ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd23d20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22 38 0.022
2YHL1_EBV (P03181) Hypothetical protein BHLF1 37 0.037
3IF2_PSE14 (Q48E77) Translation initiation factor IF-2 33 0.69
4MKRN3_HUMAN (Q13064) Makorin-3 (Zinc finger protein 127) (RING f... 33 0.69
5ULK1_HUMAN (O75385) Serine/threonine-protein kinase ULK1 (EC 2.7... 32 1.5
6LAMC3_MOUSE (Q9R0B6) Laminin gamma-3 chain precursor (Laminin 12... 31 2.0
7TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Ta... 31 2.0
8CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22 31 2.0
9LAMC3_HUMAN (Q9Y6N6) Laminin gamma-3 chain precursor (Laminin 12... 30 3.4
10CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22 30 3.4
11SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1... 30 3.4
12PTP1_DICDI (P34137) Tyrosine-protein phosphatase 1 (EC 3.1.3.48)... 30 3.4
13SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1 30 3.4
14GTR2_HUMAN (P11168) Solute carrier family 2, facilitated glucose... 30 3.4
15SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1 30 4.5
16SYN_DROME (Q24546) Synapsin [Contains: Synapsin-1 (Syn1) (Syn1-S... 30 4.5
17CATA_RHOCA (P37743) Peroxidase/catalase (EC 1.11.1.6) (Catalase-... 30 4.5
18CSPG5_HUMAN (O95196) Chondroitin sulfate proteoglycan 5 precurso... 30 5.9
19ATL4L_ARATH (Q9ZT49) RING-H2 finger protein ATL4L (RING-H2 zinc ... 29 7.7
20SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine pr... 29 7.7
21SPEG_RAT (Q63638) Striated muscle-specific serine/threonine prot... 29 7.7
22TIPT_DROME (Q9U3V5) Protein tiptop 29 10.0
23TBX2_CANFA (Q863A2) T-box transcription factor TBX2 (T-box prote... 29 10.0
24HXA3_HUMAN (O43365) Homeobox protein Hox-A3 (Hox-1E) 29 10.0
25O52L2_HUMAN (Q8NGH6) Olfactory receptor 52L2 29 10.0
26WRKY1_ARATH (Q9SI37) WRKY transcription factor 1 (WRKY DNA-bindi... 29 10.0
27GRASP_RAT (Q8R4T5) General receptor for phosphoinositides 1-asso... 29 10.0
28RHLB_XANAC (Q8PFZ3) ATP-dependent RNA helicase rhlB (EC 3.6.1.-) 29 10.0

>CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22|
          Length = 907

 Score = 37.7 bits (86), Expect = 0.022
 Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
 Frame = -2

Query: 460  AVDRSSGITNTCLLPSGNGTRLEAPAPSRKRPRYGSAAENAARHSPRASDLSCAGVGDGE 281
            +VD  S ++ +   PSG+     +P+P R+R    S + +  R        + A  G+ E
Sbjct: 813  SVDNRSPLSRS---PSGS----RSPSPRRRRD---SPSRSPVRDRESGGRAAAAAPGNSE 862

Query: 280  RRWLR-------RTRAPKPRPIHRGRYDSSSPGIPRVKRRTE 176
             R  R       RTR+P P P  R R DSSS      KRR E
Sbjct: 863  ARRGRSYSRSPSRTRSPSPAPSRRRRRDSSSDASAPRKRRRE 904



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>YHL1_EBV (P03181) Hypothetical protein BHLF1|
          Length = 660

 Score = 37.0 bits (84), Expect = 0.037
 Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
 Frame = -2

Query: 412 GNGTRLEA-------PAPSRKRPRYGSAAENAARHS---------PRASDLSCAGVGDGE 281
           G G R+ A       PAPSR+  R G A +    HS          R+     AG   GE
Sbjct: 69  GGGNRVGAGRGRPGTPAPSRQSRRTGPAEQADHAHSNPTGGCSDPQRSPRTRQAGYALGE 128

Query: 280 RRWLRRTRAPKPRPIHRGRYDSSSPGIPRVKRR 182
                 +R P+P P  + ++ + +PG PR  RR
Sbjct: 129 GSAGLGSRGPRPHPAFQVQWSARNPGCPRTWRR 161



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>IF2_PSE14 (Q48E77) Translation initiation factor IF-2|
          Length = 843

 Score = 32.7 bits (73), Expect = 0.69
 Identities = 32/81 (39%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
 Frame = -2

Query: 394 EAPAPSRKRPRYGSAAENA-AR--------HSPRASDLSCAGVGDGERRWLRRTRAPKPR 242
           EAPAP+   P   SAA +A AR          PRA D +  G GDGER+      AP   
Sbjct: 159 EAPAPAAAAPAPASAAPSADARKRDEQRRPDKPRADDRNARG-GDGERK-----NAP--- 209

Query: 241 PIHRGRYDSSSPGIPRVKRRT 179
             HR      +P  PRV  RT
Sbjct: 210 --HRASVKEKAPA-PRVAPRT 227



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>MKRN3_HUMAN (Q13064) Makorin-3 (Zinc finger protein 127) (RING finger protein|
           63)
          Length = 507

 Score = 32.7 bits (73), Expect = 0.69
 Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
 Frame = -2

Query: 394 EAP--APSRKRPRYGSAAENAARHSPRASDLSCAGVGDGERRWLRRTRAPKPRPIHRGRY 221
           EAP  A S   P  GSAAE     + R +    A  G G   W         +P +RGR+
Sbjct: 158 EAPPAASSLSLPVIGSAAERGFFEAERDNADRGAAGGAGVESWADAIEFVPGQP-YRGRW 216

Query: 220 DSSSPGIPRVKRRTERLTCCGGSEL 146
            +S+P  P     TER     GS L
Sbjct: 217 VASAPEAPLQSSETERKQMAVGSGL 241



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>ULK1_HUMAN (O75385) Serine/threonine-protein kinase ULK1 (EC 2.7.11.1)|
           (Unc-51-like kinase 1)
          Length = 1050

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 2   RHGSPGPCTAASSPPTASPHHRASFIRP 85
           RH  PGPC+ A +P   +P H  SF  P
Sbjct: 787 RHLVPGPCSEAPAPELPAPGHGCSFADP 814



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>LAMC3_MOUSE (Q9R0B6) Laminin gamma-3 chain precursor (Laminin 12 gamma 3|
           subunit)
          Length = 1581

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
 Frame = +3

Query: 195 LGIPGLDESYLPR-WIG---LGFGALVLLNHLLSP--SPTPAQLRSEALGLCLAAFSAAL 356
           LG+ G +E   P+ ++G   L +G  V+L   + P  SP P QLR E  GL L+   ++L
Sbjct: 541 LGLRGGEELSAPKKFLGDQRLSYGQPVILTLQVPPGGSPPPIQLRLEGAGLALSLRPSSL 600

Query: 357 P 359
           P
Sbjct: 601 P 601



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>TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Tara)|
           (Trio-associated repeat on actin)
          Length = 2014

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 18/71 (25%), Positives = 27/71 (38%)
 Frame = -2

Query: 388 PAPSRKRPRYGSAAENAARHSPRASDLSCAGVGDGERRWLRRTRAPKPRPIHRGRYDSSS 209
           P   R  PR    ++N  R     +D + A     E      T+   PR   +G     +
Sbjct: 491 PCAQRDNPRTSCTSQNTPRTPSTQADKTTASCSKWEHLRSACTQRDNPRTFSQGCTQKDN 550

Query: 208 PGIPRVKRRTE 176
           PG P  +R T+
Sbjct: 551 PGPPSPRRATQ 561



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>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22|
          Length = 1010

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
 Frame = -2

Query: 418  PSGNGTRLEAPAPSRKRPRYGSAAENAARHSPRASDLSCAG-----------VGDGERRW 272
            P+G  T    PAP+R   R  S + +  R  P  +D +              VG+ +RR 
Sbjct: 921  PAGRDTGRAGPAPARGGRRNRSYSRSRTRSPPPLADAATGSRRVVSRSPSPVVGNNKRRR 980

Query: 271  LRRTRAPKPRPIHRGRYDSSSP 206
               +   + R   R RY S SP
Sbjct: 981  SYSSSRSRSRSSSRSRYRSRSP 1002



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>LAMC3_HUMAN (Q9Y6N6) Laminin gamma-3 chain precursor (Laminin 12 gamma 3|
           subunit)
          Length = 1587

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 249 FGALVLLNHLLSP--SPTPAQLRSEALGLCLAAFSAALPYLGRFLEGAGASSRVPLPEGS 422
           +G  ++L   + P  SP P QLR E  GL L+   ++L          G  ++VPL E S
Sbjct: 554 YGQPLILTFRVPPGDSPLPVQLRLEGTGLALSLRHSSLSGPQDARASQGGRAQVPLQETS 613

Query: 423 RQV 431
             V
Sbjct: 614 EDV 616



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>CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22|
          Length = 831

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -2

Query: 391 APAPSRKRPRYGSAAENAAR--HSPRASDLSCAGVGDGERRWLRRTRAPKPRPIHRGRYD 218
           +P+P  +R +Y     + +      R SD S +      RR+   +R+P P P  R   D
Sbjct: 729 SPSPPPRRRQYSDEPRSPSPPPRRRRYSDDSRSPSPPPRRRYSGDSRSPSPPPRRRYADD 788

Query: 217 SSSPGIPRVKRR 182
           S SP  P  +RR
Sbjct: 789 SRSPSPPPHRRR 800



 Score = 29.3 bits (64), Expect = 7.7
 Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
 Frame = -2

Query: 487 VAQAISSFCAVDRSSGITNTCLLPSGNGTRLEAPAPSRK--RPRYGSAAENAARHSPR-A 317
           +A A SS    D SS I+++    S + T  +A + SR+  R RY S + +      R +
Sbjct: 667 LAAAESSDSDTDSSSDISSSS--DSDSDTDSDASSYSRRSRRRRYSSDSRSPPPRRRRYS 724

Query: 316 SDLSCAGVGDGERRWLRRTRAPKPRPIHRGRY--DSSSPGIPRVKR 185
           SD          R++    R+P P P  R RY  DS SP  P  +R
Sbjct: 725 SDSRSPSPPPRRRQYSDEPRSPSPPP-RRRRYSDDSRSPSPPPRRR 769



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>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
 Frame = -2

Query: 415 SGNGTRLEAPAPSRKRPRYGSAAENAARHSPRASDLSCAGVGDGERRWL-RRTRAPKPRP 239
           SG+ +  E   P R   + G       RHSP  S          E     RR R+P P P
Sbjct: 496 SGSSSSSEDERPKRSHVKNGEVGRRR-RHSPSRSASPSPRKRQKETSPRGRRRRSPSPPP 554

Query: 238 IHRGRYDSSSPGIPRVKRRT 179
             R R  S SP  P  +RRT
Sbjct: 555 TRRRR--SPSPAPPPRRRRT 572



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>PTP1_DICDI (P34137) Tyrosine-protein phosphatase 1 (EC 3.1.3.48)|
           (Protein-tyrosine-phosphate phosphohydrolase 1)
          Length = 521

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 81  RIKLARWWGEAVGGEEAAVHGPG 13
           RIK  R+W E +GGE+ +++G G
Sbjct: 202 RIKCDRYWPEQIGGEQFSIYGNG 224



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>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 26/82 (31%), Positives = 32/82 (39%)
 Frame = -2

Query: 415 SGNGTRLEAPAPSRKRPRYGSAAENAARHSPRASDLSCAGVGDGERRWLRRTRAPKPRPI 236
           SG+ +  E   P R   + G       RHS   S          E    RR R+P P P 
Sbjct: 491 SGSSSSSEEERPKRSNVKNGEVGRRR-RHSHSRSPSPSPRKRQKEPSPRRRRRSPSPPPA 549

Query: 235 HRGRYDSSSPGIPRVKRRTERL 170
            R R  S SP  P  +RR+  L
Sbjct: 550 RRRR--SPSPPPPPRRRRSPSL 569



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>GTR2_HUMAN (P11168) Solute carrier family 2, facilitated glucose transporter|
           member 2 (Glucose transporter type 2, liver)
          Length = 524

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 159 PQQVNLSVLRFTLGIPGLDESYLPRWIGLGFGALVLLNHLLSPSPTP 299
           PQQV +S  R  LG+P  D   +  ++      L  +++ ++P PTP
Sbjct: 34  PQQVIISHYRHVLGVPLDDRKAINNYVINSTDELPTISYSMNPKPTP 80



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>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 15/94 (15%)
 Frame = -2

Query: 415 SGNGTRLEAPAPSRKRPRYGSAAENAARHSPRASDLSCAGVGDGE--------RRWL--- 269
           SG+ +  E   P R   + G       RHSP  S          E        +RW    
Sbjct: 496 SGSSSSSEDERPKRSHVKNGEVGRRR-RHSPSRSASPSPRKRQKETSPRMQMGKRWQSPV 554

Query: 268 ----RRTRAPKPRPIHRGRYDSSSPGIPRVKRRT 179
               RR R+P P P  R R  S SP  P  +RRT
Sbjct: 555 TKSGRRRRSPSPPPTRRRR--SPSPAPPPRRRRT 586



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>SYN_DROME (Q24546) Synapsin [Contains: Synapsin-1 (Syn1) (Syn1-S); Synapsin-2|
            (Syn2)]
          Length = 1025

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -2

Query: 490  YVAQAISSFCAVDRSSGITNTCLLPSGNGTRLEAPAPSRKRPRYGSAAENAARHS 326
            Y A A  +      +SG  +  +   G G    +  PS  RP Y  +  NA++HS
Sbjct: 855  YSAPAAVTTVLPGDTSGYDSNSIASQGEGLNNPSDLPSYTRPSYSRSESNASKHS 909



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>CATA_RHOCA (P37743) Peroxidase/catalase (EC 1.11.1.6) (Catalase-peroxidase)|
          Length = 576

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -2

Query: 361 YGSAAENAARHSPRASDLSCAGVGDGERRWLRRTRAPKPRPIHRGRYDSSSPGIPRVKR 185
           +G+    A    P A+D++   +    R W  R R P PR        S +PG PR++R
Sbjct: 271 HGNGDAKALGPDPEAADVTVRALAGRTRIWAARRRRPSPR-------GSRAPG-PRIRR 321



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>CSPG5_HUMAN (O95196) Chondroitin sulfate proteoglycan 5 precursor (Neuroglycan|
           C) (Acidic leucine-rich EGF-like domain-containing brain
           protein)
          Length = 566

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +2

Query: 302 AAQVGGSGAVPGRVLSGAAVPRALPRGCWCFQPCAVARREQAG 430
           AA V  SGAVP R    A     L +G   ++P A   RE+AG
Sbjct: 22  AALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTREEAG 64



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>ATL4L_ARATH (Q9ZT49) RING-H2 finger protein ATL4L (RING-H2 zinc finger protein|
           RHA3b)
          Length = 200

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
 Frame = -2

Query: 535 IAMSTDVVFVF*SRTYVAQAISSFCAVDRSSGITN-TCLLPSGNGTRLEAPAPSR----- 374
           +A  TD+V +  +       ++   AV R + +   T + P+  G   EAP P++     
Sbjct: 20  LAAETDMVVILSALLCALVCVAGLAAVARCAWLRRLTGVNPAAVG---EAPPPNKGLKKK 76

Query: 373 -----KRPRYGSAAENAARHSPRASDLSCAGVGDGE 281
                 +  Y ++A  AA     A DL C+ VGDG+
Sbjct: 77  ALQALPKSTYTASASTAAA----ADDLPCSSVGDGD 108



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>SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine protein kinase (EC|
            2.7.11.1) (Aortic preferentially expressed protein 1)
            (APEG-1)
          Length = 3262

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 24/98 (24%)
 Frame = -2

Query: 421  LPSGNGTRLEAPAPSRKRPRYGSAAENAARH------------------------SPRAS 314
            LPS      + P+P R   R GS+AE+A                           SP A+
Sbjct: 1997 LPSPGQESPDGPSPRRPELRRGSSAESALPRVGSREPGRSLHKAASVELPQRRSPSPGAT 2056

Query: 313  DLSCAGVGDGERRWLRRTRAPKPRPIHRGRYDSSSPGI 200
             L+  G+G+GE  + +R +A + R +  G  D    G+
Sbjct: 2057 RLTRGGLGEGE--YAQRLQALRQRLLRGGPEDGKVSGL 2092



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>SPEG_RAT (Q63638) Striated muscle-specific serine/threonine protein kinase (EC|
            2.7.11.1) (Aortic preferentially expressed protein 1)
            (APEG-1)
          Length = 3259

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 24/98 (24%)
 Frame = -2

Query: 421  LPSGNGTRLEAPAPSRKRPRYGSAAENAARH------------------------SPRAS 314
            LPS      + P+P R   R GS+AE+A                           SP A+
Sbjct: 1997 LPSPGQESPDGPSPRRPELRRGSSAESALPRVGSREPGRSLHKAASVELPQRRSPSPGAT 2056

Query: 313  DLSCAGVGDGERRWLRRTRAPKPRPIHRGRYDSSSPGI 200
             L+  G+G+GE  + +R +A + R +  G  D    G+
Sbjct: 2057 RLTRGGLGEGE--YAQRLQALRQRLLRGGPEDGKVSGL 2092



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>TIPT_DROME (Q9U3V5) Protein tiptop|
          Length = 1024

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = -2

Query: 421 LPSGNGTRLEAPAPSRKRPRYGSAAENAARHSPRASDLSCAGVGDGERRWLRRTRAPKPR 242
           LP+G      AP P+R      ++A N+A  S  +S  S +     E   L +   P PR
Sbjct: 350 LPTGGVGTPSAPPPTR----LATSASNSACSSSSSSTSSSSNSSKSELNMLIKETMPLPR 405

Query: 241 PIHRGR 224
            + RG+
Sbjct: 406 KLVRGQ 411



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>TBX2_CANFA (Q863A2) T-box transcription factor TBX2 (T-box protein 2)|
          Length = 702

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
 Frame = -2

Query: 418 PSGNGTRLEA----PAPSRKRPRYGSAAENAARHSPRASDLSCAGVGDGERRWLRRTRAP 251
           P  +G   +A    PAP+R+ P    +A +  R     +D  CA   D E   L   RA 
Sbjct: 303 PERDGAESDASSCDPAPAREPPASPGSAPSPLRLHRTRADEKCAADSDPEPERLSEERAG 362

Query: 250 KPRPIHRGRYDSSSPGIPRVKRRTERLTCCGGSE 149
                  G    S P +   +R  ER +   G E
Sbjct: 363 PALGRSPGLDGGSPPRLTEPERARERRSPERGKE 396



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>HXA3_HUMAN (O43365) Homeobox protein Hox-A3 (Hox-1E)|
          Length = 443

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -3

Query: 498 AEHMSPRPYPLSAPLTDHQESQTPACSLL--ATAHGWKHQHPLGSA--RGTAAP 349
           A + + +PYP SA L    E   PACSL   ++A G    H L  A  R  +AP
Sbjct: 25  AYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAP 78



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>O52L2_HUMAN (Q8NGH6) Olfactory receptor 52L2|
          Length = 304

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +3

Query: 189 FTLGIPGLDESYLPRWIGLGFGALVLL 269
           F +GIPGL+ES    WI L  G L LL
Sbjct: 16  FLVGIPGLEES--QHWIALPLGILYLL 40



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>WRKY1_ARATH (Q9SI37) WRKY transcription factor 1 (WRKY DNA-binding protein 1)|
           (Zinc-dependent activator protein 1) (Transcription
           factor ZAP1)
          Length = 487

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
 Frame = -2

Query: 415 SGNGTRLEAPAPSRKRPRYGSAAE--------NAAR---HSPRASDLSCAGVGDGERRWL 269
           +G+ T  +  +P+ KR + G   E        N +R   H+    D+    V DG R   
Sbjct: 259 TGDNTHKDYNSPTAKRRKKGGNIELSPVERSTNDSRIVVHTQTLFDI----VNDGYRWRK 314

Query: 268 RRTRAPKPRPIHRGRYDSSSPGIPRVKRRTER 173
              ++ K  P  R  Y  SSPG P VK+  ER
Sbjct: 315 YGQKSVKGSPYPRSYYRCSSPGCP-VKKHVER 345



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>GRASP_RAT (Q8R4T5) General receptor for phosphoinositides 1-associated|
           scaffold protein (GRP1-associated scaffold protein)
           (Tamalin) (95 kDa postsynaptic density protein
           discs-large ZO-1 domain-containing protein) (PSD-95 PDZ
           domain-containing protein)
          Length = 394

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
 Frame = -2

Query: 454 DRSSGITNTCLLPSGNGTRLEAPAPSRKRPRYGSAAENAARHSP-------RASDLSCAG 296
           D    + +TC         L  P P  + P  GSA   A+   P       R++ + CAG
Sbjct: 278 DTDDAVYHTCFFGGAEPQALPPPPPPARAPGPGSAETPASVLCPAPRATLSRSASVRCAG 337

Query: 295 VGDG 284
            G G
Sbjct: 338 PGGG 341



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>RHLB_XANAC (Q8PFZ3) ATP-dependent RNA helicase rhlB (EC 3.6.1.-)|
          Length = 571

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
 Frame = -2

Query: 415 SGNGTRLEAPAPSRKRPR-------YGSAAENAARH---SPRASDLSCAGVGDGERRWLR 266
           SG G R  A A  + RPR          AA  +  H   +  A+    AGV D ER   +
Sbjct: 446 SGGGRRDGAGADGKPRPRRKPRVEGQAPAAAASTEHPVVAAVAAQAPSAGVADAERAPRK 505

Query: 265 RTRAPKPRPIHRGRYDSSSPGIP 197
           R R    RP+       +S  +P
Sbjct: 506 RRRRRNGRPVEGAEPALASTPVP 528


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,083,187
Number of Sequences: 219361
Number of extensions: 1453423
Number of successful extensions: 5812
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 5462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5807
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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