ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd22n23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ224324.1|HVH224324 Hordeum vulgare cv. Haisa mRNA for cp31... 934 0.0
2ref|XM_483744.1| Oryza sativa (japonica cultivar-group), mRNA 204 2e-49
3ref|XM_483743.1| Oryza sativa (japonica cultivar-group), mRNA 204 2e-49
4ref|XM_507331.1| PREDICTED Oryza sativa (japonica cultivar-group... 204 2e-49
5dbj|AK105901.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 2e-49
6dbj|AK101214.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 2e-49
7dbj|AK070743.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 2e-49
8gb|AY108263.1| Zea mays PCO100700 mRNA sequence 168 1e-38
9dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
10dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
11dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 119 9e-24
12dbj|AP006171.2| Oryza sativa (japonica cultivar-group) genomic D... 119 9e-24
13dbj|AP006170.2| Oryza sativa (japonica cultivar-group) genomic D... 119 9e-24
14dbj|AK104354.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 9e-24
15dbj|AK069121.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 9e-24
16emb|Z11488.1|ZMNBPG Z.mays gene for nucleic acid binding protein 113 6e-22
17gb|AY111861.1| Zea mays CL2457_1 mRNA sequence 113 6e-22
18gb|M74566.1|MZENBPAA Zea mays nucleic acid-binding protein (NBP) 105 1e-19
19gb|BT019263.1| Zea mays clone Contig936.F mRNA sequence 90 8e-15
20emb|AJ005286.1|HVH005286 Hordeum vulgare cv. Haisa mRNA for cp31... 80 8e-12
21emb|AJ234452.1|HVU234452 Hordeum vulgare partial mRNA; clone cMW... 76 1e-10
22dbj|D38485.1| Triticum aestivum mRNA for Ps16 protein, complete cds 62 2e-06
23emb|X57079.1|NSCHRIB N.sylvestris DNA for 31kD chloroplast ribon... 60 8e-06
24emb|X53942.1|NSRNP31 Tobacco mRNA for 31 kDa chloroplast ribonuc... 60 8e-06
25ref|NM_129093.2| Arabidopsis thaliana RNA binding / nucleic acid... 50 0.007
26gb|BT000365.1| Arabidopsis thaliana putative chloroplast RNA bin... 50 0.007
27gb|AC005314.3| Arabidopsis thaliana chromosome 2 clone T32F12 ma... 50 0.007
28gb|AY042799.1| Arabidopsis thaliana putative chloroplast RNA bin... 50 0.007
29ref|XM_464698.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.8
30ref|XM_464699.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.8
31dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
32gb|AC092614.2| Homo sapiens BAC clone RP11-192M8 from 2, complet... 42 1.8
33dbj|AP005826.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
34dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
35dbj|AK120313.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.8
36dbj|AK100904.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.8
37gb|AY107260.1| Zea mays PCO071008 mRNA sequence 42 1.8
38ref|XM_519003.1| PREDICTED: Pan troglodytes similar to HNRPA2B1 ... 40 7.0
39gb|AY022079.1| Oryza sativa microsatellite MRG4404 containing (T... 40 7.0
40gb|AC147302.2| Pan troglodytes BAC clone RP43-55L5 from 7, compl... 40 7.0
41gb|AC132367.3| Mus musculus BAC clone RP23-465K21 from chromosom... 40 7.0
42gb|BC000506.2| Homo sapiens heterogeneous nuclear ribonucleoprot... 40 7.0
43gb|AC150977.12| Medicago truncatula clone mth2-32m9, complete se... 40 7.0
44emb|BX649569.5| Human DNA sequence from clone RP11-204I2 on chro... 40 7.0
45emb|CR858535.1| Pongo pygmaeus mRNA; cDNA DKFZp469B1233 (from cl... 40 7.0
46emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4,... 40 7.0
47gb|U09121.1|AH005377S2 Human hnRNP protein A2 gene, exons 2-7 40 7.0
48ref|NM_031243.1| Homo sapiens heterogeneous nuclear ribonucleopr... 40 7.0
49ref|NM_002137.2| Homo sapiens heterogeneous nuclear ribonucleopr... 40 7.0
50gb|AC092562.4| Papio hamadryas BAC RP41-285I13 (Rosewell Park Ca... 40 7.0
51gb|AC010677.4| Homo sapiens chromosome 7 clone CTD-2304L4, compl... 40 7.0
52dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
53gb|AC126599.10| Mus musculus chromosome 3, clone RP24-487F9, com... 40 7.0
54gb|AF192348.1|AF192348 Saguinus oedipus vitamin D response eleme... 40 7.0
55emb|BX470088.11| Zebrafish DNA sequence from clone DKEY-171E12 i... 40 7.0
56dbj|AP004054.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
57dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
58emb|BX641084.1|HSM806891 Homo sapiens mRNA; cDNA DKFZp686K0732 (... 40 7.0
59dbj|AK129839.1| Homo sapiens cDNA FLJ26329 fis, clone HRT02026, ... 40 7.0
60dbj|AP002827.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 7.0
61emb|BX537494.1|HSM805860 Homo sapiens mRNA; cDNA DKFZp686G0349 (... 40 7.0
62gb|AC154237.1| Mus musculus BAC clone RP24-162O18 from 17, compl... 40 7.0
63gb|AC157955.2| Gallus gallus BAC clone TAM31-4B17 from chromosom... 40 7.0
64gb|AC158368.2| Gallus gallus BAC clone CH261-77E11 from chromoso... 40 7.0
65emb|BX005035.9| Human DNA sequence from clone RP11-133G22 on chr... 40 7.0
66dbj|D28877.1|HUMHNRNP Homo sapiens HNRPA2B1 gene for hnRNP prote... 40 7.0
67dbj|AP006535.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 7.0
68gb|M29064.1|HUMRNPB1A Human hnRNP B1 protein mRNA 40 7.0
69gb|M29065.1|HUMRNPA2A Human hnRNP A2 protein mRNA 40 7.0
70gb|L15080.1|CIPRNABP Mesembryanthemum crystallinum RNA-binding p... 40 7.0 
>emb|AJ224324.1|HVH224324 Hordeum vulgare cv. Haisa mRNA for cp31BHv protein
          Length = 1139

 Score =  934 bits (471), Expect = 0.0
 Identities = 494/504 (98%)
 Strand = Plus / Plus

                                                                        
Query: 2    gagacctcctcgacagtttgcatcttctttcagggcttatgttggtaacctgccatggca 61
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630  gagacctcctcgacagtttgcatcttctttcagggcttatgttggtaacctgccatggca 689

                                                                        
Query: 62   agcggaagactctaggttggtgcaaatgttcagcgagcatggggaagtagttaatgctac 121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690  agcggaagactctaggttggtgcaaatgttcagcgagcatggggaagtagttaatgctac 749

                                                                        
Query: 122  gatcgtgtatgacagagaaactgggcgttcgcgaggatttggttttgtaactatggcttc 181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750  gatcgtgtatgacagagaaactgggcgttcgcgaggatttggttttgtaactatggcttc 809

                                                                        
Query: 182  aaaggaggatcttgacagtgctatttcagcgcttgatggacaggagatggatggccgccc 241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810  aaaggaggatcttgacagtgctatttcagcgcttgatggacaggagatggatggccgccc 869

                                                                        
Query: 242  actccgagtgaacgttgcagcagagagaccacagcgagggttctgatgcggcgcagcggc 301
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 870  actccgagtgaacgttgcagcagagagaccacagcgagggttctgatgcggtgcagcggc 929

                                                                        
Query: 302  ggagagcatggcttggcgtttctcgtggacacatgggaacactgctgaaatgttactgca 361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930  ggagagcatggcttggcgtttctcgtggacacatgggaacactgctgaaatgttactgca 989

                                                                        
Query: 362  gaagactgaagcatgtcaccacttgaaactcccgcattagcctcctgatgctggctctcc 421
            ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 990  gaagactgaagcatgtcaccacttgaaactcccgcattagcctcccgatggtggctctcc 1049

                                                                        
Query: 422  tcccatcccatannnnnnncatgctttcgttcgctgctggtgtaatcatgttaatttctt 481
            ||||||||||||       |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 tcccatcccatatttttttcatgctttcgttcgctgctggtgtaatcatgttaatttctt 1109

                                    
Query: 482  gtcaataccatgagttcaactttt 505
            ||||||||||||||||||||||||
Sbjct: 1110 gtcaataccatgagttcaactttt 1133
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>ref|XM_483744.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 927

 Score =  204 bits (103), Expect = 2e-49
 Identities = 235/279 (84%)
 Strand = Plus / Plus

                                                                       
Query: 2   gagacctcctcgacagtttgcatcttctttcagggcttatgttggtaacctgccatggca 61
           |||||||||  | ||||||||  || ||||||||||||||||||| ||||||||||||||
Sbjct: 322 gagacctccaaggcagtttgctcctgctttcagggcttatgttggcaacctgccatggca 381

                                                                       
Query: 62  agcggaagactctaggttggtgcaaatgttcagcgagcatggggaagtagttaatgctac 121
           || ||| ||||||||| || ||||| |||||||||||||||| || || ||||| ||| |
Sbjct: 382 agtggatgactctaggctgctgcaattgttcagcgagcatggagaggtggttaacgcttc 441

                                                                       
Query: 122 gatcgtgtatgacagagaaactgggcgttcgcgaggatttggttttgtaactatggcttc 181
           | | || || || |||||| |||||||||| || ||||||||||||||  | ||||| ||
Sbjct: 442 ggttgtctacgatagagaatctgggcgttctcggggatttggttttgtttccatggcctc 501

                                                                       
Query: 182 aaaggaggatcttgacagtgctatttcagcgcttgatggacaggagatggatggccgccc 241
            |||||||| || ||   ||||||||| || ||||||||||||||  |||||||||||||
Sbjct: 502 caaggaggagctcgatgatgctatttctgcccttgatggacaggaattggatggccgccc 561

                                                  
Query: 242 actccgagtgaacgttgcagcagagagaccacagcgagg 280
           ||| |||||||| || ||||| ||| |||||||||||||
Sbjct: 562 acttcgagtgaatgtggcagctgagcgaccacagcgagg 600
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>ref|XM_483743.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1233

 Score =  204 bits (103), Expect = 2e-49
 Identities = 235/279 (84%)
 Strand = Plus / Plus

                                                                       
Query: 2   gagacctcctcgacagtttgcatcttctttcagggcttatgttggtaacctgccatggca 61
           |||||||||  | ||||||||  || ||||||||||||||||||| ||||||||||||||
Sbjct: 703 gagacctccaaggcagtttgctcctgctttcagggcttatgttggcaacctgccatggca 762

                                                                       
Query: 62  agcggaagactctaggttggtgcaaatgttcagcgagcatggggaagtagttaatgctac 121
           || ||| ||||||||| || ||||| |||||||||||||||| || || ||||| ||| |
Sbjct: 763 agtggatgactctaggctgctgcaattgttcagcgagcatggagaggtggttaacgcttc 822

                                                                       
Query: 122 gatcgtgtatgacagagaaactgggcgttcgcgaggatttggttttgtaactatggcttc 181
           | | || || || |||||| |||||||||| || ||||||||||||||  | ||||| ||
Sbjct: 823 ggttgtctacgatagagaatctgggcgttctcggggatttggttttgtttccatggcctc 882

                                                                       
Query: 182 aaaggaggatcttgacagtgctatttcagcgcttgatggacaggagatggatggccgccc 241
            |||||||| || ||   ||||||||| || ||||||||||||||  |||||||||||||
Sbjct: 883 caaggaggagctcgatgatgctatttctgcccttgatggacaggaattggatggccgccc 942

                                                  
Query: 242 actccgagtgaacgttgcagcagagagaccacagcgagg 280
           ||| |||||||| || ||||| ||| |||||||||||||
Sbjct: 943 acttcgagtgaatgtggcagctgagcgaccacagcgagg 981
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>ref|XM_507331.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1150_A11.19-2
           mRNA
          Length = 1302

 Score =  204 bits (103), Expect = 2e-49
 Identities = 235/279 (84%)
 Strand = Plus / Plus

                                                                       
Query: 2   gagacctcctcgacagtttgcatcttctttcagggcttatgttggtaacctgccatggca 61
           |||||||||  | ||||||||  || ||||||||||||||||||| ||||||||||||||
Sbjct: 697 gagacctccaaggcagtttgctcctgctttcagggcttatgttggcaacctgccatggca 756

                                                                       
Query: 62  agcggaagactctaggttggtgcaaatgttcagcgagcatggggaagtagttaatgctac 121
           || ||| ||||||||| || ||||| |||||||||||||||| || || ||||| ||| |
Sbjct: 757 agtggatgactctaggctgctgcaattgttcagcgagcatggagaggtggttaacgcttc 816

                                                                       
Query: 122 gatcgtgtatgacagagaaactgggcgttcgcgaggatttggttttgtaactatggcttc 181
           | | || || || |||||| |||||||||| || ||||||||||||||  | ||||| ||
Sbjct: 817 ggttgtctacgatagagaatctgggcgttctcggggatttggttttgtttccatggcctc 876

                                                                       
Query: 182 aaaggaggatcttgacagtgctatttcagcgcttgatggacaggagatggatggccgccc 241
            |||||||| || ||   ||||||||| || ||||||||||||||  |||||||||||||
Sbjct: 877 caaggaggagctcgatgatgctatttctgcccttgatggacaggaattggatggccgccc 936

                                                  
Query: 242 actccgagtgaacgttgcagcagagagaccacagcgagg 280
           ||| |||||||| || ||||| ||| |||||||||||||
Sbjct: 937 acttcgagtgaatgtggcagctgagcgaccacagcgagg 975
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>dbj|AK105901.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F09, full
           insert sequence
          Length = 1230

 Score =  204 bits (103), Expect = 2e-49
 Identities = 235/279 (84%)
 Strand = Plus / Plus

                                                                       
Query: 2   gagacctcctcgacagtttgcatcttctttcagggcttatgttggtaacctgccatggca 61
           |||||||||  | ||||||||  || ||||||||||||||||||| ||||||||||||||
Sbjct: 700 gagacctccaaggcagtttgctcctgctttcagggcttatgttggcaacctgccatggca 759

                                                                       
Query: 62  agcggaagactctaggttggtgcaaatgttcagcgagcatggggaagtagttaatgctac 121
           || ||| ||||||||| || ||||| |||||||||||||||| || || ||||| ||| |
Sbjct: 760 agtggatgactctaggctgctgcaattgttcagcgagcatggagaggtggttaacgcttc 819

                                                                       
Query: 122 gatcgtgtatgacagagaaactgggcgttcgcgaggatttggttttgtaactatggcttc 181
           | | || || || |||||| |||||||||| || ||||||||||||||  | ||||| ||
Sbjct: 820 ggttgtctacgatagagaatctgggcgttctcggggatttggttttgtttccatggcctc 879

                                                                       
Query: 182 aaaggaggatcttgacagtgctatttcagcgcttgatggacaggagatggatggccgccc 241
            |||||||| || ||   ||||||||| || ||||||||||||||  |||||||||||||
Sbjct: 880 caaggaggagctcgatgatgctatttctgcccttgatggacaggaattggatggccgccc 939

                                                  
Query: 242 actccgagtgaacgttgcagcagagagaccacagcgagg 280
           ||| |||||||| || ||||| ||| |||||||||||||
Sbjct: 940 acttcgagtgaatgtggcagctgagcgaccacagcgagg 978
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>dbj|AK101214.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031B04, full
           insert sequence
          Length = 927

 Score =  204 bits (103), Expect = 2e-49
 Identities = 235/279 (84%)
 Strand = Plus / Plus

                                                                       
Query: 2   gagacctcctcgacagtttgcatcttctttcagggcttatgttggtaacctgccatggca 61
           |||||||||  | ||||||||  || ||||||||||||||||||| ||||||||||||||
Sbjct: 322 gagacctccaaggcagtttgctcctgctttcagggcttatgttggcaacctgccatggca 381

                                                                       
Query: 62  agcggaagactctaggttggtgcaaatgttcagcgagcatggggaagtagttaatgctac 121
           || ||| ||||||||| || ||||| |||||||||||||||| || || ||||| ||| |
Sbjct: 382 agtggatgactctaggctgctgcaattgttcagcgagcatggagaggtggttaacgcttc 441

                                                                       
Query: 122 gatcgtgtatgacagagaaactgggcgttcgcgaggatttggttttgtaactatggcttc 181
           | | || || || |||||| |||||||||| || ||||||||||||||  | ||||| ||
Sbjct: 442 ggttgtctacgatagagaatctgggcgttctcggggatttggttttgtttccatggcctc 501

                                                                       
Query: 182 aaaggaggatcttgacagtgctatttcagcgcttgatggacaggagatggatggccgccc 241
            |||||||| || ||   ||||||||| || ||||||||||||||  |||||||||||||
Sbjct: 502 caaggaggagctcgatgatgctatttctgcccttgatggacaggaattggatggccgccc 561

                                                  
Query: 242 actccgagtgaacgttgcagcagagagaccacagcgagg 280
           ||| |||||||| || ||||| ||| |||||||||||||
Sbjct: 562 acttcgagtgaatgtggcagctgagcgaccacagcgagg 600
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>dbj|AK070743.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062K14, full
           insert sequence
          Length = 1302

 Score =  204 bits (103), Expect = 2e-49
 Identities = 235/279 (84%)
 Strand = Plus / Plus

                                                                       
Query: 2   gagacctcctcgacagtttgcatcttctttcagggcttatgttggtaacctgccatggca 61
           |||||||||  | ||||||||  || ||||||||||||||||||| ||||||||||||||
Sbjct: 697 gagacctccaaggcagtttgctcctgctttcagggcttatgttggcaacctgccatggca 756

                                                                       
Query: 62  agcggaagactctaggttggtgcaaatgttcagcgagcatggggaagtagttaatgctac 121
           || ||| ||||||||| || ||||| |||||||||||||||| || || ||||| ||| |
Sbjct: 757 agtggatgactctaggctgctgcaattgttcagcgagcatggagaggtggttaacgcttc 816

                                                                       
Query: 122 gatcgtgtatgacagagaaactgggcgttcgcgaggatttggttttgtaactatggcttc 181
           | | || || || |||||| |||||||||| || ||||||||||||||  | ||||| ||
Sbjct: 817 ggttgtctacgatagagaatctgggcgttctcggggatttggttttgtttccatggcctc 876

                                                                       
Query: 182 aaaggaggatcttgacagtgctatttcagcgcttgatggacaggagatggatggccgccc 241
            |||||||| || ||   ||||||||| || ||||||||||||||  |||||||||||||
Sbjct: 877 caaggaggagctcgatgatgctatttctgcccttgatggacaggaattggatggccgccc 936

                                                  
Query: 242 actccgagtgaacgttgcagcagagagaccacagcgagg 280
           ||| |||||||| || ||||| ||| |||||||||||||
Sbjct: 937 acttcgagtgaatgtggcagctgagcgaccacagcgagg 975
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>gb|AY108263.1| Zea mays PCO100700 mRNA sequence
          Length = 891

 Score =  168 bits (85), Expect = 1e-38
 Identities = 220/265 (83%)
 Strand = Plus / Plus

                                                                       
Query: 28  ctttcagggcttatgttggtaacctgccatggcaagcggaagactctaggttggtgcaaa 87
           ||||||| ||||||||||| ||| ||||||||||||  || ||||||||| |||||||  
Sbjct: 352 ctttcagagcttatgttggcaacttgccatggcaagttgatgactctaggctggtgcagt 411

                                                                       
Query: 88  tgttcagcgagcatggggaagtagttaatgctacgatcgtgtatgacagagaaactgggc 147
           |||||||||||||||| ||||| ||| |||||| | | || || ||||||||||||||||
Sbjct: 412 tgttcagcgagcatggagaagttgttgatgctaaggttgtctacgacagagaaactgggc 471

                                                                       
Query: 148 gttcgcgaggatttggttttgtaactatggcttcaaaggaggatcttgacagtgctattt 207
           | || |||||||| ||||||||| | ||||  ||||||||||| ||  |   ||||||||
Sbjct: 472 gctcacgaggattcggttttgtatcaatggtgtcaaaggaggaactcaatgatgctattt 531

                                                                       
Query: 208 cagcgcttgatggacaggagatggatggccgcccactccgagtgaacgttgcagcagaga 267
           | || || |||||||||||  |||| |||||||| || |||||||| |||||||||||| 
Sbjct: 532 cggccctagatggacaggaattggacggccgccctcttcgagtgaatgttgcagcagagc 591

                                    
Query: 268 gaccacagcgagggttctgatgcgg 292
           | |||||| | || || ||||||||
Sbjct: 592 ggccacagaggggcttttgatgcgg 616
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  151 bits (76), Expect = 3e-33
 Identities = 187/224 (83%)
 Strand = Plus / Minus

                                                                            
Query: 2        gagacctcctcgacagtttgcatcttctttcagggcttatgttggtaacctgccatggca 61
                |||||||||  | ||||||||  || ||||||||||||||||||| ||||||||||||||
Sbjct: 27873771 gagacctccaaggcagtttgctcctgctttcagggcttatgttggcaacctgccatggca 27873712

                                                                            
Query: 62       agcggaagactctaggttggtgcaaatgttcagcgagcatggggaagtagttaatgctac 121
                || ||| ||||||||| || ||||| |||||||||||||||| || || ||||| ||| |
Sbjct: 27873711 agtggatgactctaggctgctgcaattgttcagcgagcatggagaggtggttaacgcttc 27873652

                                                                            
Query: 122      gatcgtgtatgacagagaaactgggcgttcgcgaggatttggttttgtaactatggcttc 181
                | | || || || |||||| |||||||||| || ||||||||||||||  | ||||| ||
Sbjct: 27873651 ggttgtctacgatagagaatctgggcgttctcggggatttggttttgtttccatggcctc 27873592

                                                            
Query: 182      aaaggaggatcttgacagtgctatttcagcgcttgatggacagg 225
                 |||||||| || ||   ||||||||| || |||||||||||||
Sbjct: 27873591 caaggaggagctcgatgatgctatttctgcccttgatggacagg 27873548



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                    
Query: 229      tggatggccgcccactccgagtgaacgttgcagcagagagaccacagcgagg 280
                |||||||||||||||| |||||||| || ||||| ||| |||||||||||||
Sbjct: 27873403 tggatggccgcccacttcgagtgaatgtggcagctgagcgaccacagcgagg 27873352
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>dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1150_A11
          Length = 142010

 Score =  151 bits (76), Expect = 3e-33
 Identities = 187/224 (83%)
 Strand = Plus / Minus

                                                                         
Query: 2     gagacctcctcgacagtttgcatcttctttcagggcttatgttggtaacctgccatggca 61
             |||||||||  | ||||||||  || ||||||||||||||||||| ||||||||||||||
Sbjct: 81849 gagacctccaaggcagtttgctcctgctttcagggcttatgttggcaacctgccatggca 81790

                                                                         
Query: 62    agcggaagactctaggttggtgcaaatgttcagcgagcatggggaagtagttaatgctac 121
             || ||| ||||||||| || ||||| |||||||||||||||| || || ||||| ||| |
Sbjct: 81789 agtggatgactctaggctgctgcaattgttcagcgagcatggagaggtggttaacgcttc 81730

                                                                         
Query: 122   gatcgtgtatgacagagaaactgggcgttcgcgaggatttggttttgtaactatggcttc 181
             | | || || || |||||| |||||||||| || ||||||||||||||  | ||||| ||
Sbjct: 81729 ggttgtctacgatagagaatctgggcgttctcggggatttggttttgtttccatggcctc 81670

                                                         
Query: 182   aaaggaggatcttgacagtgctatttcagcgcttgatggacagg 225
              |||||||| || ||   ||||||||| || |||||||||||||
Sbjct: 81669 caaggaggagctcgatgatgctatttctgcccttgatggacagg 81626



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                 
Query: 229   tggatggccgcccactccgagtgaacgttgcagcagagagaccacagcgagg 280
             |||||||||||||||| |||||||| || ||||| ||| |||||||||||||
Sbjct: 81481 tggatggccgcccacttcgagtgaatgtggcagctgagcgaccacagcgagg 81430
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  119 bits (60), Expect = 9e-24
 Identities = 147/176 (83%)
 Strand = Plus / Minus

                                                                            
Query: 3        agacctcctcgacagtttgcatcttctttcagggcttatgttggtaacctgccatggcaa 62
                |||||||| || |||||||   |||||||||||  |||||| || || || || ||||||
Sbjct: 22204426 agacctccccgtcagtttgggccttctttcaggatttatgtgggcaatctcccttggcaa 22204367

                                                                            
Query: 63       gcggaagactctaggttggtgcaaatgttcagcgagcatggggaagtagttaatgctacg 122
                | ||| |||||||||||||| ||  ||||||||||||||||  |||||||  | || |  
Sbjct: 22204366 gtggatgactctaggttggtacagctgttcagcgagcatggcaaagtagtcgacgccaga 22204307

                                                                        
Query: 123      atcgtgtatgacagagaaactgggcgttcgcgaggatttggttttgtaactatggc 178
                 | |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 22204306 gttgtgtatgacagagaaactgggcgttcacgaggatttggttttgtaacaatggc 22204251
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>dbj|AP006171.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0070E11
          Length = 142855

 Score =  119 bits (60), Expect = 9e-24
 Identities = 147/176 (83%)
 Strand = Plus / Minus

                                                                         
Query: 3     agacctcctcgacagtttgcatcttctttcagggcttatgttggtaacctgccatggcaa 62
             |||||||| || |||||||   |||||||||||  |||||| || || || || ||||||
Sbjct: 24324 agacctccccgtcagtttgggccttctttcaggatttatgtgggcaatctcccttggcaa 24265

                                                                         
Query: 63    gcggaagactctaggttggtgcaaatgttcagcgagcatggggaagtagttaatgctacg 122
             | ||| |||||||||||||| ||  ||||||||||||||||  |||||||  | || |  
Sbjct: 24264 gtggatgactctaggttggtacagctgttcagcgagcatggcaaagtagtcgacgccaga 24205

                                                                     
Query: 123   atcgtgtatgacagagaaactgggcgttcgcgaggatttggttttgtaactatggc 178
              | |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 24204 gttgtgtatgacagagaaactgggcgttcacgaggatttggttttgtaacaatggc 24149
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>dbj|AP006170.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0042B15
          Length = 157981

 Score =  119 bits (60), Expect = 9e-24
 Identities = 147/176 (83%)
 Strand = Plus / Minus

                                                                          
Query: 3      agacctcctcgacagtttgcatcttctttcagggcttatgttggtaacctgccatggcaa 62
              |||||||| || |||||||   |||||||||||  |||||| || || || || ||||||
Sbjct: 125919 agacctccccgtcagtttgggccttctttcaggatttatgtgggcaatctcccttggcaa 125860

                                                                          
Query: 63     gcggaagactctaggttggtgcaaatgttcagcgagcatggggaagtagttaatgctacg 122
              | ||| |||||||||||||| ||  ||||||||||||||||  |||||||  | || |  
Sbjct: 125859 gtggatgactctaggttggtacagctgttcagcgagcatggcaaagtagtcgacgccaga 125800

                                                                      
Query: 123    atcgtgtatgacagagaaactgggcgttcgcgaggatttggttttgtaactatggc 178
               | |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 125799 gttgtgtatgacagagaaactgggcgttcacgaggatttggttttgtaacaatggc 125744
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>dbj|AK104354.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-H01, full
           insert sequence
          Length = 1196

 Score =  119 bits (60), Expect = 9e-24
 Identities = 147/176 (83%)
 Strand = Plus / Plus

                                                                       
Query: 3   agacctcctcgacagtttgcatcttctttcagggcttatgttggtaacctgccatggcaa 62
           |||||||| || |||||||   |||||||||||  |||||| || || || || ||||||
Sbjct: 708 agacctccccgtcagtttgggccttctttcaggatttatgtgggcaatctcccttggcaa 767

                                                                       
Query: 63  gcggaagactctaggttggtgcaaatgttcagcgagcatggggaagtagttaatgctacg 122
           | ||| |||||||||||||| ||  ||||||||||||||||  |||||||  | || |  
Sbjct: 768 gtggatgactctaggttggtacagctgttcagcgagcatggcaaagtagtcgacgccaga 827

                                                                   
Query: 123 atcgtgtatgacagagaaactgggcgttcgcgaggatttggttttgtaactatggc 178
            | |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 828 gttgtgtatgacagagaaactgggcgttcacgaggatttggttttgtaacaatggc 883
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>dbj|AK069121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007A14, full
           insert sequence
          Length = 1289

 Score =  119 bits (60), Expect = 9e-24
 Identities = 147/176 (83%)
 Strand = Plus / Plus

                                                                       
Query: 3   agacctcctcgacagtttgcatcttctttcagggcttatgttggtaacctgccatggcaa 62
           |||||||| || |||||||   |||||||||||  |||||| || || || || ||||||
Sbjct: 709 agacctccccgtcagtttgggccttctttcaggatttatgtgggcaatctcccttggcaa 768

                                                                       
Query: 63  gcggaagactctaggttggtgcaaatgttcagcgagcatggggaagtagttaatgctacg 122
           | ||| |||||||||||||| ||  ||||||||||||||||  |||||||  | || |  
Sbjct: 769 gtggatgactctaggttggtacagctgttcagcgagcatggcaaagtagtcgacgccaga 828

                                                                   
Query: 123 atcgtgtatgacagagaaactgggcgttcgcgaggatttggttttgtaactatggc 178
            | |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 829 gttgtgtatgacagagaaactgggcgttcacgaggatttggttttgtaacaatggc 884
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>emb|Z11488.1|ZMNBPG Z.mays gene for nucleic acid binding protein
          Length = 3176

 Score =  113 bits (57), Expect = 6e-22
 Identities = 120/141 (85%)
 Strand = Plus / Plus

                                                                        
Query: 38   ttatgttggtaacctgccatggcaagcggaagactctaggttggtgcaaatgttcagcga 97
            ||||||||| |||||||| ||||||| ||| || ||||| |||||| |  ||||||||||
Sbjct: 2275 ttatgttggcaacctgccttggcaagtggatgattctagattggtggagttgttcagcga 2334

                                                                        
Query: 98   gcatggggaagtagttaatgctacgatcgtgtatgacagagaaactgggcgttcgcgagg 157
            ||||||  |||||||| |||| |   | || |||||| ||||||||||||||||||| ||
Sbjct: 2335 gcatggtaaagtagttgatgccagagttgtctatgaccgagaaactgggcgttcgcgggg 2394

                                 
Query: 158  atttggttttgtaactatggc 178
            |||||||||||| ||||||||
Sbjct: 2395 atttggttttgttactatggc 2415
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>gb|AY111861.1| Zea mays CL2457_1 mRNA sequence
          Length = 1273

 Score =  113 bits (57), Expect = 6e-22
 Identities = 120/141 (85%)
 Strand = Plus / Plus

                                                                       
Query: 38  ttatgttggtaacctgccatggcaagcggaagactctaggttggtgcaaatgttcagcga 97
           ||||||||| |||||||| ||||||| ||| || ||||| |||||| |  ||||||||||
Sbjct: 786 ttatgttggcaacctgccttggcaagtggatgattctagattggtggagttgttcagcga 845

                                                                       
Query: 98  gcatggggaagtagttaatgctacgatcgtgtatgacagagaaactgggcgttcgcgagg 157
           ||||||  |||||||| |||| |   | || |||||| ||||||||||||||||||| ||
Sbjct: 846 gcatggtaaagtagttgatgccagagttgtctatgaccgagaaactgggcgttcgcgggg 905

                                
Query: 158 atttggttttgtaactatggc 178
           |||||||||||| ||||||||
Sbjct: 906 atttggttttgttactatggc 926
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>gb|M74566.1|MZENBPAA Zea mays nucleic acid-binding protein (NBP)
          Length = 1251

 Score =  105 bits (53), Expect = 1e-19
 Identities = 119/141 (84%)
 Strand = Plus / Plus

                                                                       
Query: 38  ttatgttggtaacctgccatggcaagcggaagactctaggttggtgcaaatgttcagcga 97
           ||||||||| |||||||| ||||||| ||| || ||||| |||||| |  ||||||||||
Sbjct: 786 ttatgttggcaacctgccttggcaagtggatgattctagattggtggagttgttcagcga 845

                                                                       
Query: 98  gcatggggaagtagttaatgctacgatcgtgtatgacagagaaactgggcgttcgcgagg 157
           ||||||  |||||||| |||| |   | || |||||| |||||||||||||||| || ||
Sbjct: 846 gcatggtaaagtagttgatgccagagttgtctatgaccgagaaactgggcgttcacgggg 905

                                
Query: 158 atttggttttgtaactatggc 178
           |||||||||||| ||||||||
Sbjct: 906 atttggttttgttactatggc 926
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>gb|BT019263.1| Zea mays clone Contig936.F mRNA sequence
          Length = 1108

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 117/141 (82%)
 Strand = Plus / Minus

                                                                       
Query: 38  ttatgttggtaacctgccatggcaagcggaagactctaggttggtgcaaatgttcagcga 97
           ||||||||| |||||||| ||||||| ||| || ||||| ||||||    ||||||||||
Sbjct: 432 ttatgttggcaacctgccttggcaagtggatgattctagattggtggggttgttcagcga 373

                                                                       
Query: 98  gcatggggaagtagttaatgctacgatcgtgtatgacagagaaactgggcgttcgcgagg 157
           ||||||  |||||||| |||| |   | || |||||| ||||||||||| |||| || ||
Sbjct: 372 gcatggtaaagtagttgatgccagagttgtctatgacggagaaactgggggttcacgggg 313

                                
Query: 158 atttggttttgtaactatggc 178
           |||||||||||| ||||||||
Sbjct: 312 atttggttttgttactatggc 292
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>emb|AJ005286.1|HVH005286 Hordeum vulgare cv. Haisa mRNA for cp31AHv protein
          Length = 1318

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 106/128 (82%)
 Strand = Plus / Plus

                                                                       
Query: 39  tatgttggtaacctgccatggcaagcggaagactctaggttggtgcaaatgttcagcgag 98
           ||||| || |||||||||||||||| ||| ||||||||||||||| |  |||||||||||
Sbjct: 797 tatgtgggcaacctgccatggcaagtggacgactctaggttggtggagctgttcagcgag 856

                                                                       
Query: 99  catggggaagtagttaatgctacgatcgtgtatgacagagaaactgggcgttcgcgagga 158
           |||||  |||| ||  |||| | | |||| || |||||||| |||||||| || ||||| 
Sbjct: 857 catggcaaagtggtcgatgccaaggtcgtctacgacagagacactgggcgctcacgaggc 916

                   
Query: 159 tttggttt 166
           || |||||
Sbjct: 917 ttcggttt 924
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>emb|AJ234452.1|HVU234452 Hordeum vulgare partial mRNA; clone cMWG0781
          Length = 350

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 92/110 (83%)
 Strand = Plus / Minus

                                                                       
Query: 39  tatgttggtaacctgccatggcaagcggaagactctaggttggtgcaaatgttcagcgag 98
           ||||| || |||||||||||||||| ||| ||||||||||||||| |  |||||||||||
Sbjct: 304 tatgtgggcaacctgccatggcaagtggacgactctaggttggtggagctgttcagcgag 245

                                                             
Query: 99  catggggaagtagttaatgctacgatcgtgtatgacagagaaactgggcg 148
           |||||  |||| ||  |||| | | |||| || |||||||| ||||||||
Sbjct: 244 catggcaaagtggtcgatgccagggtcgtctacgacagagacactgggcg 195
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>dbj|D38485.1| Triticum aestivum mRNA for Ps16 protein, complete cds
          Length = 1161

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 97/119 (81%)
 Strand = Plus / Plus

                                                                       
Query: 48  aacctgccatggcaagcggaagactctaggttggtgcaaatgttcagcgagcatggggaa 107
           |||||||||||||||| ||| ||||||||||||||  |  ||||||||||||| ||  ||
Sbjct: 681 aacctgccatggcaagtggacgactctaggttggtagagctgttcagcgagcacggcaaa 740

                                                                      
Query: 108 gtagttaatgctacgatcgtgtatgacagagaaactgggcgttcgcgaggatttggttt 166
           || ||  |||| | | | || || |||||||| |||||||| || || |||||||||||
Sbjct: 741 gttgtcgatgccagggttgtctacgacagagacactgggcgctcacggggatttggttt 799
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>emb|X57079.1|NSCHRIB N.sylvestris DNA for 31kD chloroplast ribonucleoprotein
          Length = 5040

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                              
Query: 129  tatgacagagaaactgggcgttcgcgaggatttggttttgtaactatggc 178
            ||||||||||||||||| || |||||||| ||||||||||| || |||||
Sbjct: 3632 tatgacagagaaactggccggtcgcgaggttttggttttgttacgatggc 3681
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>emb|X53942.1|NSRNP31 Tobacco mRNA for 31 kDa chloroplast ribonucleoprotein
          Length = 1201

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                             
Query: 129 tatgacagagaaactgggcgttcgcgaggatttggttttgtaactatggc 178
           ||||||||||||||||| || |||||||| ||||||||||| || |||||
Sbjct: 903 tatgacagagaaactggccggtcgcgaggttttggttttgttacgatggc 952
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>ref|NM_129093.2| Arabidopsis thaliana RNA binding / nucleic acid binding AT2G35410
           mRNA, complete cds
          Length = 1100

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 153 cgaggatttggttttgtaactatggcttc 181
           |||||||||| ||||||||||||||||||
Sbjct: 416 cgaggatttgcttttgtaactatggcttc 444
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>gb|BT000365.1| Arabidopsis thaliana putative chloroplast RNA binding protein
           precursor (At2g35410) mRNA, complete cds
          Length = 963

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 153 cgaggatttggttttgtaactatggcttc 181
           |||||||||| ||||||||||||||||||
Sbjct: 403 cgaggatttgcttttgtaactatggcttc 431
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>gb|AC005314.3| Arabidopsis thaliana chromosome 2 clone T32F12 map ve016, complete
             sequence
          Length = 79881

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 153   cgaggatttggttttgtaactatggcttc 181
             |||||||||| ||||||||||||||||||
Sbjct: 50017 cgaggatttgcttttgtaactatggcttc 49989
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>gb|AY042799.1| Arabidopsis thaliana putative chloroplast RNA binding protein
           precursor (At2g35410; T32F12.21) mRNA, complete cds
          Length = 1062

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 153 cgaggatttggttttgtaactatggcttc 181
           |||||||||| ||||||||||||||||||
Sbjct: 417 cgaggatttgcttttgtaactatggcttc 445
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>ref|XM_464698.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1125

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 141 actgggcgttcgcgaggatttggttttgt 169
           |||||||||||  ||||||||||||||||
Sbjct: 574 actgggcgttctagaggatttggttttgt 602
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>ref|XM_464699.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1927

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 141 actgggcgttcgcgaggatttggttttgt 169
           |||||||||||  ||||||||||||||||
Sbjct: 792 actgggcgttctagaggatttggttttgt 820
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 141     actgggcgttcgcgaggatttggttttgt 169
               |||||||||||  ||||||||||||||||
Sbjct: 6784916 actgggcgttctagaggatttggttttgt 6784888



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 221      acaggagatggatggccgcc 240
                ||||||||||||||||||||
Sbjct: 33700338 acaggagatggatggccgcc 33700319
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>gb|AC092614.2| Homo sapiens BAC clone RP11-192M8 from 2, complete sequence
          Length = 106992

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 471  gttaatttcttgtcaataccatgag 495
            |||||||||||||||| ||||||||
Sbjct: 5887 gttaatttcttgtcaaaaccatgag 5863
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>dbj|AP005826.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0758B01
          Length = 159206

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 141  actgggcgttcgcgaggatttggttttgt 169
            |||||||||||  ||||||||||||||||
Sbjct: 2642 actgggcgttctagaggatttggttttgt 2614
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>dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:B1131G07
          Length = 133992

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 141    actgggcgttcgcgaggatttggttttgt 169
              |||||||||||  ||||||||||||||||
Sbjct: 105969 actgggcgttctagaggatttggttttgt 105941
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>dbj|AK120313.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013055L11, full
            insert sequence
          Length = 2473

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 141  actgggcgttcgcgaggatttggttttgt 169
            |||||||||||  ||||||||||||||||
Sbjct: 1565 actgggcgttctagaggatttggttttgt 1593
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>dbj|AK100904.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132A08, full
           insert sequence
          Length = 1926

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 141 actgggcgttcgcgaggatttggttttgt 169
           |||||||||||  ||||||||||||||||
Sbjct: 791 actgggcgttctagaggatttggttttgt 819
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>gb|AY107260.1| Zea mays PCO071008 mRNA sequence
          Length = 737

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 293 cgcagcggcggagagcatggc 313
           |||||||||||||||||||||
Sbjct: 82  cgcagcggcggagagcatggc 62
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>ref|XM_519003.1| PREDICTED: Pan troglodytes similar to HNRPA2B1 protein (LOC463299),
           mRNA
          Length = 1119

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 154 gaggatttggttttgtaact 173
           ||||||||||||||||||||
Sbjct: 401 gaggatttggttttgtaact 420
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>gb|AY022079.1| Oryza sativa microsatellite MRG4404 containing (TC)X15, closest to
           marker R3324, genomic sequence
          Length = 230

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 221 acaggagatggatggccgcc 240
           ||||||||||||||||||||
Sbjct: 85  acaggagatggatggccgcc 66
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>gb|AC147302.2| Pan troglodytes BAC clone RP43-55L5 from 7, complete sequence
          Length = 191336

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 154    gaggatttggttttgtaact 173
              ||||||||||||||||||||
Sbjct: 174493 gaggatttggttttgtaact 174474
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>gb|AC132367.3| Mus musculus BAC clone RP23-465K21 from chromosome 17, complete sequence
          Length = 192971

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 406    ctgatgctggctctcctcccatcc 429
              ||||| ||||||||||||||||||
Sbjct: 159515 ctgattctggctctcctcccatcc 159538
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>gb|BC000506.2| Homo sapiens heterogeneous nuclear ribonucleoprotein A2/B1, mRNA
           (cDNA clone MGC:8493 IMAGE:2822109), complete cds
          Length = 1541

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 154 gaggatttggttttgtaact 173
           ||||||||||||||||||||
Sbjct: 296 gaggatttggttttgtaact 315
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>gb|AC150977.12| Medicago truncatula clone mth2-32m9, complete sequence
          Length = 125772

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 154   gaggatttggttttgtaactatggcttc 181
             |||||||||||||||| |||||| ||||
Sbjct: 96092 gaggatttggttttgttactatgtcttc 96119
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>emb|BX649569.5| Human DNA sequence from clone RP11-204I2 on chromosome 9 Contains part
             of the gene for a novel protein similar to contactin
             associated protein-like 3 (CNTNAP3), complete sequence
          Length = 162657

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   ctcccgcattagcctcctga 409
             ||||||||||||||||||||
Sbjct: 27882 ctcccgcattagcctcctga 27901
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>emb|CR858535.1| Pongo pygmaeus mRNA; cDNA DKFZp469B1233 (from clone DKFZp469B1233)
          Length = 1735

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 154 gaggatttggttttgtaact 173
           ||||||||||||||||||||
Sbjct: 356 gaggatttggttttgtaact 375
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>emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24,
             complete sequence
          Length = 127506

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 288   tgcggcgcagcggcggagag 307
             ||||||||||||||||||||
Sbjct: 58054 tgcggcgcagcggcggagag 58073
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>gb|U09121.1|AH005377S2 Human hnRNP protein A2 gene, exons 2-7
          Length = 2680

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 154 gaggatttggttttgtaact 173
           ||||||||||||||||||||
Sbjct: 690 gaggatttggttttgtaact 709
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>ref|NM_031243.1| Homo sapiens heterogeneous nuclear ribonucleoprotein A2/B1
           (HNRPA2B1), transcript variant B1, mRNA
          Length = 1780

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 154 gaggatttggttttgtaact 173
           ||||||||||||||||||||
Sbjct: 354 gaggatttggttttgtaact 373
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>ref|NM_002137.2| Homo sapiens heterogeneous nuclear ribonucleoprotein A2/B1
           (HNRPA2B1), transcript variant A2, mRNA
          Length = 1714

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 154 gaggatttggttttgtaact 173
           ||||||||||||||||||||
Sbjct: 318 gaggatttggttttgtaact 337
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>gb|AC092562.4| Papio hamadryas BAC RP41-285I13 (Rosewell Park Cancer Institute BAC
             Library) complete sequence
          Length = 183586

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 390   ctcccgcattagcctcctga 409
             ||||||||||||||||||||
Sbjct: 18883 ctcccgcattagcctcctga 18864
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>gb|AC010677.4| Homo sapiens chromosome 7 clone CTD-2304L4, complete sequence
          Length = 112659

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 154  gaggatttggttttgtaact 173
            ||||||||||||||||||||
Sbjct: 5196 gaggatttggttttgtaact 5177
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 288      tgcggcgcagcggcggagag 307
                ||||||||||||||||||||
Sbjct: 27789384 tgcggcgcagcggcggagag 27789403
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>gb|AC126599.10| Mus musculus chromosome 3, clone RP24-487F9, complete sequence
          Length = 186281

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   tttggttttgtaactatggc 178
             ||||||||||||||||||||
Sbjct: 96169 tttggttttgtaactatggc 96150
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>gb|AF192348.1|AF192348 Saguinus oedipus vitamin D response element binding protein
           (VDRE-BP2) mRNA, complete cds
          Length = 1736

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 154 gaggatttggttttgtaact 173
           ||||||||||||||||||||
Sbjct: 321 gaggatttggttttgtaact 340
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>emb|BX470088.11| Zebrafish DNA sequence from clone DKEY-171E12 in linkage group 7,
             complete sequence
          Length = 102546

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     ggagacctcctcgacagttt 20
             ||||||||||||||||||||
Sbjct: 21410 ggagacctcctcgacagttt 21391
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>dbj|AP004054.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1249_F12
          Length = 133205

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   acaggagatggatggccgcc 240
             ||||||||||||||||||||
Sbjct: 68745 acaggagatggatggccgcc 68726
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>dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0700F06
          Length = 139277

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   acaggagatggatggccgcc 240
             ||||||||||||||||||||
Sbjct: 31205 acaggagatggatggccgcc 31186
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>emb|BX641084.1|HSM806891 Homo sapiens mRNA; cDNA DKFZp686K0732 (from clone DKFZp686K0732)
          Length = 5331

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 154  gaggatttggttttgtaact 173
            ||||||||||||||||||||
Sbjct: 3938 gaggatttggttttgtaact 3957
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>dbj|AK129839.1| Homo sapiens cDNA FLJ26329 fis, clone HRT02026, highly similar to
           Heterogeneous nuclear ribonucleoproteins A2/B1
          Length = 1704

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 154 gaggatttggttttgtaact 173
           ||||||||||||||||||||
Sbjct: 319 gaggatttggttttgtaact 338
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>dbj|AP002827.4| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2589O24, complete
             sequence
          Length = 64281

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 347   tgaaatgttactgcagaaga 366
             ||||||||||||||||||||
Sbjct: 59373 tgaaatgttactgcagaaga 59392
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>emb|BX537494.1|HSM805860 Homo sapiens mRNA; cDNA DKFZp686G0349 (from clone DKFZp686G0349)
          Length = 6299

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 154  gaggatttggttttgtaact 173
            ||||||||||||||||||||
Sbjct: 3198 gaggatttggttttgtaact 3217
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>gb|AC154237.1| Mus musculus BAC clone RP24-162O18 from 17, complete sequence
          Length = 168481

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 406    ctgatgctggctctcctcccatcc 429
              ||||| ||||||||||||||||||
Sbjct: 145049 ctgattctggctctcctcccatcc 145026
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>gb|AC157955.2| Gallus gallus BAC clone TAM31-4B17 from chromosome unknown, complete
             sequence
          Length = 181590

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 403   ctcctgatgctggctctcct 422
             ||||||||||||||||||||
Sbjct: 38911 ctcctgatgctggctctcct 38930
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>gb|AC158368.2| Gallus gallus BAC clone CH261-77E11 from chromosome unknown, complete
              sequence
          Length = 180657

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 403    ctcctgatgctggctctcct 422
              ||||||||||||||||||||
Sbjct: 165585 ctcctgatgctggctctcct 165604
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>emb|BX005035.9| Human DNA sequence from clone RP11-133G22 on chromosome 9, complete
              sequence
          Length = 146143

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 390    ctcccgcattagcctcctga 409
              ||||||||||||||||||||
Sbjct: 118321 ctcccgcattagcctcctga 118302
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>dbj|D28877.1|HUMHNRNP Homo sapiens HNRPA2B1 gene for hnRNP protein A2 and B1, complete cds
          Length = 11390

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 154  gaggatttggttttgtaact 173
            ||||||||||||||||||||
Sbjct: 5743 gaggatttggttttgtaact 5762
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>dbj|AP006535.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT02D13, TM0546,
             complete sequence
          Length = 107979

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 469   atgttaatttcttgtcaata 488
             ||||||||||||||||||||
Sbjct: 79573 atgttaatttcttgtcaata 79592
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>gb|M29064.1|HUMRNPB1A Human hnRNP B1 protein mRNA
          Length = 1760

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 154 gaggatttggttttgtaact 173
           ||||||||||||||||||||
Sbjct: 334 gaggatttggttttgtaact 353
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>gb|M29065.1|HUMRNPA2A Human hnRNP A2 protein mRNA
          Length = 1700

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 154 gaggatttggttttgtaact 173
           ||||||||||||||||||||
Sbjct: 304 gaggatttggttttgtaact 323
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>gb|L15080.1|CIPRNABP Mesembryanthemum crystallinum RNA-binding protein mRNA, complete
           cds
          Length = 1264

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 131 tgacagagaaactgggcgttcgcgaggatttggttttgtaactatggc 178
           ||||||||||||||| ||||| || || ||||  ||||| ||||||||
Sbjct: 727 tgacagagaaactggccgttcacgtggctttgcctttgtcactatggc 774


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,061,142
Number of Sequences: 3902068
Number of extensions: 4061142
Number of successful extensions: 79004
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78777
Number of HSP's gapped (non-prelim): 221
length of query: 519
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 496
effective length of database: 17,143,297,704
effective search space: 8503075661184
effective search space used: 8503075661184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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