No.
Definition
Score (bits)
E Value
1 ref|XM_479599.1| Oryza sativa (japonica cultivar-group), mRNA
571
e-160
2 dbj|AK064838.1| Oryza sativa (japonica cultivar-group) cDNA clon...
555
e-155
3 dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D...
174
2e-40
4 dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic D...
174
2e-40
5 dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic D...
174
2e-40
6 dbj|AK062471.1| Oryza sativa (japonica cultivar-group) cDNA clon...
127
4e-26
7 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
105
2e-19
8 gb|AC119748.1| Genomic sequence for Oryza sativa, Nipponbare str...
105
2e-19
9 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
105
2e-19
10 gb|AF320324.1|AF320324 Hordeum vulgare arabinoxylan arabinofuran...
58
3e-05
11 gb|AF429985.1|AF429985 Lycopersicon esculentum arabinosidase ARA...
54
5e-04
12 dbj|AB073310.1| Lycopersicon esculentum LeARF1 mRNA for alpha-L-...
54
5e-04
13 gb|AC137839.19| Medicago truncatula clone mth2-34j11, complete s...
42
2.0
14 gb|AC147483.13| Medicago truncatula clone mth2-22o7, complete se...
42
2.0
15 gb|AY309436.1| Malus x domestica alpha-L-arabinofuranosidase (AF...
42
2.0
16 gb|AC148241.21| Medicago truncatula clone mth2-14m21, complete s...
42
2.0
17 dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...
42
2.0
18 dbj|AB073311.1| Pyrus pyrifolia PPARF1 mRNA for alpha-L-arabinof...
42
2.0
19 gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...
42
2.0
20 emb|BX000507.2|CNS08CDX Oryza sativa chromosome 12, . BAC OJ1003...
42
2.0
21 gb|AC119671.4| Oryza sativa (japonica cultivar-group) chromosome...
40
7.9
22 ref|XM_362783.1| Magnaporthe grisea 70-15 hypothetical protein (...
40
7.9
23 gb|AY294068.1| Pinus monticola putative NBS-LRR protein G8506 (R...
40
7.9
24 gb|AY294065.1| Pinus monticola putative NBS-LRR protein G8502 (R...
40
7.9
25 gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome
40
7.9
26 gb|AF320325.1|AF320325 Hordeum vulgare arabinoxylan arabinofuran...
40
7.9
27 dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...
40
7.9
28 dbj|AB193032.1| Corynebacterium glutamicum DNA, strain specific ...
40
7.9
29 gb|AC005035.2| Homo sapiens BAC clone RP11-353P23 from 2, comple...
40
7.9
30 gb|AC010873.12| Homo sapiens BAC clone RP11-112N16 from 2, compl...
40
7.9
31 dbj|AK098954.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
7.9
32 gb|AY106254.1| Zea mays PCO073074 mRNA sequence
40
7.9
33 gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...
40
7.9
34 emb|AL845320.10| Zebrafish DNA sequence from clone DKEY-30J19, c...
40
7.9
>dbj|AP008213.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 174 bits (88), Expect = 2e-40
Identities = 127/140 (90%)
Strand = Plus / Plus
Query: 185 gttgatggtatcgagtttgcaaggggaggggtcaacactacatggggttcagttcgtgcg 244
|||||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||||
Sbjct: 29132520 gttgatggcatcgagtttgccaggggagggcccaagactacatggggttcagttcgtgca 29132579
Query: 245 gcaatggggcatcctcagccctttaagcttgattatgtttcaatagggaatcaagaatgc 304
|| ||||| ||||| || |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 29132580 gcgatgggtcatccacaaccctttaaccttgactatgtttcaatagggaatcaagaatgc 29132639
Query: 305 tggatgctctactacagagg 324
||||||||||| ||||||||
Sbjct: 29132640 tggatgctctattacagagg 29132659
Score = 125 bits (63), Expect = 2e-25
Identities = 108/123 (87%)
Strand = Plus / Plus
Query: 322 aggcaattaccgaaagttctattctgcgattaaagctgcctacccagacatcaatattat 381
||||||||||| ||| |||||||| ||||||||||||||||| ||||||||||| | |
Sbjct: 29132943 aggcaattaccaaaaattctattccgcgattaaagctgcctatccagacatcaacgtcgt 29133002
Query: 382 atcaagctgtgataagtcaactatttcggcatccaaccctgccgatctatatgatgttca 441
||||| |||||||| || |||||||| | |||||||||||||||||||||||||||||
Sbjct: 29133003 gtcaagttgtgataaatccactatttctccgtccaaccctgccgatctatatgatgttca 29133062
Query: 442 tgt 444
|||
Sbjct: 29133063 tgt 29133065
Score = 101 bits (51), Expect = 3e-18
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 21 tcaatgatgcctggggatactggactgacgatggactcggattctttgagttccttcag 79
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 29132094 tcaatgatgcctggggatactggactgatgatggacttggattctttgagttccttcag 29132152
Score = 87.7 bits (44), Expect = 4e-14
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 513 aggcaattgttagcgagtacgccgtgactggaaacgacgctggcaaaggaacactggtag 572
|||||||||| || |||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct: 29133334 aggcaattgtaagtgagtacgctgtgactggaaaggatgctggcaaaggaacactggtag 29133393
Query: 573 cagcactcgcag 584
|||||| ||||
Sbjct: 29133394 aagcactagcag 29133405
Score = 61.9 bits (31), Expect = 2e-06
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 462 atatgttttccagaactagtatgtttgacaa 492
|||||||||||||||||||||||||||||||
Sbjct: 29133190 atatgttttccagaactagtatgtttgacaa 29133220
Score = 52.0 bits (26), Expect = 0.002
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 81 tagctgaagaccttggtgcttcccctgtttgggtggtgaatgatgg 126
||||||||||||| |||||||| || || |||||||| ||||||||
Sbjct: 29132239 tagctgaagacctcggtgcttcgccagtatgggtggtcaatgatgg 29132284
>dbj|AP003813.4 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1150_E04
Length = 130973
Score = 174 bits (88), Expect = 2e-40
Identities = 127/140 (90%)
Strand = Plus / Plus
Query: 185 gttgatggtatcgagtttgcaaggggaggggtcaacactacatggggttcagttcgtgcg 244
|||||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||||
Sbjct: 67638 gttgatggcatcgagtttgccaggggagggcccaagactacatggggttcagttcgtgca 67697
Query: 245 gcaatggggcatcctcagccctttaagcttgattatgtttcaatagggaatcaagaatgc 304
|| ||||| ||||| || |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 67698 gcgatgggtcatccacaaccctttaaccttgactatgtttcaatagggaatcaagaatgc 67757
Query: 305 tggatgctctactacagagg 324
||||||||||| ||||||||
Sbjct: 67758 tggatgctctattacagagg 67777
Score = 125 bits (63), Expect = 2e-25
Identities = 108/123 (87%)
Strand = Plus / Plus
Query: 322 aggcaattaccgaaagttctattctgcgattaaagctgcctacccagacatcaatattat 381
||||||||||| ||| |||||||| ||||||||||||||||| ||||||||||| | |
Sbjct: 68061 aggcaattaccaaaaattctattccgcgattaaagctgcctatccagacatcaacgtcgt 68120
Query: 382 atcaagctgtgataagtcaactatttcggcatccaaccctgccgatctatatgatgttca 441
||||| |||||||| || |||||||| | |||||||||||||||||||||||||||||
Sbjct: 68121 gtcaagttgtgataaatccactatttctccgtccaaccctgccgatctatatgatgttca 68180
Query: 442 tgt 444
|||
Sbjct: 68181 tgt 68183
Score = 101 bits (51), Expect = 3e-18
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 21 tcaatgatgcctggggatactggactgacgatggactcggattctttgagttccttcag 79
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 67212 tcaatgatgcctggggatactggactgatgatggacttggattctttgagttccttcag 67270
Score = 87.7 bits (44), Expect = 4e-14
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 513 aggcaattgttagcgagtacgccgtgactggaaacgacgctggcaaaggaacactggtag 572
|||||||||| || |||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct: 68452 aggcaattgtaagtgagtacgctgtgactggaaaggatgctggcaaaggaacactggtag 68511
Query: 573 cagcactcgcag 584
|||||| ||||
Sbjct: 68512 aagcactagcag 68523
Score = 61.9 bits (31), Expect = 2e-06
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 462 atatgttttccagaactagtatgtttgacaa 492
|||||||||||||||||||||||||||||||
Sbjct: 68308 atatgttttccagaactagtatgtttgacaa 68338
Score = 52.0 bits (26), Expect = 0.002
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 81 tagctgaagaccttggtgcttcccctgtttgggtggtgaatgatgg 126
||||||||||||| |||||||| || || |||||||| ||||||||
Sbjct: 67357 tagctgaagacctcggtgcttcgccagtatgggtggtcaatgatgg 67402
>dbj|AP003818.2 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1200_C08
Length = 106214
Score = 174 bits (88), Expect = 2e-40
Identities = 127/140 (90%)
Strand = Plus / Plus
Query: 185 gttgatggtatcgagtttgcaaggggaggggtcaacactacatggggttcagttcgtgcg 244
|||||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||||
Sbjct: 80477 gttgatggcatcgagtttgccaggggagggcccaagactacatggggttcagttcgtgca 80536
Query: 245 gcaatggggcatcctcagccctttaagcttgattatgtttcaatagggaatcaagaatgc 304
|| ||||| ||||| || |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 80537 gcgatgggtcatccacaaccctttaaccttgactatgtttcaatagggaatcaagaatgc 80596
Query: 305 tggatgctctactacagagg 324
||||||||||| ||||||||
Sbjct: 80597 tggatgctctattacagagg 80616
Score = 125 bits (63), Expect = 2e-25
Identities = 108/123 (87%)
Strand = Plus / Plus
Query: 322 aggcaattaccgaaagttctattctgcgattaaagctgcctacccagacatcaatattat 381
||||||||||| ||| |||||||| ||||||||||||||||| ||||||||||| | |
Sbjct: 80900 aggcaattaccaaaaattctattccgcgattaaagctgcctatccagacatcaacgtcgt 80959
Query: 382 atcaagctgtgataagtcaactatttcggcatccaaccctgccgatctatatgatgttca 441
||||| |||||||| || |||||||| | |||||||||||||||||||||||||||||
Sbjct: 80960 gtcaagttgtgataaatccactatttctccgtccaaccctgccgatctatatgatgttca 81019
Query: 442 tgt 444
|||
Sbjct: 81020 tgt 81022
Score = 101 bits (51), Expect = 3e-18
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 21 tcaatgatgcctggggatactggactgacgatggactcggattctttgagttccttcag 79
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 80051 tcaatgatgcctggggatactggactgatgatggacttggattctttgagttccttcag 80109
Score = 87.7 bits (44), Expect = 4e-14
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 513 aggcaattgttagcgagtacgccgtgactggaaacgacgctggcaaaggaacactggtag 572
|||||||||| || |||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct: 81291 aggcaattgtaagtgagtacgctgtgactggaaaggatgctggcaaaggaacactggtag 81350
Query: 573 cagcactcgcag 584
|||||| ||||
Sbjct: 81351 aagcactagcag 81362
Score = 61.9 bits (31), Expect = 2e-06
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 462 atatgttttccagaactagtatgtttgacaa 492
|||||||||||||||||||||||||||||||
Sbjct: 81147 atatgttttccagaactagtatgtttgacaa 81177
Score = 52.0 bits (26), Expect = 0.002
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 81 tagctgaagaccttggtgcttcccctgtttgggtggtgaatgatgg 126
||||||||||||| |||||||| || || |||||||| ||||||||
Sbjct: 80196 tagctgaagacctcggtgcttcgccagtatgggtggtcaatgatgg 80241
>gb|AC119748.1 | Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0042L15, from chromosome 3, complete sequence
Length = 172475
Score = 105 bits (53), Expect = 2e-19
Identities = 110/129 (85%)
Strand = Plus / Minus
Query: 177 aggatgttgttgatggtatcgagtttgcaaggggaggggtcaacactacatggggttcag 236
|||| ||||||||||| || |||||||| ||||||| || ||||||||||||||||
Sbjct: 75813 aggacgttgttgatggcattgagtttgctaggggagaccctaagactacatggggttcag 75754
Query: 237 ttcgtgcggcaatggggcatcctcagccctttaagcttgattatgtttcaatagggaatc 296
||||||| |||||||| ||||| |||||||| |||| ||||| ||||| |||||||||
Sbjct: 75753 ttcgtgcagcaatgggacatccagagccctttccgctttattatatttcagtagggaatc 75694
Query: 297 aagaatgct 305
|||||||||
Sbjct: 75693 aagaatgct 75685
Score = 75.8 bits (38), Expect = 1e-10
Identities = 92/110 (83%)
Strand = Plus / Minus
Query: 335 aagttctattctgcgattaaagctgcctacccagacatcaatattatatcaagctgtgat 394
|||||||||||||| || ||||| | ||||| |||||||| |||||||||||||||||
Sbjct: 75569 aagttctattctgcaataaaagcgtcttacccggacatcaaaattatatcaagctgtgac 75510
Query: 395 aagtcaactatttcggcatccaaccctgccgatctatatgatgttcatgt 444
| || | ||||| ||| ||||||||| |||||||||||||| |||||
Sbjct: 75509 atatcttccatttcagcagtcaaccctgctgatctatatgatgtccatgt 75460
Score = 44.1 bits (22), Expect = 0.51
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 41 tggactgacgatggactcggattctttgagttccttca 78
|||||||| |||||||| || || ||||||||||||||
Sbjct: 76665 tggactgatgatggactaggcttttttgagttccttca 76628
Score = 44.1 bits (22), Expect = 0.51
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 462 atatgttttccagaactagtatgtttgacaacacaccacgcagcggacctaagg 515
|||||||||||| ||| || |||||||| | |||||| ||||| ||||| ||||
Sbjct: 75349 atatgttttccaaaacaagaatgtttgatagcacaccccgcagtggacccaagg 75296
>dbj|AP008209.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 105 bits (53), Expect = 2e-19
Identities = 110/129 (85%)
Strand = Plus / Minus
Query: 177 aggatgttgttgatggtatcgagtttgcaaggggaggggtcaacactacatggggttcag 236
|||| ||||||||||| || |||||||| ||||||| || ||||||||||||||||
Sbjct: 11522004 aggacgttgttgatggcattgagtttgctaggggagaccctaagactacatggggttcag 11521945
Query: 237 ttcgtgcggcaatggggcatcctcagccctttaagcttgattatgtttcaatagggaatc 296
||||||| |||||||| ||||| |||||||| |||| ||||| ||||| |||||||||
Sbjct: 11521944 ttcgtgcagcaatgggacatccagagccctttccgctttattatatttcagtagggaatc 11521885
Query: 297 aagaatgct 305
|||||||||
Sbjct: 11521884 aagaatgct 11521876
Score = 75.8 bits (38), Expect = 1e-10
Identities = 92/110 (83%)
Strand = Plus / Minus
Query: 335 aagttctattctgcgattaaagctgcctacccagacatcaatattatatcaagctgtgat 394
|||||||||||||| || ||||| | ||||| |||||||| |||||||||||||||||
Sbjct: 11521760 aagttctattctgcaataaaagcgtcttacccggacatcaaaattatatcaagctgtgac 11521701
Query: 395 aagtcaactatttcggcatccaaccctgccgatctatatgatgttcatgt 444
| || | ||||| ||| ||||||||| |||||||||||||| |||||
Sbjct: 11521700 atatcttccatttcagcagtcaaccctgctgatctatatgatgtccatgt 11521651
Score = 44.1 bits (22), Expect = 0.51
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 41 tggactgacgatggactcggattctttgagttccttca 78
|||||||| |||||||| || || ||||||||||||||
Sbjct: 11522856 tggactgatgatggactaggcttttttgagttccttca 11522819
Score = 44.1 bits (22), Expect = 0.51
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 462 atatgttttccagaactagtatgtttgacaacacaccacgcagcggacctaagg 515
|||||||||||| ||| || |||||||| | |||||| ||||| ||||| ||||
Sbjct: 11521540 atatgttttccaaaacaagaatgtttgatagcacaccccgcagtggacccaagg 11521487
>emb|AL845320.10 | Zebrafish DNA sequence from clone DKEY-30J19, complete sequence
Length = 183417
Score = 40.1 bits (20), Expect = 7.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 271 gcttgattatgtttcaatag 290
||||||||||||||||||||
Sbjct: 124466 gcttgattatgtttcaatag 124485
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,521,568
Number of Sequences: 3902068
Number of extensions: 4521568
Number of successful extensions: 76217
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75926
Number of HSP's gapped (non-prelim): 280
length of query: 584
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 561
effective length of database: 17,143,297,704
effective search space: 9617390011944
effective search space used: 9617390011944
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)