>ABF1_STRCX (P82593) Alpha-N-arabinofuranosidase 1 precursor (EC 3.2.1.55)|
           (Alpha-N-arabinofuranosidase I) (Arabinosidase I)
           (Alpha-N-AFase I)
          Length = 825

 Score =  117 bits (294), Expect = 2e-26
 Identities = 68/196 (34%), Positives = 104/196 (53%), Gaps = 14/196 (7%)
 Frame = +2

Query: 32  WGYWTDDGLGFFEFLQLAEDLGASPVWVVN---DGASINEEVPT-AIIASLVKDVVDGIE 199
           WGY    GLG++E+ + +ED+GA P+ VV     G   N+ V   A++   ++D +D IE
Sbjct: 288 WGYNQSYGLGYYEYFRFSEDIGAMPLPVVPALVTGCGQNKAVDDEALLKRHIQDTLDLIE 347

Query: 200 FARGGVNTTWGSVRAAMGHPQPFKLDYVSIGNQECWMLYYRGNYRKFYSAIKAAYPDINI 379
           FA G   + WG VRA MGHP+PF+L ++ +GN+E     +   +++F +AI+A YPDI +
Sbjct: 348 FANGPATSKWGKVRAEMGHPRPFRLTHLEVGNEENLPDEFFDRFKQFRAAIEAEYPDITV 407

Query: 380 ISSC---DKST-------ISASNPADLYDVHVYASSANMFSRTSMFDNTPRSGPKAIVSE 529
           +S+    D  T       ++     ++ D H Y S          +D+  R GPK  + E
Sbjct: 408 VSNSGPDDAGTTFDTAWKLNREANVEMVDEHYYNSPNWFLQNNDRYDSYDRGGPKVFLGE 467

Query: 530 YAVTGNDAGKGTLVAA 577
           YA  GN    G   AA
Sbjct: 468 YASQGNAWKNGLSEAA 483

>ABFA_ASPNG (P42254) Alpha-N-arabinofuranosidase A precursor (EC 3.2.1.55)|
           (Arabinosidase A) (ABF A)
          Length = 628

 Score = 92.0 bits (227), Expect = 1e-18
 Identities = 61/179 (34%), Positives = 94/179 (52%), Gaps = 11/179 (6%)
 Frame = +2

Query: 32  WGYWTDDGLGFFEFLQLAEDLGASPVWVVNDGASINEEVPTAI----IASLVKDVVDGIE 199
           W Y+  DGLG  E+    EDLG  PV  V DG ++     T +    +   + DV++ +E
Sbjct: 276 WTYYNTDGLGLHEYFYWCEDLGLVPVLGVWDGFALESGGNTPLTGDALTPYIDDVLNELE 335

Query: 200 FARGGVNTTWGSVRAAMGHPQPFKLDYVSIGNQECWML-----YYRGNYRKFYSAIKAAY 364
           +  G  +TT+G+ RAA G  +P+ L  V IGN++  ML      Y   +  FY AI AAY
Sbjct: 336 YILGDTSTTYGAWRAANGQEEPWNLTMVEIGNED--MLGGGCESYAERFTAFYDAIHAAY 393

Query: 365 PDINIISSCDKS-TISASNPADLY-DVHVYASSANMFSRTSMFDNTPRSGPKAIVSEYA 535
           PD+ +I+S  ++  +  S P   + D H Y++   +  + + FDN  RS P   + EY+
Sbjct: 394 PDLILIASTSEADCLPESMPEGSWVDYHDYSTPDGLVGQFNYFDNLNRSVP-YFIGEYS 451

>ABF2_BACSU (P94552) Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55) (Arabinosidase|
           2)
          Length = 495

 Score = 36.2 bits (82), Expect = 0.071
 Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
 Frame = +2

Query: 2   GGKTWPVNDAWGYWTDDG-LGFFEFLQLAEDLGASPVWVVNDGASINEEVPTAIIASLVK 178
           G +   +N  WG   +    G  EF+ L E L   P    N G+   +E+          
Sbjct: 85  GDRKTMLNTHWGGTIESNEFGTHEFMMLCELLECEPYICGNVGSGTVQEM---------S 135

Query: 179 DVVDGIEFARGGVNTTWGSVRAAMGHPQPFKLDYVSIGNQECWML-------YYRGNYRK 337
           + ++ + F  G   + W   R   G  +P+KL Y  +GN E W         YY   YR+
Sbjct: 136 EWIEYMTFEEGTPMSDW---RKQNGREEPWKLKYFGVGN-ENWGCGGNMHPEYYADLYRR 191

Query: 338 FYSAIK 355
           F + ++
Sbjct: 192 FQTYVR 197

>IDI2_METKA (Q8TX99) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP|
           isomerase) (Isopentenyl pyrophosphate isomerase)
          Length = 365

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = +2

Query: 50  DGLGFFEFLQLAEDLGASPVWVVNDGASINEEVPTAIIASLVKDVVDGIEFARGGVNTTW 229
           D  GF + L    +    PV +   GA ++ E      A LV+D+VDGI+    G  T W
Sbjct: 165 DAAGFVDVLAEVCETVDVPVVLKETGAGVSAED-----AKLVRDIVDGIDVGGAG-GTNW 218

Query: 230 GSVRA 244
             V A
Sbjct: 219 AVVEA 223

>CRGA_RAT (P10065) Gamma crystallin A (Gamma crystallin 1-1)|
          Length = 173

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
 Frame = +2

Query: 302 CWMLYYRGNYRKF-YSAIKAAYPDI-------NIISSCDKSTISASNPADLYD 436
           CWMLY R NY+ + Y   +  YPD        + I SC     ++S+   LY+
Sbjct: 41  CWMLYERPNYQGYQYFLRRGDYPDYQQWMGFSDSIRSCRSIPYTSSHRIRLYE 93

>CRGA_MOUSE (P04345) Gamma crystallin A (Gamma crystallin 4)|
          Length = 173

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
 Frame = +2

Query: 302 CWMLYYRGNYRKF-YSAIKAAYPDI-------NIISSCDKSTISASNPADLYD 436
           CWMLY R NY+ + Y   +  YPD        + I SC     ++S+   LY+
Sbjct: 41  CWMLYERPNYQGYQYFLRRGDYPDYQQWMGFSDSIRSCRSIPYTSSHRIRLYE 93

>PUMA_PARUN (O61308) 227 kDa spindle- and centromere-associated protein (PUMA1)|
          Length = 1955

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 28/112 (25%), Positives = 44/112 (39%)
 Frame = +2

Query: 230  GSVRAAMGHPQPFKLDYVSIGNQECWMLYYRGNYRKFYSAIKAAYPDINIISSCDKSTIS 409
            G   A + HPQ  +LDYV   N+     YY     +  S  K AY   + I S + +T  
Sbjct: 1834 GVAAATILHPQTDRLDYV-FANRSALSSYYTVPTEQHASRGKEAYRTSSTIKSSEGTTRE 1892

Query: 410  ASNPADLYDVHVYASSANMFSRTSMFDNTPRSGPKAIVSEYAVTGNDAGKGT 565
            +               AN  + ++  +   R+ P   V++  VTG  +   T
Sbjct: 1893 SYTYQSRTVSSNIIEQANGMTSSASGEGMSRAYPPTEVNQGDVTGRKSRPAT 1944

>HXDBA_BRARE (Q90470) Homeobox protein Hox-D11a (Hox-D11) (Hox-C11)|
          Length = 263

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = +2

Query: 314 YYRGNYRKFYSAIKAAYPDINIISSCDKSTISASNPADLYDVHVYASSANMFSRTSMFDN 493
           +YRGNY  +YS  +  + D  ++ S +++ +   N +      +Y+  A   S  S F N
Sbjct: 58  HYRGNYASYYSTEEIMHRD--LLQSTNRAEMIFKNDS------MYSHHAGTNSSCSFFTN 109

Query: 494 TPRSG 508
             R+G
Sbjct: 110 VGRNG 114

>IDH_RICPR (Q9ZDR0) Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)|
           (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific
           ICDH) (IDP)
          Length = 483

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +2

Query: 338 FYSAIKAAYPDINIISSCDKSTISASNPADLYDVHVYASSANMFSRTSMFDNTPRSGPKA 517
           FY   +  +P++N+       TI   N  DLY    Y  + NM+    +  +T   G K 
Sbjct: 104 FYPFTRTLHPNLNL-------TIIRENEEDLYSGVEYRQTHNMYESMKLISHT---GCKK 153

Query: 518 IVS---EYAVTGN 547
           I+    EYA+  N
Sbjct: 154 IIRYAFEYAIKNN 166


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,636,733
Number of Sequences: 219361
Number of extensions: 1673653
Number of successful extensions: 5031
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5022
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)