>TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to ribosomal RNA|
           protein 1)
          Length = 124

 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 24/59 (40%), Positives = 33/59 (55%)
 Frame = -1

Query: 390 ESPAHSSTGTRSEITFPSHCLGAQHGFTFYFTTHWGFFSPFPHGTTSLSVTQEYLALQG 214
           +SP H     R++ T         + FT++FT    FFS F H T SLSV+++YLAL G
Sbjct: 3   DSPTHKEQ--RAQNTMSDQMPFPFNNFTYFFTLFSKFFSSFHHCTCSLSVSRQYLALDG 59

>TAR1_KLULA (Q6CQE5) Protein TAR1|
          Length = 109

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = -1

Query: 318 HGFTFYFTTHWGFFSPFPHGTTSLSVTQEYLALQG 214
           + FT++FT    FFS F H T SLSV+++YLAL G
Sbjct: 10  NNFTYFFTLFSKFFSSFHHCTCSLSVSRQYLALDG 44

>RPOA_PRRS1 (Q9YN02) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:|
           Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha
           papain-like cysteine proteinase (EC 3.4.22.-)
           (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase
           (EC 3.4.22.-) (PCP
          Length = 3966

 Score = 33.1 bits (74), Expect = 0.58
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -2

Query: 434 TAPVGSVPLTKPLPMSRRLILQQARGQRSL--SPPTAWELSTVSRSISLPT 288
           T PV S+P  KP+P  RR +        SL    P +WE   VS  + LPT
Sbjct: 824 TKPVKSLPERKPVPAPRRKVGPDCGSPVSLGGDVPNSWEDLAVSSPLDLPT 874

>RPOA_PRRSR (Q9WJB2) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:|
            Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha
            papain-like cysteine proteinase (EC 3.4.22.-)
            (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase
            (EC 3.4.22.-) (PCP
          Length = 3960

 Score = 33.1 bits (74), Expect = 0.58
 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
 Frame = -2

Query: 434  TAPVGSVPLTKPLPMSRRLILQQARGQRSL--SPPTAWELSTVSRSISLPTGGSFHLSLT 261
            T PV S+P  KP+P  RR +        SL    P +WE   VS    LPT        +
Sbjct: 824  TKPVKSLPERKPVPAPRRKVGSDCGSPVSLGGDVPNSWEDLAVSSPFDLPTPPEPATPSS 883

Query: 260  VLLRYRSPRSI*PCKVVLADSHGIP 186
             L+   SP+ I      L++   IP
Sbjct: 884  ELVIVSSPQCIFRPATPLSEPAPIP 908

>E41LA_HUMAN (Q9HCS5) Band 4.1-like protein 4A (NBL4 protein)|
          Length = 598

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = -1

Query: 519 PSFILVMDRSPRFGSISSDNRPIKTRFRYGSGGFRSLNQATAYESPAHSSTGTRSEITFP 340
           P F     R+P  GS +   +P++ R  + SG    L Q     S  ++S+G+ SE +  
Sbjct: 435 PKFPYTRRRNPSCGSDNDSVQPVRRRKAHNSGEDSDLKQRRRSRSRCNTSSGSESENSNR 494

Query: 339 SH 334
            H
Sbjct: 495 EH 496

>FAEB_ASPNG (Q8WZI8) Feruloyl esterase B precursor (EC 3.1.1.73) (Ferulic acid|
           esterase B) (FAEB) (FAE-I) (Cinnamoyl esterase) (CinnAE)
          Length = 521

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
 Frame = +1

Query: 295 SEIERETVLSSQAVGGESD---L*PRAC*RMSRRLIGSGLVKGTEPTGAVAKASLNRAIV 465
           S I +E V     V G  D     P  C  +  RLI  G   GT        A +NRA+ 
Sbjct: 243 SVIHQEIVRQCDLVDGALDGIIEDPDFCAPVIERLICDGTTNGTSCITGAQAAKVNRALS 302

Query: 466 TAYGPE 483
             YGP+
Sbjct: 303 DFYGPD 308

>TILS_RHIME (Q92JY3) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 453

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 23/71 (32%), Positives = 34/71 (47%)
 Frame = -2

Query: 572 LIR*FFNISRFGPLLSFIQASSWSWIDHPGSGP*AVTIALLRLAFATAPVGSVPLTKPLP 393
           ++R F  ++R   + SF+QA   SWID P +   A     +R   AT+  G +P   PL 
Sbjct: 172 VLRPFLGLAR-AEIRSFLQARGVSWIDDPSNANPAFERVRVRARIATS--GGMP--TPLG 226

Query: 392 MSRRLILQQAR 360
             R+     AR
Sbjct: 227 NGRQRAASSAR 237

>TRI42_HUMAN (Q8IWZ5) Tripartite motif protein 42|
          Length = 723

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -1

Query: 441 FRYGSGGFRSLNQATAYESPAHSSTGTRSEITFPSHCLGAQH 316
           F  G    RS   +     P HS T    ++TF +H LG QH
Sbjct: 490 FPTGPKKVRSSGDSLPSPYPVHSETMIARKVTFSTHSLGNQH 531


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,704,004
Number of Sequences: 219361
Number of extensions: 1877010
Number of successful extensions: 4162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4144
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)