ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd23d10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY722764.1| Galaxea fascularis clone PEN406.1 18S ribosomal R... 44 0.45
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.45
3gb|AC123935.4| Mus musculus BAC clone RP23-354J3 from chromosome... 44 0.45
4emb|AL024495.1|HS404L14 Human DNA sequence from clone RP3-404L14... 44 0.45
5gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbare str... 44 0.45
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.45
7gb|AC121491.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.45
8gb|AC021016.5| Homo sapiens BAC clone RP11-378A13 from 2, comple... 42 1.8
9emb|BX000531.11| Human DNA sequence from clone DAQB-12N14 on chr... 42 1.8
10emb|BX247947.4| Human DNA sequence from clone DASS-372E1 on chro... 42 1.8
11emb|AL662860.3| Human DNA sequence from clone XXbac-158F21 on ch... 42 1.8
12emb|AL662869.2| Human DNA sequence from clone XXbac-128A13 on ch... 42 1.8
13gb|AY324608.1| Homo sapiens apolipoprotein B (including Ag(x) an... 42 1.8
14emb|CR388393.8| Human DNA sequence from clone DADB-136A24 on chr... 42 1.8
15emb|CR759768.2| Human DNA sequence from clone DAMC-143I21 on chr... 42 1.8
16emb|CR759956.2| Human DNA sequence from clone DAAP-341G9 on chro... 42 1.8
17emb|BX247906.8| Zebrafish DNA sequence from clone DKEY-9O22 in l... 42 1.8
18emb|BX927223.9| Human DNA sequence from clone DAMA-380P17 on chr... 42 1.8
19gb|AC115619.3| Homo sapiens BAC clone RP11-116D2 from 2, complet... 42 1.8
20gb|AF245203.1|AF245203 Pan troglodytes schweinfurthii isolate 17... 42 1.8
21gb|AF245202.1|AF245202 Pan troglodytes troglodytes isolate 16 ap... 42 1.8
22gb|AF245201.1|AF245201 Pan troglodytes troglodytes isolate 15 ap... 42 1.8
23gb|AF245200.1|AF245200 Pan troglodytes troglodytes isolate 14 ap... 42 1.8
24gb|AF245199.1|AF245199 Pan troglodytes troglodytes isolate 13 ap... 42 1.8
25gb|AF245198.1|AF245198 Pan troglodytes schweinfurthii isolate 12... 42 1.8
26gb|AF245197.1|AF245197 Pan troglodytes troglodytes isolate 11 ap... 42 1.8
27gb|AF245196.1|AF245196 Pan troglodytes troglodytes isolate 10 ap... 42 1.8
28gb|AF245195.1|AF245195 Pan troglodytes troglodytes isolate 9 apo... 42 1.8
29gb|AF245194.1|AF245194 Pan troglodytes troglodytes isolate 8 sub... 42 1.8
30gb|AF245193.1|AF245193 Pan troglodytes verus isolate 7 apolipopr... 42 1.8
31gb|AF245192.1|AF245192 Pan troglodytes troglodytes isolate 6 apo... 42 1.8
32gb|AF245191.1|AF245191 Pan troglodytes troglodytes isolate 5 apo... 42 1.8
33gb|AF245190.1|AF245190 Pan troglodytes troglodytes isolate 4 apo... 42 1.8
34gb|AF245189.1|AF245189 Pan troglodytes schweinfurthii isolate 18... 42 1.8
35gb|AF245188.1|AF245188 Pan troglodytes troglodytes isolate 3 apo... 42 1.8
36gb|AF245187.1|AF245187 Pan troglodytes verus isolate 2 apolipopr... 42 1.8
37gb|AF245186.1|AF245186 Pan troglodytes verus isolate 1 apolipopr... 42 1.8
38gb|AF245185.1|AF245185 Pan paniscus isolate 3 apolipoprotein B (... 42 1.8
39gb|AF245184.1|AF245184 Pan paniscus isolate 2 apolipoprotein B (... 42 1.8
40gb|AF245183.1|AF245183 Pan paniscus isolate 1 apolipoprotein B (... 42 1.8
41gb|AC004177.2|AC004177 Homo sapiens clone UWGC:y19c042 from 6p21... 42 1.8
42emb|AL031983.2|HS271M21 Human DNA sequence from clone RP1-271M21... 42 1.8
43gb|M19828.1|HUMAPB21 Human apolipoprotein B-100 (apoB) gene, exo... 42 1.8
44emb|X04867.1|HSB100AI Human apolipoprotein B-100 gene intron Ai ... 42 1.8
45ref|XM_421528.1| PREDICTED: Gallus gallus LOC423645 (LOC423645),... 40 7.0
46gb|AC150309.1| Latimeria menadoensis clone VMRC4-39G19, complete... 40 7.0
47gb|AC126608.20| Mus musculus chromosome 19, clone RP24-166L20, c... 40 7.0
48gb|AC172242.3| Gallus gallus BAC clone CH261-162M6 from chromoso... 40 7.0
49ref|XM_542185.2| PREDICTED: Canis familiaris similar to small gl... 40 7.0
50emb|AJ298054.1|MMA298054 Mus musculus Ly57 gene for lymphocyte a... 40 7.0
51gb|AC123029.3| Mus musculus BAC clone RP24-571B18 from chromosom... 40 7.0
52gb|AC121874.2| Mus musculus BAC clone RP24-124K16 from 18, compl... 40 7.0
53gb|AC004519.1| Homo sapiens BAC clone CTB-41H4 from 7, complete ... 40 7.0
54gb|AC138714.4| Mus musculus chromosome 18 clone RP23-406C12, com... 40 7.0
55emb|AL390718.11| Human DNA sequence from clone RP11-502H18 on ch... 40 7.0
56emb|AL109626.6|HSJ601K24 Human DNA sequence from clone RP4-601K2... 40 7.0
57gb|AC183604.3| Pan troglodytes BAC clone CH251-346L15 from chrom... 40 7.0
58gb|AC183284.3| Pan troglodytes BAC clone CH251-413D13 from chrom... 40 7.0
59dbj|AK172016.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 7.0
60emb|CR388391.4| Mouse DNA sequence from clone RP23-293H4 on chro... 40 7.0
61gb|AC153145.4| Mus musculus BAC clone RP23-222C3 from chromosome... 40 7.0
62gb|AC026124.35| Homo sapiens 12 BAC RP11-305O6 (Roswell Park Can... 40 7.0
63dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
64dbj|AP004051.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
65dbj|AP004266.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
66gb|AC006031.2|AC006031 Homo sapiens BAC clone RP11-44G14 from 7q... 40 7.0
67emb|AL929114.8| Zebrafish DNA sequence from clone CH211-133L11 i... 40 7.0 
>gb|AY722764.1| Galaxea fascularis clone PEN406.1 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, 5.8S ribosomal
           RNA gene, and internal transcribed spacer 2, complete
           sequence; and 28S ribosomal RNA gene, partial sequence
          Length = 1122

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 50  gtctgccagcctgcctgcttcccaga 75
           |||||||||||||||||| |||||||
Sbjct: 413 gtctgccagcctgcctgcctcccaga 388
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 417      acattcaggtttcaagaatggg 438
                ||||||||||||||||||||||
Sbjct: 12653085 acattcaggtttcaagaatggg 12653064
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>gb|AC123935.4| Mus musculus BAC clone RP23-354J3 from chromosome 13, complete sequence
          Length = 219370

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 205    agttcatgtgtttgttttattt 226
              ||||||||||||||||||||||
Sbjct: 134047 agttcatgtgtttgttttattt 134068
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>emb|AL024495.1|HS404L14 Human DNA sequence from clone RP3-404L14 on chromosome 22q12.1-12.3
             Contains STSs and GSSs, complete sequence
          Length = 106025

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 55    ccagcctgcctgcttcccagag 76
             ||||||||||||||||||||||
Sbjct: 15005 ccagcctgcctgcttcccagag 15026
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>gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0030D15, from chromosome 3, complete sequence
          Length = 151972

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 417   acattcaggtttcaagaatggg 438
             ||||||||||||||||||||||
Sbjct: 23904 acattcaggtttcaagaatggg 23925
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 417      acattcaggtttcaagaatggg 438
                ||||||||||||||||||||||
Sbjct: 12649848 acattcaggtttcaagaatggg 12649827
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>gb|AC121491.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBb0050D18, complete sequence
          Length = 126350

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 417  acattcaggtttcaagaatggg 438
            ||||||||||||||||||||||
Sbjct: 7538 acattcaggtttcaagaatggg 7517
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>gb|AC021016.5| Homo sapiens BAC clone RP11-378A13 from 2, complete sequence
          Length = 191755

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 44    tgtcccgtctgccagcctgcc 64
             |||||||||||||||||||||
Sbjct: 52010 tgtcccgtctgccagcctgcc 51990
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>emb|BX000531.11| Human DNA sequence from clone DAQB-12N14 on chromosome 6 Contains the
             OR2H1 gene for olfactory receptor, family 2, subfamily H,
             member 1, the UBDP1 pseudogene for ubiquitin D pseudogene
             1, the MAS1L gene for MAS1 oncogene-like, the RPS17P1
             pseudogene for ribosomal protein S17 pseudogene 1 and the
             DAQB-12N14.5 gene for a novel transcript, complete
             sequence
          Length = 89139

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 428   tcaagaatgggctagaagaac 448
             |||||||||||||||||||||
Sbjct: 78021 tcaagaatgggctagaagaac 78001
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>emb|BX247947.4| Human DNA sequence from clone DASS-372E1 on chromosome 6, complete
             sequence
          Length = 112061

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 428   tcaagaatgggctagaagaac 448
             |||||||||||||||||||||
Sbjct: 81805 tcaagaatgggctagaagaac 81785
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>emb|AL662860.3| Human DNA sequence from clone XXbac-158F21 on chromosome 6 contains a
             MAS1 oncogene pseudogene, complete sequence
          Length = 49694

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 428   tcaagaatgggctagaagaac 448
             |||||||||||||||||||||
Sbjct: 21907 tcaagaatgggctagaagaac 21887
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>emb|AL662869.2| Human DNA sequence from clone XXbac-128A13 on chromosome 6 contains the
              OR12D2, OR11A1, OR10C1 and OR2H1 genes for olfactory
              receptor, family 12, subfamily D, member 2, family 11,
              subfamily A, member 1, family 10, subfamily C, member 1,
              family 2, subfamily H, member 1, the gene for MAS-related G
              protein-coupled receptor (MRG), the OR12D1P pseudogene for
              olfactory receptor, family 12, subfamily D, member 1, a
              diubiquitin pseudogene and a ribosomal protein S17 (RPS17)
              pseudogene, complete sequence
          Length = 133836

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 428    tcaagaatgggctagaagaac 448
              |||||||||||||||||||||
Sbjct: 129163 tcaagaatgggctagaagaac 129143
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>gb|AY324608.1| Homo sapiens apolipoprotein B (including Ag(x) antigen) (APOB) gene,
             complete cds
          Length = 44602

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 204   cagttcatgtgtttgttttat 224
             |||||||||||||||||||||
Sbjct: 42557 cagttcatgtgtttgttttat 42537
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>emb|CR388393.8| Human DNA sequence from clone DADB-136A24 on chromosome 6, complete
              sequence
          Length = 159366

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 428    tcaagaatgggctagaagaac 448
              |||||||||||||||||||||
Sbjct: 153962 tcaagaatgggctagaagaac 153942
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>emb|CR759768.2| Human DNA sequence from clone DAMC-143I21 on chromosome 6, complete
              sequence
          Length = 123752

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 428    tcaagaatgggctagaagaac 448
              |||||||||||||||||||||
Sbjct: 108609 tcaagaatgggctagaagaac 108589
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>emb|CR759956.2| Human DNA sequence from clone DAAP-341G9 on chromosome 6, complete
             sequence
          Length = 81080

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 428   tcaagaatgggctagaagaac 448
             |||||||||||||||||||||
Sbjct: 75011 tcaagaatgggctagaagaac 74991
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>emb|BX247906.8| Zebrafish DNA sequence from clone DKEY-9O22 in linkage group 24,
             complete sequence
          Length = 213917

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 210   atgtgtttgttttatttcggc 230
             |||||||||||||||||||||
Sbjct: 38534 atgtgtttgttttatttcggc 38514
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>emb|BX927223.9| Human DNA sequence from clone DAMA-380P17 on chromosome 6, complete
             sequence
          Length = 83649

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 428   tcaagaatgggctagaagaac 448
             |||||||||||||||||||||
Sbjct: 17191 tcaagaatgggctagaagaac 17171
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>gb|AC115619.3| Homo sapiens BAC clone RP11-116D2 from 2, complete sequence
          Length = 45556

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 204   cagttcatgtgtttgttttat 224
             |||||||||||||||||||||
Sbjct: 42280 cagttcatgtgtttgttttat 42300
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>gb|AF245203.1|AF245203 Pan troglodytes schweinfurthii isolate 17 apolipoprotein B (APOB)
           gene, exons 28 and 29 and partial cds
          Length = 1060

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 cagttcatgtgtttgttttat 224
           |||||||||||||||||||||
Sbjct: 839 cagttcatgtgtttgttttat 819
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>gb|AF245202.1|AF245202 Pan troglodytes troglodytes isolate 16 apolipoprotein B (APOB)
           gene, exons 28 and 29 and partial cds
          Length = 1060

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 cagttcatgtgtttgttttat 224
           |||||||||||||||||||||
Sbjct: 839 cagttcatgtgtttgttttat 819
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>gb|AF245201.1|AF245201 Pan troglodytes troglodytes isolate 15 apolipoprotein B (APOB)
           gene, exons 28 and 29 and partial cds
          Length = 1060

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 cagttcatgtgtttgttttat 224
           |||||||||||||||||||||
Sbjct: 839 cagttcatgtgtttgttttat 819
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>gb|AF245200.1|AF245200 Pan troglodytes troglodytes isolate 14 apolipoprotein B (APOB)
           gene, exons 28 and 29 and partial cds
          Length = 1060

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 cagttcatgtgtttgttttat 224
           |||||||||||||||||||||
Sbjct: 839 cagttcatgtgtttgttttat 819
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>gb|AF245199.1|AF245199 Pan troglodytes troglodytes isolate 13 apolipoprotein B (APOB)
           gene, exons 28 and 29 and partial cds
          Length = 1060

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 cagttcatgtgtttgttttat 224
           |||||||||||||||||||||
Sbjct: 839 cagttcatgtgtttgttttat 819
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>gb|AF245198.1|AF245198 Pan troglodytes schweinfurthii isolate 12 apolipoprotein B (APOB)
           gene, exons 28 and 29 and partial cds
          Length = 1060

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 cagttcatgtgtttgttttat 224
           |||||||||||||||||||||
Sbjct: 839 cagttcatgtgtttgttttat 819
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>gb|AF245197.1|AF245197 Pan troglodytes troglodytes isolate 11 apolipoprotein B (APOB)
           gene, exons 28 and 29 and partial cds
          Length = 1060

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 cagttcatgtgtttgttttat 224
           |||||||||||||||||||||
Sbjct: 839 cagttcatgtgtttgttttat 819
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>gb|AF245196.1|AF245196 Pan troglodytes troglodytes isolate 10 apolipoprotein B (APOB)
           gene, exons 28 and 29 and partial cds
          Length = 1060

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 cagttcatgtgtttgttttat 224
           |||||||||||||||||||||
Sbjct: 839 cagttcatgtgtttgttttat 819
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>gb|AF245195.1|AF245195 Pan troglodytes troglodytes isolate 9 apolipoprotein B (APOB) gene,
           exons 28 and 29 and partial cds
          Length = 1060

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 cagttcatgtgtttgttttat 224
           |||||||||||||||||||||
Sbjct: 839 cagttcatgtgtttgttttat 819
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>gb|AF245194.1|AF245194 Pan troglodytes troglodytes isolate 8 sub-species troglodytes
           apolipoprotein B (APOB) gene, exons 28 and 29 and
           partial cds
          Length = 1060

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 cagttcatgtgtttgttttat 224
           |||||||||||||||||||||
Sbjct: 839 cagttcatgtgtttgttttat 819
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>gb|AF245193.1|AF245193 Pan troglodytes verus isolate 7 apolipoprotein B (APOB) gene, exons
           28 and 29 and partial cds
          Length = 1060

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 cagttcatgtgtttgttttat 224
           |||||||||||||||||||||
Sbjct: 839 cagttcatgtgtttgttttat 819
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>gb|AF245192.1|AF245192 Pan troglodytes troglodytes isolate 6 apolipoprotein B (APOB) gene,
           exons 28 and 29 and partial cds
          Length = 1060

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 cagttcatgtgtttgttttat 224
           |||||||||||||||||||||
Sbjct: 839 cagttcatgtgtttgttttat 819
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>gb|AF245191.1|AF245191 Pan troglodytes troglodytes isolate 5 apolipoprotein B (APOB) gene,
           exons 28 and 29 and partial cds
          Length = 1060

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 cagttcatgtgtttgttttat 224
           |||||||||||||||||||||
Sbjct: 839 cagttcatgtgtttgttttat 819
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>gb|AF245190.1|AF245190 Pan troglodytes troglodytes isolate 4 apolipoprotein B (APOB) gene,
           exons 28 and 29 and partial cds
          Length = 1060

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 cagttcatgtgtttgttttat 224
           |||||||||||||||||||||
Sbjct: 839 cagttcatgtgtttgttttat 819
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>gb|AF245189.1|AF245189 Pan troglodytes schweinfurthii isolate 18 apolipoprotein B (APOB)
           gene, exons 28 and 29 and partial cds
          Length = 1060

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 cagttcatgtgtttgttttat 224
           |||||||||||||||||||||
Sbjct: 839 cagttcatgtgtttgttttat 819
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>gb|AF245188.1|AF245188 Pan troglodytes troglodytes isolate 3 apolipoprotein B (APOB) gene,
           exons 28 and 29 and partial cds
          Length = 1060

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 cagttcatgtgtttgttttat 224
           |||||||||||||||||||||
Sbjct: 839 cagttcatgtgtttgttttat 819
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>gb|AF245187.1|AF245187 Pan troglodytes verus isolate 2 apolipoprotein B (APOB) gene, exons
           28 and 29 and partial cds
          Length = 1060

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 cagttcatgtgtttgttttat 224
           |||||||||||||||||||||
Sbjct: 839 cagttcatgtgtttgttttat 819
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>gb|AF245186.1|AF245186 Pan troglodytes verus isolate 1 apolipoprotein B (APOB) gene, exons
           28 and 29 and partial cds
          Length = 1060

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 cagttcatgtgtttgttttat 224
           |||||||||||||||||||||
Sbjct: 839 cagttcatgtgtttgttttat 819
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>gb|AF245185.1|AF245185 Pan paniscus isolate 3 apolipoprotein B (APOB) gene, exons 28 and
           29 and partial cds
          Length = 1060

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 cagttcatgtgtttgttttat 224
           |||||||||||||||||||||
Sbjct: 839 cagttcatgtgtttgttttat 819
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>gb|AF245184.1|AF245184 Pan paniscus isolate 2 apolipoprotein B (APOB) gene, exons 28 and
           29 and partial cds
          Length = 1060

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 cagttcatgtgtttgttttat 224
           |||||||||||||||||||||
Sbjct: 839 cagttcatgtgtttgttttat 819
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>gb|AF245183.1|AF245183 Pan paniscus isolate 1 apolipoprotein B (APOB) gene, exons 28 and
           29 and partial cds
          Length = 1060

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 cagttcatgtgtttgttttat 224
           |||||||||||||||||||||
Sbjct: 839 cagttcatgtgtttgttttat 819
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>gb|AC004177.2|AC004177 Homo sapiens clone UWGC:y19c042 from 6p21, complete sequence
          Length = 38596

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 428   tcaagaatgggctagaagaac 448
             |||||||||||||||||||||
Sbjct: 26673 tcaagaatgggctagaagaac 26693
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>emb|AL031983.2|HS271M21 Human DNA sequence from clone RP1-271M21 on chromosome 6p21.31-22.2
             Contains a MAS1 oncogene pseudogene, the OR2H2 gene for
             olfactory receptor 2H2, olfactory receptor 2I1 and 2H5
             pseudogenes OR2I1P and OR2H5P, the gene for diubiquitin,
             an RPL13A (60S Ribosomal Protein L13A) pseudogene, the
             GABBR1 gene for gamma-aminobutyric acid (GABA) B receptor
             1 and an SMT3H1 or SMT3H2 (SMT3 (suppressor of mif two 3,
             yeast) homolog) pseudogene and three CpG islands, complete
             sequence
          Length = 134292

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 428   tcaagaatgggctagaagaac 448
             |||||||||||||||||||||
Sbjct: 19610 tcaagaatgggctagaagaac 19590
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>gb|M19828.1|HUMAPB21 Human apolipoprotein B-100 (apoB) gene, exons 22 through 29
          Length = 14635

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 204   cagttcatgtgtttgttttat 224
             |||||||||||||||||||||
Sbjct: 12590 cagttcatgtgtttgttttat 12570
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>emb|X04867.1|HSB100AI Human apolipoprotein B-100 gene intron Ai and flanking regions
          Length = 1048

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 cagttcatgtgtttgttttat 224
           |||||||||||||||||||||
Sbjct: 850 cagttcatgtgtttgttttat 830
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>ref|XM_421528.1| PREDICTED: Gallus gallus LOC423645 (LOC423645), mRNA
          Length = 876

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 182 cttgctccttttctttctggccca 205
           |||| |||||||||||||||||||
Sbjct: 289 cttgatccttttctttctggccca 266
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>gb|AC150309.1| Latimeria menadoensis clone VMRC4-39G19, complete sequence
          Length = 196157

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    agttcttattctcatctgaa 94
             ||||||||||||||||||||
Sbjct: 88164 agttcttattctcatctgaa 88183
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>gb|AC126608.20| Mus musculus chromosome 19, clone RP24-166L20, complete sequence
          Length = 139126

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 467   tcccgagaaaaggcactcaa 486
             ||||||||||||||||||||
Sbjct: 58962 tcccgagaaaaggcactcaa 58943
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>gb|AC172242.3| Gallus gallus BAC clone CH261-162M6 from chromosome ul, complete sequence
          Length = 252782

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 182    cttgctccttttctttctggccca 205
              |||| |||||||||||||||||||
Sbjct: 216970 cttgatccttttctttctggccca 216947
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>ref|XM_542185.2| PREDICTED: Canis familiaris similar to small glutamine-rich
           tetratricopeptide (LOC485067), mRNA
          Length = 1091

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 449 cttcaaagttttctaccttc 468
           ||||||||||||||||||||
Sbjct: 359 cttcaaagttttctaccttc 340
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>emb|AJ298054.1|MMA298054 Mus musculus Ly57 gene for lymphocyte antigen 57
          Length = 71456

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 467   tcccgagaaaaggcactcaa 486
             ||||||||||||||||||||
Sbjct: 30626 tcccgagaaaaggcactcaa 30645
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>gb|AC123029.3| Mus musculus BAC clone RP24-571B18 from chromosome 8, complete sequence
          Length = 154235

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 49    cgtctgccagcctgcctgcttccc 72
             ||||||||||| ||||||||||||
Sbjct: 76956 cgtctgccagcttgcctgcttccc 76979
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>gb|AC121874.2| Mus musculus BAC clone RP24-124K16 from 18, complete sequence
          Length = 164190

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   gaggcttgctccttttcttt 197
             ||||||||||||||||||||
Sbjct: 15348 gaggcttgctccttttcttt 15329
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>gb|AC004519.1| Homo sapiens BAC clone CTB-41H4 from 7, complete sequence
          Length = 107889

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 207  ttcatgtgtttgttttattt 226
            ||||||||||||||||||||
Sbjct: 6267 ttcatgtgtttgttttattt 6248
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>gb|AC138714.4| Mus musculus chromosome 18 clone RP23-406C12, complete sequence
          Length = 191928

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    gaggcttgctccttttcttt 197
              ||||||||||||||||||||
Sbjct: 129483 gaggcttgctccttttcttt 129464
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>emb|AL390718.11| Human DNA sequence from clone RP11-502H18 on chromosome 1 Contains the
             3' end of a novel gene, a novel gene, the QSCN6 gene for
             quiescin Q6 and a CpG island, complete sequence
          Length = 176123

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    ccagcctgcctgcttcccag 74
             ||||||||||||||||||||
Sbjct: 83451 ccagcctgcctgcttcccag 83470
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>emb|AL109626.6|HSJ601K24 Human DNA sequence from clone RP4-601K24 on chromosome 1p22.3-31.2,
             complete sequence
          Length = 129467

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    tgcctgcttcccagagttct 80
             ||||||||||||||||||||
Sbjct: 97730 tgcctgcttcccagagttct 97711
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>gb|AC183604.3| Pan troglodytes BAC clone CH251-346L15 from chromosome 1, complete
            sequence
          Length = 143809

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 61   tgcctgcttcccagagttct 80
            ||||||||||||||||||||
Sbjct: 3819 tgcctgcttcccagagttct 3800
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>gb|AC183284.3| Pan troglodytes BAC clone CH251-413D13 from chromosome 7, complete
              sequence
          Length = 171441

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     tgcctgcttcccagagttct 80
              ||||||||||||||||||||
Sbjct: 167083 tgcctgcttcccagagttct 167102
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>dbj|AK172016.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830029J19 product:B-cell linker, full
            insert sequence
          Length = 4149

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 467  tcccgagaaaaggcactcaa 486
            ||||||||||||||||||||
Sbjct: 1154 tcccgagaaaaggcactcaa 1173
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>emb|CR388391.4| Mouse DNA sequence from clone RP23-293H4 on chromosome 2, complete
             sequence
          Length = 39907

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    cagcctgcctgcttcccaga 75
             ||||||||||||||||||||
Sbjct: 14395 cagcctgcctgcttcccaga 14376
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>gb|AC153145.4| Mus musculus BAC clone RP23-222C3 from chromosome 18, complete sequence
          Length = 193382

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    gaggcttgctccttttcttt 197
              ||||||||||||||||||||
Sbjct: 129476 gaggcttgctccttttcttt 129457
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>gb|AC026124.35| Homo sapiens 12 BAC RP11-305O6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 181835

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 428    tcaagaatgggctagaagaa 447
              ||||||||||||||||||||
Sbjct: 156835 tcaagaatgggctagaagaa 156816
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 206      gttcatgtgtttgttttatt 225
                ||||||||||||||||||||
Sbjct: 18287547 gttcatgtgtttgttttatt 18287528
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>dbj|AP004051.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1218_C12
          Length = 105861

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   gttcatgtgtttgttttatt 225
             ||||||||||||||||||||
Sbjct: 90790 gttcatgtgtttgttttatt 90771
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>dbj|AP004266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0038F10
          Length = 153929

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   gttcatgtgtttgttttatt 225
             ||||||||||||||||||||
Sbjct: 17042 gttcatgtgtttgttttatt 17023
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>gb|AC006031.2|AC006031 Homo sapiens BAC clone RP11-44G14 from 7q11.23-21.1, complete sequence
          Length = 170624

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    tgcctgcttcccagagttct 80
             ||||||||||||||||||||
Sbjct: 94239 tgcctgcttcccagagttct 94220
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>emb|AL929114.8| Zebrafish DNA sequence from clone CH211-133L11 in linkage group 1,
              complete sequence
          Length = 180158

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 495    atttcctcctcctccggttg 514
              ||||||||||||||||||||
Sbjct: 166450 atttcctcctcctccggttg 166469


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,712,964
Number of Sequences: 3902068
Number of extensions: 5712964
Number of successful extensions: 120072
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119857
Number of HSP's gapped (non-prelim): 215
length of query: 519
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 496
effective length of database: 17,143,297,704
effective search space: 8503075661184
effective search space used: 8503075661184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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