ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd23d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FSHR_EQUAS (Q95179) Follicle-stimulating hormone receptor precur... 31 2.3
2HYI_ECOLI (P30147) Hydroxypyruvate isomerase (EC 5.3.1.22) 30 4.0
3Y3536_METJA (Q60257) UPF0310 protein MJECL36 30 4.0

>FSHR_EQUAS (Q95179) Follicle-stimulating hormone receptor precursor (FSH-R)|
           (Follitropin receptor)
          Length = 687

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 383 SLQAMLEFGVVIHQQVCEQKERLRLCFQSQKPSLPQ*FP 267
           SL A L  G   H QVC    R+ LC +S+   +P   P
Sbjct: 7   SLLAFLSLGSGCHHQVCHYSNRVFLCQESKVTEIPSDLP 45



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>HYI_ECOLI (P30147) Hydroxypyruvate isomerase (EC 5.3.1.22)|
          Length = 258

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +2

Query: 290 AFAIGNKALAALFVHTPAGELQRQIRAWLAENFDF 394
           A A+GNK +  L   TPAG    QI A L EN  +
Sbjct: 94  ARALGNKKINCLVGKTPAGFSSEQIHATLVENLRY 128



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>Y3536_METJA (Q60257) UPF0310 protein MJECL36|
          Length = 144

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = +2

Query: 155 FKVNIKQ----EKKSKFSSIVLKLRGI-EEETWRQHVTGGKLREITEEAKAFAIGN 307
           ++V +K+    E    F  ++ KL+ I  ++ W  H+ G  +REI EE     +GN
Sbjct: 89  YRVKLKEIKVFEPPINFKELIPKLKFITNKKRWSGHLMGKAMREIPEEDYKLIVGN 144


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,346,567
Number of Sequences: 219361
Number of extensions: 1179478
Number of successful extensions: 3054
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3053
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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