRVKRRTE 176 PG P +R T+ Sbjct: 551 PGPPSPRRATQ 561
>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22| Length = 1010 Score = 31.2 bits (69), Expect = 2.0 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 11/82 (13%) Frame = -2 Query: 418 PSGNGTRLEAPAPSRKRPRYGSAAENAARHSPRASDLSCAG-----------VGDGERRW 272 P+G T PAP+R R S + + R P +D + VG+ +RR Sbjct: 921 PAGRDTGRAGPAPARGGRRNRSYSRSRTRSPPPLADAATGSRRVVSRSPSPVVGNNKRRR 980 Query: 271 LRRTRAPKPRPIHRGRYDSSSP 206 + + R R RY S SP Sbjct: 981 SYSSSRSRSRSSSRSRYRSRSP 1002
>LAMC3_HUMAN (Q9Y6N6) Laminin gamma-3 chain precursor (Laminin 12 gamma 3| subunit) Length = 1587 Score = 30.4 bits (67), Expect = 3.4 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Frame = +3 Query: 249 FGALVLLNHLLSP--SPTPAQLRSEALGLCLAAFSAALPYLGRFLEGAGASSRVPLPEGS 422 +G ++L + P SP P QLR E GL L+ ++L G ++VPL E S Sbjct: 554 YGQPLILTFRVPPGDSPLPVQLRLEGTGLALSLRHSSLSGPQDARASQGGRAQVPLQETS 613 Query: 423 RQV 431 V Sbjct: 614 EDV 616
>CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22| Length = 831 Score = 30.4 bits (67), Expect = 3.4 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Frame = -2 Query: 391 APAPSRKRPRYGSAAENAAR--HSPRASDLSCAGVGDGERRWLRRTRAPKPRPIHRGRYD 218 +P+P +R +Y + + R SD S + RR+ +R+P P P R D Sbjct: 729 SPSPPPRRRQYSDEPRSPSPPPRRRRYSDDSRSPSPPPRRRYSGDSRSPSPPPRRRYADD 788 Query: 217 SSSPGIPRVKRR 182 S SP P +RR Sbjct: 789 SRSPSPPPHRRR 800 Score = 29.3 bits (64), Expect = 7.7 Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 5/106 (4%) Frame = -2 Query: 487 VAQAISSFCAVDRSSGITNTCLLPSGNGTRLEAPAPSRK--RPRYGSAAENAARHSPR-A 317 +A A SS D SS I+++ S + T +A + SR+ R RY S + + R + Sbjct: 667 LAAAESSDSDTDSSSDISSSS--DSDSDTDSDASSYSRRSRRRRYSSDSRSPPPRRRRYS 724 Query: 316 SDLSCAGVGDGERRWLRRTRAPKPRPIHRGRY--DSSSPGIPRVKR 185 SD R++ R+P P P R RY DS SP P +R Sbjct: 725 SDSRSPSPPPRRRQYSDEPRSPSPPP-RRRRYSDDSRSPSPPPRRR 769
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 30.4 bits (67), Expect = 3.4 Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Frame = -2 Query: 415 SGNGTRLEAPAPSRKRPRYGSAAENAARHSPRASDLSCAGVGDGERRWL-RRTRAPKPRP 239 SG+ + E P R + G RHSP S E RR R+P P P Sbjct: 496 SGSSSSSEDERPKRSHVKNGEVGRRR-RHSPSRSASPSPRKRQKETSPRGRRRRSPSPPP 554 Query: 238 IHRGRYDSSSPGIPRVKRRT 179 R R S SP P +RRT Sbjct: 555 TRRRR--SPSPAPPPRRRRT 572
>PTP1_DICDI (P34137) Tyrosine-protein phosphatase 1 (EC 3.1.3.48)| (Protein-tyrosine-phosphate phosphohydrolase 1) Length = 521 Score = 30.4 bits (67), Expect = 3.4 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = -3 Query: 81 RIKLARWWGEAVGGEEAAVHGPG 13 RIK R+W E +GGE+ +++G G Sbjct: 202 RIKCDRYWPEQIGGEQFSIYGNG 224
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 30.4 bits (67), Expect = 3.4 Identities = 26/82 (31%), Positives = 32/82 (39%) Frame = -2 Query: 415 SGNGTRLEAPAPSRKRPRYGSAAENAARHSPRASDLSCAGVGDGERRWLRRTRAPKPRPI 236 SG+ + E P R + G RHS S E RR R+P P P Sbjct: 491 SGSSSSSEEERPKRSNVKNGEVGRRR-RHSHSRSPSPSPRKRQKEPSPRRRRRSPSPPPA 549 Query: 235 HRGRYDSSSPGIPRVKRRTERL 170 R R S SP P +RR+ L Sbjct: 550 RRRR--SPSPPPPPRRRRSPSL 569
>GTR2_HUMAN (P11168) Solute carrier family 2, facilitated glucose transporter| member 2 (Glucose transporter type 2, liver) Length = 524 Score = 30.4 bits (67), Expect = 3.4 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = +3 Query: 159 PQQVNLSVLRFTLGIPGLDESYLPRWIGLGFGALVLLNHLLSPSPTP 299 PQQV +S R LG+P D + ++ L +++ ++P PTP Sbjct: 34 PQQVIISHYRHVLGVPLDDRKAINNYVINSTDELPTISYSMNPKPTP 80
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 30.0 bits (66), Expect = 4.5 Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 15/94 (15%) Frame = -2 Query: 415 SGNGTRLEAPAPSRKRPRYGSAAENAARHSPRASDLSCAGVGDGE--------RRWL--- 269 SG+ + E P R + G RHSP S E +RW Sbjct: 496 SGSSSSSEDERPKRSHVKNGEVGRRR-RHSPSRSASPSPRKRQKETSPRMQMGKRWQSPV 554 Query: 268 ----RRTRAPKPRPIHRGRYDSSSPGIPRVKRRT 179 RR R+P P P R R S SP P +RRT Sbjct: 555 TKSGRRRRSPSPPPTRRRR--SPSPAPPPRRRRT 586
>SYN_DROME (Q24546) Synapsin [Contains: Synapsin-1 (Syn1) (Syn1-S); Synapsin-2| (Syn2)] Length = 1025 Score = 30.0 bits (66), Expect = 4.5 Identities = 16/55 (29%), Positives = 24/55 (43%) Frame = -2 Query: 490 YVAQAISSFCAVDRSSGITNTCLLPSGNGTRLEAPAPSRKRPRYGSAAENAARHS 326 Y A A + +SG + + G G + PS RP Y + NA++HS Sbjct: 855 YSAPAAVTTVLPGDTSGYDSNSIASQGEGLNNPSDLPSYTRPSYSRSESNASKHS 909
>CATA_RHOCA (P37743) Peroxidase/catalase (EC 1.11.1.6) (Catalase-peroxidase)| Length = 576 Score = 30.0 bits (66), Expect = 4.5 Identities = 18/59 (30%), Positives = 27/59 (45%) Frame = -2 Query: 361 YGSAAENAARHSPRASDLSCAGVGDGERRWLRRTRAPKPRPIHRGRYDSSSPGIPRVKR 185 +G+ A P A+D++ + R W R R P PR S +PG PR++R Sbjct: 271 HGNGDAKALGPDPEAADVTVRALAGRTRIWAARRRRPSPR-------GSRAPG-PRIRR 321
>CSPG5_HUMAN (O95196) Chondroitin sulfate proteoglycan 5 precursor (Neuroglycan| C) (Acidic leucine-rich EGF-like domain-containing brain protein) Length = 566 Score = 29.6 bits (65), Expect = 5.9 Identities = 18/43 (41%), Positives = 22/43 (51%) Frame = +2 Query: 302 AAQVGGSGAVPGRVLSGAAVPRALPRGCWCFQPCAVARREQAG 430 AA V SGAVP R A L +G ++P A RE+AG Sbjct: 22 AALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTREEAG 64
>ATL4L_ARATH (Q9ZT49) RING-H2 finger protein ATL4L (RING-H2 zinc finger protein| RHA3b) Length = 200 Score = 29.3 bits (64), Expect = 7.7 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 11/96 (11%) Frame = -2 Query: 535 IAMSTDVVFVF*SRTYVAQAISSFCAVDRSSGITN-TCLLPSGNGTRLEAPAPSR----- 374 +A TD+V + + ++ AV R + + T + P+ G EAP P++ Sbjct: 20 LAAETDMVVILSALLCALVCVAGLAAVARCAWLRRLTGVNPAAVG---EAPPPNKGLKKK 76 Query: 373 -----KRPRYGSAAENAARHSPRASDLSCAGVGDGE 281 + Y ++A AA A DL C+ VGDG+ Sbjct: 77 ALQALPKSTYTASASTAAA----ADDLPCSSVGDGD 108
>SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine protein kinase (EC| 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3262 Score = 29.3 bits (64), Expect = 7.7 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 24/98 (24%) Frame = -2 Query: 421 LPSGNGTRLEAPAPSRKRPRYGSAAENAARH------------------------SPRAS 314 LPS + P+P R R GS+AE+A SP A+ Sbjct: 1997 LPSPGQESPDGPSPRRPELRRGSSAESALPRVGSREPGRSLHKAASVELPQRRSPSPGAT 2056 Query: 313 DLSCAGVGDGERRWLRRTRAPKPRPIHRGRYDSSSPGI 200 L+ G+G+GE + +R +A + R + G D G+ Sbjct: 2057 RLTRGGLGEGE--YAQRLQALRQRLLRGGPEDGKVSGL 2092
>SPEG_RAT (Q63638) Striated muscle-specific serine/threonine protein kinase (EC| 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3259 Score = 29.3 bits (64), Expect = 7.7 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 24/98 (24%) Frame = -2 Query: 421 LPSGNGTRLEAPAPSRKRPRYGSAAENAARH------------------------SPRAS 314 LPS + P+P R R GS+AE+A SP A+ Sbjct: 1997 LPSPGQESPDGPSPRRPELRRGSSAESALPRVGSREPGRSLHKAASVELPQRRSPSPGAT 2056 Query: 313 DLSCAGVGDGERRWLRRTRAPKPRPIHRGRYDSSSPGI 200 L+ G+G+GE + +R +A + R + G D G+ Sbjct: 2057 RLTRGGLGEGE--YAQRLQALRQRLLRGGPEDGKVSGL 2092
>TIPT_DROME (Q9U3V5) Protein tiptop| Length = 1024 Score = 28.9 bits (63), Expect = 10.0 Identities = 20/66 (30%), Positives = 30/66 (45%) Frame = -2 Query: 421 LPSGNGTRLEAPAPSRKRPRYGSAAENAARHSPRASDLSCAGVGDGERRWLRRTRAPKPR 242 LP+G AP P+R ++A N+A S +S S + E L + P PR Sbjct: 350 LPTGGVGTPSAPPPTR----LATSASNSACSSSSSSTSSSSNSSKSELNMLIKETMPLPR 405 Query: 241 PIHRGR 224 + RG+ Sbjct: 406 KLVRGQ 411
>TBX2_CANFA (Q863A2) T-box transcription factor TBX2 (T-box protein 2)| Length = 702 Score = 28.9 bits (63), Expect = 10.0 Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 4/94 (4%) Frame = -2 Query: 418 PSGNGTRLEA----PAPSRKRPRYGSAAENAARHSPRASDLSCAGVGDGERRWLRRTRAP 251 P +G +A PAP+R+ P +A + R +D CA D E L RA Sbjct: 303 PERDGAESDASSCDPAPAREPPASPGSAPSPLRLHRTRADEKCAADSDPEPERLSEERAG 362 Query: 250 KPRPIHRGRYDSSSPGIPRVKRRTERLTCCGGSE 149 G S P + +R ER + G E Sbjct: 363 PALGRSPGLDGGSPPRLTEPERARERRSPERGKE 396
>HXA3_HUMAN (O43365) Homeobox protein Hox-A3 (Hox-1E)| Length = 443 Score = 28.9 bits (63), Expect = 10.0 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = -3 Query: 498 AEHMSPRPYPLSAPLTDHQESQTPACSLL--ATAHGWKHQHPLGSA--RGTAAP 349 A + + +PYP SA L E PACSL ++A G H L A R +AP Sbjct: 25 AYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAP 78
>O52L2_HUMAN (Q8NGH6) Olfactory receptor 52L2| Length = 304 Score = 28.9 bits (63), Expect = 10.0 Identities = 15/27 (55%), Positives = 17/27 (62%) Frame = +3 Query: 189 FTLGIPGLDESYLPRWIGLGFGALVLL 269 F +GIPGL+ES WI L G L LL Sbjct: 16 FLVGIPGLEES--QHWIALPLGILYLL 40
>WRKY1_ARATH (Q9SI37) WRKY transcription factor 1 (WRKY DNA-binding protein 1)| (Zinc-dependent activator protein 1) (Transcription factor ZAP1) Length = 487 Score = 28.9 bits (63), Expect = 10.0 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 11/92 (11%) Frame = -2 Query: 415 SGNGTRLEAPAPSRKRPRYGSAAE--------NAAR---HSPRASDLSCAGVGDGERRWL 269 +G+ T + +P+ KR + G E N +R H+ D+ V DG R Sbjct: 259 TGDNTHKDYNSPTAKRRKKGGNIELSPVERSTNDSRIVVHTQTLFDI----VNDGYRWRK 314 Query: 268 RRTRAPKPRPIHRGRYDSSSPGIPRVKRRTER 173 ++ K P R Y SSPG P VK+ ER Sbjct: 315 YGQKSVKGSPYPRSYYRCSSPGCP-VKKHVER 345
>GRASP_RAT (Q8R4T5) General receptor for phosphoinositides 1-associated| scaffold protein (GRP1-associated scaffold protein) (Tamalin) (95 kDa postsynaptic density protein discs-large ZO-1 domain-containing protein) (PSD-95 PDZ domain-containing protein) Length = 394 Score = 28.9 bits (63), Expect = 10.0 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 7/64 (10%) Frame = -2 Query: 454 DRSSGITNTCLLPSGNGTRLEAPAPSRKRPRYGSAAENAARHSP-------RASDLSCAG 296 D + +TC L P P + P GSA A+ P R++ + CAG Sbjct: 278 DTDDAVYHTCFFGGAEPQALPPPPPPARAPGPGSAETPASVLCPAPRATLSRSASVRCAG 337 Query: 295 VGDG 284 G G Sbjct: 338 PGGG 341
>RHLB_XANAC (Q8PFZ3) ATP-dependent RNA helicase rhlB (EC 3.6.1.-)| Length = 571 Score = 28.9 bits (63), Expect = 10.0 Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 10/83 (12%) Frame = -2 Query: 415 SGNGTRLEAPAPSRKRPR-------YGSAAENAARH---SPRASDLSCAGVGDGERRWLR 266 SG G R A A + RPR AA + H + A+ AGV D ER + Sbjct: 446 SGGGRRDGAGADGKPRPRRKPRVEGQAPAAAASTEHPVVAAVAAQAPSAGVADAERAPRK 505 Query: 265 RTRAPKPRPIHRGRYDSSSPGIP 197 R R RP+ +S +P Sbjct: 506 RRRRRNGRPVEGAEPALASTPVP 528 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,083,187 Number of Sequences: 219361 Number of extensions: 1453423 Number of successful extensions: 5812 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 5462 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5807 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)